Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr10 | 98097962 | . | C | A | CCDS7447.1:NM_004088.3:c.1511cCg>cAg_NP_004079.3:p.504P>Q | Homo sapiens DNA nucleotidylexotransferase (DNTT), transcript variant 1, mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 1jms | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2002-01-23 | PRO | A:376 | A:505 | 8.0 | 0.055 | G | -51.7 | -47.7 | 8.0 | 0.055 | 0.0 |
HOH |
3.880 |
CD |
O |
||
| 4iqt | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-09-04 | PRO | A:376 | A:505 | 9.0 | 0.062 | G | -54.4 | -39.1 | 9.0 | 0.062 | 0.0 |
1FO HOH |
9.595 5.814 |
O CG |
NAP O |
||
| 4iqu | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-09-04 | PRO | A:376 | A:505 | 8.0 | 0.055 | G | -53.5 | -40.3 | 8.0 | 0.055 | 0.0 |
1FQ HOH |
9.766 6.188 |
O CA |
CAH O |
||
| 4i27 | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | PRO | A:395 | A:505 | 12.0 | 0.083 | G | -51.3 | -39.1 | 12.0 | 0.083 | 0.0 |
D3T HOH |
9.353 5.724 |
O CG |
O1B O |
||
| 4i28 | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | PRO | A:395 | A:505 | 10.0 | 0.069 | G | -49.6 | -41.2 | 10.0 | 0.069 | 0.0 |
DA HOH |
9.022 3.359 |
O CD |
O3' O |
||
| 4i29 | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | PRO | A:395 | A:505 | 9.0 | 0.062 | G | -53.6 | -40.3 | 9.0 | 0.062 | 0.0 |
DA HOH |
9.331 3.551 |
O CD |
O3' O |
||
| 4i2a | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | PRO | A:395 | A:505 | 9.0 | 0.062 | G | -54.2 | -40.5 | 9.0 | 0.062 | 0.0 |
HOH |
3.727 |
CD |
O |
||
| 4i2b | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | PRO | A:395 | A:505 | 9.0 | 0.062 | G | -53.7 | -38.5 | 9.0 | 0.062 | 0.0 |
APC HOH |
9.541 3.547 |
O CD |
O3' O |
||
| 4i2c | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | PRO | A:395 | A:505 | 8.0 | 0.055 | G | -54.5 | -38.9 | 8.0 | 0.055 | 0.0 |
APC HOH |
9.853 3.501 |
O CD |
O2B O |
||
| 4i2d | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | PRO | A:395 | A:505 | 9.0 | 0.062 | G | -53.0 | -39.4 | 9.0 | 0.062 | 0.0 |
APC HOH |
9.461 3.648 |
O CD |
O1B O |
||
| 4i2e | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | PRO | A:395 | A:505 | 8.0 | 0.055 | G | -54.3 | -39.1 | 8.0 | 0.055 | 0.0 |
APC HOH |
9.544 3.427 |
O CD |
O1B O |
||
| 4i2f | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | PRO | A:395 | A:505 | 9.0 | 0.062 | G | -55.3 | -38.7 | 9.0 | 0.062 | 0.0 |
DA HOH |
9.117 3.431 |
O CD |
O3' O |
||
| 4i2g | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | PRO | A:395 | A:505 | 8.0 | 0.055 | G | -53.1 | -39.1 | 8.0 | 0.055 | 0.0 |
DA HOH |
9.527 4.060 |
O CD |
O3' O |
||
| 4i2h | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | PRO | A:395 | A:505 | 10.0 | 0.069 | G | -53.9 | -41.2 | 10.0 | 0.069 | 0.0 |
APC HOH |
9.750 5.137 |
O CG |
O3' O |
||
| 4i2i | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | PRO | A:395 | A:505 | 8.0 | 0.055 | G | -49.6 | -40.0 | 8.0 | 0.055 | 0.0 |
AP5 HOH |
9.780 6.220 |
O CA |
C5J O |
||
| 4i2j | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | PRO | A:395 | A:505 | 8.0 | 0.055 | G | -52.8 | -40.9 | 8.0 | 0.055 | 0.0 |
DCP HOH |
9.721 3.285 |
O CD |
O3' O |
||
| 4qz8 | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2015-06-10 | PRO | A:395 | A:505 | 9.0 | 0.062 | G | -53.6 | -39.9 | 9.0 | 0.062 | 0.0 |
DCT HOH |
9.345 6.997 |
O CG |
O1B O |
||
