Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr11 110306644 . A C CCDS8344.1:NM_004109.4:c.272gAt>gCt_NP_004100.1:p.91D>A Homo sapiens ferredoxin 1 (FDX1), mRNA.
pdb_id: 
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label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3p1m 1 P10109 100.0 1e-88 X-RAY
 2010-11-03 ASP A:32 A:91 67.0 0.447 H -51.4 -53.6 67.0 0.447 0.0 FES
HOH
 8.276
7.203
 N
O
 S2
O
ASP B:32 B:91 60.0 0.4 H -50.7 -42.3 NA NA NA
ASP C:32 C:91 64.0 0.427 H -50.6 -49.8 NA NA NA
ASP D:32 D:91 69.0 0.46 H -50.6 -39.9 NA NA NA
ASP E:32 E:91 68.0 0.453 H -50.8 -41.1 NA NA NA
ASP F:32 F:91 59.0 0.393 H -52.7 -41.0 NA NA NA
ASP G:32 G:91 61.0 0.407 H -51.8 -41.1 61.0 0.407 0.0 FES
HOH
 8.475
7.181
 N
OD1
 S2
O
ASP H:32 H:91 74.0 0.493 H -50.5 -39.8 NA NA NA
3n9z 2 P10109 100.0 6e-88 X-RAY
 2011-06-08 ASP C:30 NA:NA DO NA DO DO DO NA NA NA
ASP D:30 NA:NA DO NA DO DO DO NA NA NA
3na1 2 P10109 100.0 6e-88 X-RAY
 2011-06-08 ASP C:30 NA:NA DO NA DO DO DO NA NA NA
ASP D:30 NA:NA DO NA DO DO DO NA NA NA
7m8i 1 P10109,P19099 100.0 9e-86 X-RAY
 2021-05-26 ASP A:32 A:91 55.0 0.367 H -58.4 -44.1 55.0 0.367 0.0 FES
 8.511
 H
 FE2
ASP B:32 B:91 56.0 0.373 H -55.2 -38.2 56.0 0.373 0.0 FES
 8.514
 H
 S2
ASP C:32 C:91 123.0 0.82 H -53.4 -43.6 123.0 0.82 0.0 FES
 8.111
 N
 S2
3n9y 2 P10109 100.0 4e-81 X-RAY
 2011-06-08 ASP C:30 C:31 103.0 0.687 H -59.4 -25.7 103.0 0.687 0.0 FES
 8.522
 N
 S2
ASP D:30 D:31 90.0 0.6 H -62.3 -20.7 NA NA NA
1l6u 1 P00257 89.52 9e-81 NMR
 2002-06-26 ASP A:31 A:31 70.0 0.467 H -57.4 -43.6 70.0 0.467 0.0 FES
 8.699
 H
 S2
1cje 1 P00257 89.43 3e-80 X-RAY
 2000-01-21 ASP A:30 A:31 58.0 0.387 H -63.6 -35.0 58.0 0.387 0.0 FES
HOH
 8.702
2.565
 N
OD2
 S2
O
ASP B:30 B:31 59.0 0.393 H -54.5 -40.7 59.0 0.393 0.0 FES
HOH
 8.280
4.124
 N
O
 S2
O
ASP C:30 C:31 65.0 0.433 H -54.4 -38.4 NA NA NA
ASP D:30 D:31 55.0 0.367 H -68.1 -34.4 NA NA NA
1e6e 2 P00257 89.43 5e-80 X-RAY
 2001-08-09 ASP B:31 B:31 54.0 0.36 H -66.3 -40.9 54.0 0.36 0.0 FES
 8.535
 N
 S2
ASP D:31 D:31 62.0 0.413 H -68.7 -40.1 NA NA NA
1ayf 1 P00257 94.29 1e-71 X-RAY
 1998-12-30 ASP A:28 A:31 59.0 0.393 H -53.1 -46.4 59.0 0.393 0.0 FES
HOH
 8.422
5.772
 N
OD1
 S2
O
ASP B:28 B:31 52.0 0.347 H -51.5 -50.4 52.0 0.347 0.0 FES
HOH
 8.576
2.609
 N
OD1
 S2
O
2bt6 1 P00257 93.46 2e-71 X-RAY
 2006-01-25 ASP A:31 A:31 60.0 0.4 H -54.8 -41.5 60.0 0.4 0.0 FES
RUA
HOH
 8.426
5.393
2.747
 N
OD2
OD2
 S1
C6
O
ASP B:31 B:31 59.0 0.393 H -54.7 -42.0 NA NA NA
3na0 2 P10109 100.0 6e-45 X-RAY
 2010-09-08 ASP C:4 NA:NA DO NA DO DO DO NA NA NA
ASP D:4 NA:NA DO NA DO DO DO NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p10109-f1 1 P10109 100.0 6e-134 ASP A:91 A:91 71.0 0.473 H -58.4 -41.6