Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr10 | 98095711 | . | G | A | CCDS7447.1:NM_004088.3:c.1423Gct>Act_NP_004079.3:p.475A>T | Homo sapiens DNA nucleotidylexotransferase (DNTT), transcript variant 1, mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 1jms | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2002-01-23 | ALA | A:347 | A:476 | 5.0 | 0.043 | -167.2 | 169.9 | 5.0 | 0.043 | 0.0 |
HOH |
3.536 |
CB |
O |
|||
| 4iqt | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-09-04 | ALA | A:347 | A:476 | 5.0 | 0.043 | -163.9 | 170.9 | 5.0 | 0.043 | 0.0 |
HOH |
3.318 |
CB |
O |
|||
| 4iqu | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-09-04 | ALA | A:347 | A:476 | 6.0 | 0.052 | -165.6 | 170.7 | 6.0 | 0.052 | 0.0 |
HOH |
3.506 |
CB |
O |
|||
| 4i27 | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | ALA | A:366 | A:476 | 12.0 | 0.104 | -163.6 | 174.1 | 12.0 | 0.104 | 0.0 |
HOH |
3.286 |
CB |
O |
|||
| 4i28 | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | ALA | A:366 | A:476 | 8.0 | 0.07 | -164.8 | 173.2 | 8.0 | 0.07 | 0.0 |
HOH |
3.436 |
CB |
O |
|||
| 4i29 | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | ALA | A:366 | A:476 | 6.0 | 0.052 | -166.5 | 171.4 | 6.0 | 0.052 | 0.0 |
HOH |
3.487 |
CB |
O |
|||
| 4i2a | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | ALA | A:366 | A:476 | 6.0 | 0.052 | -164.4 | 172.1 | 6.0 | 0.052 | 0.0 |
HOH |
3.451 |
CB |
O |
|||
| 4i2b | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | ALA | A:366 | A:476 | 7.0 | 0.061 | -165.2 | 171.7 | 7.0 | 0.061 | 0.0 |
HOH |
3.443 |
CB |
O |
|||
| 4i2c | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | ALA | A:366 | A:476 | 7.0 | 0.061 | -165.8 | 171.9 | 7.0 | 0.061 | 0.0 |
HOH |
3.532 |
CB |
O |
|||
| 4i2d | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | ALA | A:366 | A:476 | 8.0 | 0.07 | -167.0 | 173.1 | 8.0 | 0.07 | 0.0 |
HOH |
3.744 |
CB |
O |
|||
| 4i2e | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | ALA | A:366 | A:476 | 8.0 | 0.07 | -164.9 | 170.2 | 8.0 | 0.07 | 0.0 |
HOH |
3.544 |
CB |
O |
|||
| 4i2f | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | ALA | A:366 | A:476 | 7.0 | 0.061 | -166.1 | 172.7 | 7.0 | 0.061 | 0.0 |
HOH |
3.413 |
CB |
O |
|||
| 4i2g | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | ALA | A:366 | A:476 | 8.0 | 0.07 | -165.9 | 171.2 | 8.0 | 0.07 | 0.0 |
HOH |
3.600 |
CB |
O |
|||
| 4i2h | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | ALA | A:366 | A:476 | 24.0 | 0.209 | -166.3 | 174.0 | 24.0 | 0.209 | 0.0 |
ZN HOH |
5.386 3.277 |
N CB |
ZN O |
|||
| 4i2i | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | ALA | A:366 | A:476 | 13.0 | 0.113 | -165.1 | 174.3 | 13.0 | 0.113 | 0.0 |
ZN HOH |
4.944 3.353 |
N CB |
ZN O |
|||
| 4i2j | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | ALA | A:366 | A:476 | 6.0 | 0.052 | -163.1 | 170.9 | 6.0 | 0.052 | 0.0 |
ZN HOH |
5.558 4.627 |
N N |
ZN O |
|||
| 4qz8 | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2015-06-10 | ALA | A:366 | A:476 | 13.0 | 0.113 | -162.1 | 174.2 | 13.0 | 0.113 | 0.0 |
DG HOH |
7.890 3.366 |
O O |
O3' O |
|||
| 4qz9 | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2015-06-10 | ALA | A:366 | A:476 | 16.0 | 0.139 | -166.6 | 170.0 | 16.0 | 0.139 | 0.0 |
