Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr10 98097944 . G A CCDS7447.1:NM_004088.3:c.1493gGa>gAa_NP_004079.3:p.498G>E Homo sapiens DNA nucleotidylexotransferase (DNTT), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1jms 1 P09838 81.27 0.0 X-RAY
 2002-01-23 GLY A:370 A:499 39.0 0.52 T 72.8 33.1 39.0 0.52 0.0 HOH
 3.244
 O
 O
4iqt 1 P09838 81.27 0.0 X-RAY
 2013-09-04 GLY A:370 A:499 44.0 0.587 T 68.1 34.6 44.0 0.587 0.0 HOH
 3.795
 O
 O
4iqu 1 P09838 81.27 0.0 X-RAY
 2013-09-04 GLY A:370 A:499 38.0 0.507 T 74.3 31.7 38.0 0.507 0.0 HOH
 3.884
 O
 O
4i27 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLY A:389 A:499 48.0 0.64 T 68.7 31.0 48.0 0.64 0.0 HOH
 3.864
 CA
 O
4i28 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLY A:389 A:499 51.0 0.68 T 71.0 25.8 51.0 0.68 0.0 HOH
 3.550
 O
 O
4i29 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLY A:389 A:499 49.0 0.653 T 74.6 28.6 49.0 0.653 0.0 HOH
 2.699
 O
 O
4i2a 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLY A:389 A:499 47.0 0.627 T 75.3 29.6 47.0 0.627 0.0 HOH
 3.045
 O
 O
4i2b 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLY A:389 A:499 50.0 0.667 T 71.5 30.7 50.0 0.667 0.0 HOH
 2.972
 O
 O
4i2c 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLY A:389 A:499 49.0 0.653 T 74.4 27.7 49.0 0.653 0.0 HOH
 3.512
 O
 O
4i2d 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLY A:389 A:499 43.0 0.573 T 74.0 31.5 43.0 0.573 0.0 HOH
 3.374
 O
 O
4i2e 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLY A:389 A:499 50.0 0.667 T 71.4 30.0 50.0 0.667 0.0 HOH
 2.790
 O
 O
4i2f 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLY A:389 A:499 49.0 0.653 T 72.4 29.9 49.0 0.653 0.0 HOH
 3.037
 O
 O
4i2g 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLY A:389 A:499 56.0 0.747 T 72.7 29.4 56.0 0.747 0.0 HOH
 4.250
 C
 O
4i2h 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLY A:389 A:499 49.0 0.653 T 76.9 29.2 49.0 0.653 0.0 HOH
 3.486
 O
 O
4i2i 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLY A:389 A:499 50.0 0.667 T 71.9 27.8 50.0 0.667 0.0 HOH
 3.360
 O
 O
4i2j 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLY A:389 A:499 51.0 0.68 T 75.4 29.2 51.0 0.68 0.0 HOH
 3.575
 O
 O
4qz8 1 P09838 81.27 0.0 X-RAY
 2015-06-10 GLY A:389 A:499 44.0 0.587 T 75.4 30.0 44.0 0.587 0.0 HOH
 5.116
 O
 O
4qz9 1 P09838 81.27 0.0 X-RAY
 2015-06-10 GLY A:389 A:499 43.0 0.573 T 72.7 29.9 43.0 0.573 0.0 HOH
 2.813
 O
 O
4qza 1 P09838 81.27 0.0 X-RAY
 2015-06-10 GLY A:389 A:499 42.0 0.56 T 71.6 31.8 42.0 0.56 0.0 HOH
 3.666
 N
 O
4qzb 1 P09838 81.27 0.0 X-RAY
 2015-06-10 GLY A:389 A:499 42.0 0.56 T 73.2 30.7 42.0 0.56 0.0 HOH
 2.978
 O
 O
5d46 1 Q3UZ80 81.27 0.0 X-RAY
 2016-07-27 GLY A:389 A:499 36.0 0.48 T 71.4 31.9 36.0 0.48 0.0 HOH
 3.606
 O
 O
5d49 1 Q3UZ80 81.27 0.0 X-RAY
 2016-07-27 GLY A:389 A:499 43.0 0.573 T 67.2 27.6 43.0 0.573 0.0 HOH
 2.745
 O
 O
5d4b 1 Q3UZ80 81.27 0.0 X-RAY
 2016-07-27 GLY A:389 A:499 39.0 0.52 T 85.0 23.2 39.0 0.52 0.0 HOH
 3.288
 O
 O
GLY B:389 B:499 48.0 0.64 T 85.7 23.6 NA NA NA
4iqw 1 P09838 81.0 0.0 X-RAY
 2013-09-04 GLY A:370 A:499 43.0 0.573 T 73.6 31.0 43.0 0.573 0.0 HOH
 3.806
 N
 O
4iqv 1 P09838 81.0 0.0 X-RAY
 2013-09-04 GLY A:370 A:499 47.0 0.627 T 72.7 30.0 47.0 0.627 0.0 HOH
 4.210
 O
 O
4qzc 1 P09838 81.0 0.0 X-RAY
 2015-06-10 GLY A:389 A:499 44.0 0.587 T 75.2 29.9 44.0 0.587 0.0 HOH
 4.845
 O
 O
4qzd 1 P09838 81.0 0.0 X-RAY
 2015-06-10 GLY A:389 A:499 44.0 0.587 T 75.8 26.9 44.0 0.587 0.0 HOH
 4.772
 O
 O
4qze 1 P09838 81.0 0.0 X-RAY
 2015-06-10 GLY A:389 A:499 46.0 0.613 T 73.0 33.3 46.0 0.613 0.0 HOH
 2.923
 O
 O
4qzf 1 P09838 81.0 0.0 X-RAY
 2015-06-10 GLY A:389 A:499 44.0 0.587 T 74.8 35.5 44.0 0.587 0.0 HOH
 4.153
 CA
 O
4qzg 1 P09838 81.0 0.0 X-RAY
 2015-06-10 GLY A:389 A:499 46.0 0.613 T 75.7 30.2 46.0 0.613 0.0 HOH
 5.407
 O
 O
4qzh 1 P09838 81.0 0.0 X-RAY
 2015-06-10 GLY A:389 A:499 45.0 0.6 T 75.4 33.7 45.0 0.6 0.0 HOH
 2.972
 O
 O
4qzi 1 P09838 81.0 0.0 X-RAY
 2015-06-10 GLY A:389 A:499 41.0 0.547 T 76.9 29.9 41.0 0.547 0.0 HOH
 4.544
 O
 O
1kdh 2 12802443 82.92 0.0 X-RAY
 2002-05-13 GLY B:352 A:499 36.0 0.48 T 74.0 55.8 36.0 0.48 0.0
1kej 1 P09838 82.92 0.0 X-RAY
 2002-05-16 GLY A:352 A:499 34.0 0.453 T 73.1 49.2 34.0 0.453 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p04053-f1 1 P04053 100.0 0.0 GLY A:498 A:498 42.0 0.56 T 59.9 41.3