Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr11 110327727 . T A CCDS8344.1:NM_004109.4:c.396gaT>gaA_NP_004100.1:p.132D>E Homo sapiens ferredoxin 1 (FDX1), mRNA.
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3p1m 1 P10109 100.0 1e-88 X-RAY
 2010-11-03 ASP A:73 A:132 132.0 0.88 H -64.5 -40.4 132.0 0.88 0.0 HOH
 6.648
 O
 O
ASP B:73 B:132 139.0 0.927 H -59.6 -46.4 NA NA NA
ASP C:73 C:132 130.0 0.867 H -67.3 -38.0 NA NA NA
ASP D:73 D:132 139.0 0.927 H -58.9 -45.2 NA NA NA
ASP E:73 E:132 139.0 0.927 H -59.0 -44.9 NA NA NA
ASP F:73 F:132 139.0 0.927 H -59.6 -44.9 NA NA NA
ASP G:73 G:132 141.0 0.94 H -59.2 -45.8 141.0 0.94 0.0 HOH
 3.059
 OD2
 O
ASP H:73 H:132 140.0 0.933 H -59.2 -45.3 NA NA NA
3n9z 2 P10109 100.0 6e-88 X-RAY
 2011-06-08 ASP C:71 C:72 137.0 0.913 360.0 -41.8 38.0 0.253 0.66 A:P05108:0.66
 HOH
 3.417
 OD1
 O
ASP D:71 D:72 146.0 0.973 360.0 -40.6 NA NA NA
3na1 2 P10109 100.0 6e-88 X-RAY
 2011-06-08 ASP C:71 C:72 150.0 1.0 360.0 -42.8 54.0 0.36 0.64 A:P05108:0.64
 HOH
 3.181
 OD2
 O
ASP D:71 NA:NA DO NA DO DO DO NA NA NA
7m8i 1 P10109,P19099 100.0 9e-86 X-RAY
 2021-05-26 ASP A:73 A:132 27.0 0.18 H -62.9 -35.4 27.0 0.18 0.0
ASP B:73 B:132 57.0 0.38 H -77.3 -16.2 57.0 0.38 0.0
ASP C:73 C:132 44.0 0.293 H -58.3 -35.6 44.0 0.293 0.0
3n9y 2 P10109 100.0 4e-81 X-RAY
 2011-06-08 ASP C:71 C:72 117.0 0.78 H -55.4 -38.1 33.0 0.22 0.56 A:P05108:0.56
 HOH
 2.859
 OD1
 O
ASP D:71 D:72 117.0 0.78 H -55.9 -36.5 NA NA NA
1l6u 1 P00257 89.52 9e-81 NMR
 2002-06-26 ASP A:72 A:72 140.0 0.933 H -77.8 -41.7 140.0 0.933 0.0
1cje 1 P00257 89.43 3e-80 X-RAY
 2000-01-21 ASP A:71 A:72 123.0 0.82 H -62.1 -26.1 123.0 0.82 0.0 HOH
 3.261
 OD2
 O
ASP B:71 B:72 113.0 0.753 H -49.9 -32.1 113.0 0.753 0.0 HOH
 2.951
 OD1
 O
ASP C:71 C:72 114.0 0.76 H -66.6 -26.4 NA NA NA
ASP D:71 D:72 110.0 0.733 H -65.4 -65.7 NA NA NA
1e6e 2 P00257 89.43 5e-80 X-RAY
 2001-08-09 ASP B:72 B:72 115.0 0.767 H -68.1 -37.3 81.0 0.54 0.227 A:P08165:0.227
 HOH
 3.204
 OD2
 O
ASP D:72 D:72 132.0 0.88 H -66.1 -37.5 NA NA NA
1ayf 1 P00257 94.29 1e-71 X-RAY
 1998-12-30 ASP A:69 A:72 132.0 0.88 H -62.6 -36.6 132.0 0.88 0.0 HOH
 3.025
 N
 O
ASP B:69 B:72 131.0 0.873 H -61.4 -41.5 131.0 0.873 0.0 HOH
 2.886
 N
 O
2bt6 1 P00257 93.46 2e-71 X-RAY
 2006-01-25 ASP A:72 A:72 131.0 0.873 H -60.4 -36.6 131.0 0.873 0.0 HOH
 2.722
 OD1
 O
ASP B:72 B:72 131.0 0.873 H -59.2 -36.7 NA NA NA
3na0 2 P10109 100.0 6e-45 X-RAY
 2010-09-08 ASP C:45 C:72 118.0 0.787 H -65.5 -32.9 30.0 0.2 0.587 A:P05108:0.587
 HOH
 3.344
 OD2
 O
ASP D:45 D:72 116.0 0.773 H -59.2 -31.8 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p10109-f1 1 P10109 100.0 6e-134 ASP A:132 A:132 124.0 0.827 H -62.5 -41.4