Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr10 98095696 . A C CCDS7447.1:NM_004088.3:c.1408Att>Ctt_NP_004079.3:p.470I>L Homo sapiens DNA nucleotidylexotransferase (DNTT), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1jms 1 P09838 81.27 0.0 X-RAY
 2002-01-23 MET A:342 A:471 12.0 0.065 E -119.6 119.6 12.0 0.065 0.0 HOH
 3.515
 CA
 O
4iqt 1 P09838 81.27 0.0 X-RAY
 2013-09-04 MET A:342 A:471 20.0 0.108 E -121.8 113.8 20.0 0.108 0.0 HOH
 3.827
 CA
 O
4iqu 1 P09838 81.27 0.0 X-RAY
 2013-09-04 MET A:342 A:471 4.0 0.022 E -118.2 117.3 4.0 0.022 0.0 HOH
 3.419
 CE
 O
4i27 1 P09838 81.27 0.0 X-RAY
 2013-07-24 MET A:361 A:471 38.0 0.205 E -119.9 115.8 38.0 0.205 0.0 HOH
 7.012
 N
 O
4i28 1 P09838 81.27 0.0 X-RAY
 2013-07-24 MET A:361 A:471 38.0 0.205 E -118.3 115.9 38.0 0.205 0.0 HOH
 3.429
 CE
 O
4i29 1 P09838 81.27 0.0 X-RAY
 2013-07-24 MET A:361 A:471 25.0 0.135 E -116.6 113.8 25.0 0.135 0.0 HOH
 3.633
 CA
 O
4i2a 1 P09838 81.27 0.0 X-RAY
 2013-07-24 MET A:361 A:471 9.0 0.049 E -119.0 112.9 9.0 0.049 0.0 HOH
 3.376
 CE
 O
4i2b 1 P09838 81.27 0.0 X-RAY
 2013-07-24 MET A:361 A:471 9.0 0.049 E -120.0 115.0 9.0 0.049 0.0 HOH
 3.632
 CA
 O
4i2c 1 P09838 81.27 0.0 X-RAY
 2013-07-24 MET A:361 A:471 9.0 0.049 E -120.4 113.9 9.0 0.049 0.0 HOH
 3.710
 CA
 O
4i2d 1 P09838 81.27 0.0 X-RAY
 2013-07-24 MET A:361 A:471 19.0 0.103 E -121.7 116.5 19.0 0.103 0.0 HOH
 3.530
 CA
 O
4i2e 1 P09838 81.27 0.0 X-RAY
 2013-07-24 MET A:361 A:471 14.0 0.076 E -117.8 114.6 14.0 0.076 0.0 HOH
 3.686
 CA
 O
4i2f 1 P09838 81.27 0.0 X-RAY
 2013-07-24 MET A:361 A:471 9.0 0.049 E -118.2 115.1 9.0 0.049 0.0 HOH
 3.459
 CE
 O
4i2g 1 P09838 81.27 0.0 X-RAY
 2013-07-24 MET A:361 A:471 10.0 0.054 E -118.5 116.5 10.0 0.054 0.0 HOH
 3.659
 CA
 O
4i2h 1 P09838 81.27 0.0 X-RAY
 2013-07-24 MET A:361 A:471 103.0 0.557 E -120.5 114.8 103.0 0.557 0.0 ZN
HOH
 8.248
4.393
 O
CE
 ZN
O
4i2i 1 P09838 81.27 0.0 X-RAY
 2013-07-24 MET A:361 A:471 108.0 0.584 E -117.8 114.7 108.0 0.584 0.0 ZN
HOH
 7.692
3.218
 O
O
 ZN
O
4i2j 1 P09838 81.27 0.0 X-RAY
 2013-07-24 MET A:361 A:471 61.0 0.33 E -116.3 115.8 61.0 0.33 0.0 ZN
HOH
 8.588
3.399
 O
CE
 ZN
O
4qz8 1 P09838 81.27 0.0 X-RAY
 2015-06-10 MET A:361 A:471 85.0 0.459 E -124.4 114.9 85.0 0.459 0.0 DG
DG
HOH
 7.853
5.614
3.443
 CA
CA
O
 O3'
OP1
O
4qz9 1 P09838 81.27 0.0 X-RAY
 2015-06-10 MET A:361 A:471 104.0 0.562 E -121.9 113.9 104.0 0.562 0.0 DT
DG
DA
HOH
 9.933
7.676
5.270
2.878
 CG
CA
CA
O
 OP1
O3'
OP1
O
4qza 1 P09838 81.27 0.0 X-RAY
 2015-06-10 MET A:361 A:471 31.0 0.168 E -121.7 117.1 31.0 0.168 0.0 DT