DA HOH |
7.215 3.250 |
O O |
O3' O |
|||
| 4qza | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2015-06-10 | ALA | A:366 | A:476 | 19.0 | 0.165 | -162.3 | 170.2 | 19.0 | 0.165 | 0.0 |
DC HOH |
3.501 3.440 |
CB CB |
N4 O |
|||
| 4qzb | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2015-06-10 | ALA | A:366 | A:476 | 17.0 | 0.148 | -164.9 | 172.7 | 17.0 | 0.148 | 0.0 |
DT HOH |
3.285 3.403 |
O CB |
C7 O |
|||
| 5d46 | 1 | Q3UZ80 | 81.27 | 0.0 |
X-RAY |
2016-07-27 | ALA | A:366 | A:476 | 17.0 | 0.148 | -160.8 | -178.5 | 17.0 | 0.148 | 0.0 |
DC HOH |
8.187 5.492 |
O O |
C3' O |
|||
| 5d49 | 1 | Q3UZ80 | 81.27 | 0.0 |
X-RAY |
2016-07-27 | ALA | A:366 | A:476 | 7.0 | 0.061 | -159.1 | 173.1 | 7.0 | 0.061 | 0.0 |
DG HOH |
8.820 3.317 |
O O |
OP1 O |
|||
| 5d4b | 1 | Q3UZ80 | 81.27 | 0.0 |
X-RAY |
2016-07-27 | ALA | A:366 | A:476 | 20.0 | 0.174 | -161.8 | 170.0 | 20.0 | 0.174 | 0.0 |
HOH |
2.914 |
O |
O |
|||
| ALA | B:366 | B:476 | 11.0 | 0.096 | -162.4 | 170.2 | NA | NA | NA | ||||||||||||||
| 4iqw | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2013-09-04 | ALA | A:347 | A:476 | 7.0 | 0.061 | -164.9 | 172.4 | 7.0 | 0.061 | 0.0 |
HOH |
3.351 |
CB |
O |
|||
| 4iqv | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2013-09-04 | ALA | A:347 | A:476 | 7.0 | 0.061 | -167.8 | 173.1 | 7.0 | 0.061 | 0.0 |
HOH |
3.622 |
CB |
O |
|||
| 4qzc | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2015-06-10 | ALA | A:366 | A:476 | 16.0 | 0.139 | -161.8 | 171.0 | 16.0 | 0.139 | 0.0 |
DG HOH |
8.669 3.153 |
O CB |
OP1 O |
|||
| 4qzd | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2015-06-10 | ALA | A:366 | A:476 | 11.0 | 0.096 | -162.4 | 173.6 | 11.0 | 0.096 | 0.0 |
DC HOH |
8.718 7.281 |
O O |
OP1 O |
|||
| 4qze | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2015-06-10 | ALA | A:366 | A:476 | 19.0 | 0.165 | -155.7 | 170.2 | 19.0 | 0.165 | 0.0 |
DG HOH |
8.222 3.174 |
O O |
C5' O |
|||
| 4qzf | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2015-06-10 | ALA | A:366 | A:476 | 12.0 | 0.104 | -159.1 | 173.1 | 12.0 | 0.104 | 0.0 |
DA HOH |
8.536 5.541 |
O O |
C5' O |
|||
| 4qzg | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2015-06-10 | ALA | A:366 | A:476 | 12.0 | 0.104 | -162.8 | 170.3 | 12.0 | 0.104 | 0.0 |
DC |
8.695 |
O |
OP1 |
|||
| 4qzh | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2015-06-10 | ALA | A:366 | A:476 | 13.0 | 0.113 | -163.3 | 172.3 | 13.0 | 0.113 | 0.0 |
DT HOH |
8.072 6.412 |
O O |
C5' O |
|||
| 4qzi | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2015-06-10 | ALA | A:366 | A:476 | 10.0 | 0.087 | -157.7 | 173.4 | 10.0 | 0.087 | 0.0 |
DG ZN HOH |
9.229 4.860 3.444 |
O N O |
C5' ZN O |
|||
| 1kdh | 2 | 12802443 | 82.92 | 0.0 |
X-RAY |
2002-05-13 | ALA | B:329 | A:476 | 5.0 | 0.043 | -155.4 | 168.3 | 5.0 | 0.043 | 0.0 | |||||||
| 1kej | 1 | P09838 | 82.92 | 0.0 |
X-RAY |
2002-05-16 | ALA | A:329 | A:476 | 7.0 | 0.061 | -152.8 | 145.9 | 7.0 | 0.061 | 0.0 |
HOH |
3.213 |
CB |
O |
|||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p04053-f1 | 1 | P04053 | 100.0 | 0.0 | ALA | A:475 | A:475 | 3.0 | 0.026 | -161.5 | 168.2 | ||