| 4qz9 | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2015-06-10 | PRO | A:395 | A:505 | 13.0 | 0.09 | G | -53.1 | -41.5 | 13.0 | 0.09 | 0.0 |
DCT HOH |
9.374 5.235 |
O CG |
O1B O |
||
| 4qza | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2015-06-10 | PRO | A:395 | A:505 | 13.0 | 0.09 | G | -54.6 | -40.2 | 13.0 | 0.09 | 0.0 |
DCT HOH |
9.348 5.285 |
O CG |
O1B O |
||
| 4qzb | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2015-06-10 | PRO | A:395 | A:505 | 13.0 | 0.09 | G | -54.4 | -40.2 | 13.0 | 0.09 | 0.0 |
DCT HOH |
9.392 5.271 |
O CG |
O1B O |
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| 5d46 | 1 | Q3UZ80 | 81.27 | 0.0 |
X-RAY |
2016-07-27 | PRO | A:395 | A:505 | 22.0 | 0.152 | G | -38.4 | -59.4 | 22.0 | 0.152 | 0.0 |
POP HOH |
9.471 7.329 |
O O |
O1 O |
||
| 5d49 | 1 | Q3UZ80 | 81.27 | 0.0 |
X-RAY |
2016-07-27 | PRO | A:395 | A:505 | 12.0 | 0.083 | G | -49.2 | -36.7 | 12.0 | 0.083 | 0.0 |
SO4 HOH |
9.253 3.779 |
O CD |
O2 O |
||
| 5d4b | 1 | Q3UZ80 | 81.27 | 0.0 |
X-RAY |
2016-07-27 | PRO | A:395 | A:505 | 4.0 | 0.028 | G | -46.1 | -41.0 | 4.0 | 0.028 | 0.0 |
SO4 HOH |
9.483 6.145 |
O CG |
O3 O |
||
| PRO | B:395 | B:505 | 7.0 | 0.048 | G | -53.5 | -33.9 | NA | NA | NA | |||||||||||||
| 4iqw | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2013-09-04 | PRO | A:376 | A:505 | 9.0 | 0.062 | G | -53.4 | -39.6 | 9.0 | 0.062 | 0.0 |
1FQ HOH |
9.925 3.695 |
O CD |
CAH O |
||
| 4iqv | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2013-09-04 | PRO | A:376 | A:505 | 8.0 | 0.055 | G | -53.3 | -40.1 | 8.0 | 0.055 | 0.0 |
1FO HOH |
9.367 6.077 |
O CA |
NAP O |
||
| 4qzc | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2015-06-10 | PRO | A:395 | A:505 | 13.0 | 0.09 | G | -55.0 | -40.3 | 13.0 | 0.09 | 0.0 |
DCT HOH |
9.633 6.741 |
O CG |
O1B O |
||
| 4qzd | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2015-06-10 | PRO | A:395 | A:505 | 15.0 | 0.103 | G | -54.9 | -40.4 | 15.0 | 0.103 | 0.0 |
DCT HOH |
9.593 6.025 |
O CA |
O1B O |
||
| 4qze | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2015-06-10 | PRO | A:395 | A:505 | 8.0 | 0.055 | G | -54.6 | -39.0 | 8.0 | 0.055 | 0.0 |
DCT HOH |
9.478 5.554 |
O CG |
O1B O |
||
| 4qzf | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2015-06-10 | PRO | A:395 | A:505 | 13.0 | 0.09 | G | -54.4 | -40.7 | 13.0 | 0.09 | 0.0 |
DCT HOH |
9.673 6.715 |
O CB |
O1B O |
||
| 4qzg | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2015-06-10 | PRO | A:395 | A:505 | 9.0 | 0.062 | G | -54.3 | -40.2 | 9.0 | 0.062 | 0.0 |
DCT HOH |
9.375 4.144 |
O CG |
O1B O |
||
| 4qzh | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2015-06-10 | PRO | A:395 | A:505 | 13.0 | 0.09 | G | -55.4 | -40.5 | 13.0 | 0.09 | 0.0 |
DCT HOH |
9.464 3.655 |
O CD |
O1B O |
||
| 4qzi | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2015-06-10 | PRO | A:395 | A:505 | 8.0 | 0.055 | G | -55.0 | -39.8 | 8.0 | 0.055 | 0.0 |
DCT HOH |
9.403 5.555 |
O CG |
O3A O |
||
| 1kdh | 2 | 12802443 | 82.92 | 0.0 |
X-RAY |
2002-05-13 | PRO | B:358 | A:505 | 9.0 | 0.062 | G | -51.3 | -32.1 | 9.0 | 0.062 | 0.0 |
BRU |
9.528 |
O |
O3' |
||
| 1kej | 1 | P09838 | 82.92 | 0.0 |
X-RAY |
2002-05-16 | PRO | A:358 | A:505 | 11.0 | 0.076 | G | -48.9 | -40.1 | 11.0 | 0.076 | 0.0 | ||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p04053-f1 | 1 | P04053 | 100.0 | 0.0 | PRO | A:504 | A:504 | 8.0 | 0.055 | G | -52.2 | -38.2 | |