DG
DC
HOH
 9.991
7.662
3.141
3.460
 CE
CA
O
CA
 OP1
O3'
C5
O
4qzb 1 P09838 81.27 0.0 X-RAY
 2015-06-10 MET A:361 A:471 87.0 0.47 E -121.5 118.3 87.0 0.47 0.0 DT
DG
DT
HOH
 9.725
7.569
3.085
3.510
 CE
CA
O
CA
 OP1
O3'
C7
O
5d46 1 Q3UZ80 81.27 0.0 X-RAY
 2016-07-27 MET A:361 A:471 50.0 0.27 E -138.2 104.2 50.0 0.27 0.0 DT
DG
DC
HOH
 9.811
7.968
6.200
3.450
 CG
CA
CA
CG
 OP1
O3'
OP1
O
5d49 1 Q3UZ80 81.27 0.0 X-RAY
 2016-07-27 MET A:361 A:471 102.0 0.551 E -119.9 111.0 102.0 0.551 0.0 DT
DG
DG
DC
HOH
 9.856
7.876
3.504
8.993
2.919
 CG
CA
CE
CE
O
 OP1
O3'
C5
OP1
O
5d4b 1 Q3UZ80 81.27 0.0 X-RAY
 2016-07-27 MET A:361 A:471 34.0 0.184 E -123.5 117.1 34.0 0.184 0.0 DC
SO4
HOH
 7.683
9.491
3.120
 CE
SD
O
 C1'
O2
O
MET B:361 B:471 73.0 0.395 E -121.4 111.7 NA NA NA
4iqw 1 P09838 81.0 0.0 X-RAY
 2013-09-04 MET A:342 A:471 25.0 0.135 E -120.6 116.4 25.0 0.135 0.0 HOH
 3.656
 CA
 O
4iqv 1 P09838 81.0 0.0 X-RAY
 2013-09-04 MET A:342 A:471 25.0 0.135 E -116.8 116.8 25.0 0.135 0.0 HOH
 7.579
 CE
 O
4qzc 1 P09838 81.0 0.0 X-RAY
 2015-06-10 MET A:361 A:471 102.0 0.551 E -122.5 116.8 102.0 0.551 0.0 DT
DG
DG
HOH
 9.572
7.890
5.429
3.596
 CE
CA
CA
CG
 OP1
O3'
OP1
O
4qzd 1 P09838 81.0 0.0 X-RAY
 2015-06-10 MET A:361 A:471 106.0 0.573 E -126.5 114.4 106.0 0.573 0.0 DT
DG
DC
HOH
 9.730
7.732
5.295
3.311
 CE
CA
CA
CE
 OP1
O3'
OP1
O
4qze 1 P09838 81.0 0.0 X-RAY
 2015-06-10 MET A:361 A:471 96.0 0.519 E -128.8 115.4 96.0 0.519 0.0 DT
DG
DG
DG
HOH
 9.940
6.978
3.417
3.559
3.116
 CG
CG
CE
CE
O
 OP1
O3'
O3'
OP1
O
4qzf 1 P09838 81.0 0.0 X-RAY
 2015-06-10 MET A:361 A:471 106.0 0.573 E -121.8 115.6 106.0 0.573 0.0 DT
DG
DA
HOH
 9.989
7.861
3.428
3.554
 CG
CA
CE
CG
 OP1
O3'
C2
O
4qzg 1 P09838 81.0 0.0 X-RAY
 2015-06-10 MET A:361 A:471 104.0 0.562 E -120.5 124.3 104.0 0.562 0.0 DG
DC
HOH
 7.161
4.182
6.733
 CG
CE
CE
 O3'
O2
O
4qzh 1 P09838 81.0 0.0 X-RAY
 2015-06-10 MET A:361 A:471 105.0 0.568 E -121.7 115.5 105.0 0.568 0.0 DT
DG
DT
HOH
 9.939
7.730
3.342
3.346
 CE
CA
CE
CE
 OP1
O3'
N3
O
4qzi 1 P09838 81.0 0.0 X-RAY
 2015-06-10 MET A:361 A:471 89.0 0.481 E -122.7 123.3 89.0 0.481 0.0 DT
DG
DG
DG
ZN
HOH
 8.698
7.019
4.733
6.534
7.897
3.270
 CE
CE
CE
CE
O
O
 OP1
O3'
O5'
OP1
ZN
O
1kdh 2 12802443 82.92 0.0 X-RAY
 2002-05-13 MET B:324 A:471 20.0 0.108 E -121.5 110.0 20.0 0.108 0.0
1kej 1 P09838 82.92 0.0 X-RAY
 2002-05-16 MET A:324 A:471 42.0 0.227 E -126.7 115.1 42.0 0.227 0.0 HOH
 8.656
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p04053-f1 1 P04053 100.0 0.0 ILE A:470 A:470 7.0 0.04 E -123.9 120.3