wupsivus

Variant

Genome	Chromosome	Position	VCF ID	Ref	Alt	mRNA Change	mRNA Info
GRCh37	chr11	116706723	.	A	C	CCDS8378.1:NM_000039.1:c.605cTt>cGt_NP_000030.1:p.202L>R	Homo sapiens apolipoprotein A-I (APOA1), mRNA.

pdb_id	:
label_asym_id	:
label_seq_id	:
label_comp_id	:
auth_asym_id	:
auth_seq_id	:

alphafold_id	:
label_asym_id	:
label_seq_id	:
label_comp_id	:
auth_asym_id	:
auth_seq_id	:

PDB

Entity							Residue			Monomer					BioUnit				Ligand				View
PDB	Entity	Uniprot	Identity	Evalue	ExpMethod	Date	Name	Label	Auth	ASA	rASA	SS	φ	ψ	ASA	rASA	ΔASA	Interaction	Name	Distance	Atom(p)	Atom(l)	View
3k2s	1	P02647	100.0	4e-177	SOLUTION SCATTERING	2010-04-07	LEU	A:178	A:178	87.0	0.512	H	-47.7	-38.0	87.0	0.512	0.0		POV POV POV POV POV	8.437 3.607 9.913 6.232 7.211	N CD1 CD1 O N	C218 O13 C24 O22 C314
3k2s	1	P02647	100.0	4e-177	SOLUTION SCATTERING	2010-04-07	LEU	B:178	B:178	103.0	0.606	H	-80.4	-45.6	103.0	0.606	0.0		POV POV POV POV POV POV POV CLR	7.049 9.771 7.681 4.761 3.537 9.297 9.871 8.182	CD2 CD2 N CD1 CD1 O O CD2	C25 C218 C216 C35 C36 C34 O22 C18
1av1	1	P02647	100.0	3e-142	X-RAY	1998-02-04	LEU	A:136	A:178	103.0	0.606	H	-76.4	-24.2	23.0	0.135	0.471	D:P02647:0.182 C:P02647:0.288
							LEU	B:136	B:178	101.0	0.594	H	-80.2	-39.2	23.0	0.135	0.459	D:P02647:0.271 C:P02647:0.206
							LEU	C:136	C:178	102.0	0.6	H	-76.4	-24.1	22.0	0.129	0.471	A:P02647:0.288 B:P02647:0.182
							LEU	D:136	D:178	104.0	0.612	H	-80.3	-39.2	26.0	0.153	0.459	A:P02647:0.206 B:P02647:0.253
4v6m	5	P02647	100.0	3e-142	EM	2014-07-09	LEU	E:135	A0:178	117.0	0.688	S	-137.5	-29.4	117.0	0.688	0.0		PGV PGV PGV PGV PEV PEV	5.960 8.957 9.602 6.108 8.445 6.716	N O N N N N	O14 C18 C18 C34 C26 C26
4v6m	5	P02647	100.0	3e-142	EM	2014-07-09	LEU	F:135	A1:178	72.0	0.424		-88.0	119.5	72.0	0.424	0.0		PEV PEV PEV	9.745 4.048 6.412	N O N	C26 N6 C19
6pts	1	P02647	100.0	2e-140	NMR	2020-05-13	LEU	A:135	A:335	115.0	0.676	H	-68.3	-43.7	115.0	0.676	0.0
6pts	1	P02647	100.0	2e-140	NMR	2020-05-13	LEU	B:135	C:533	100.0	0.588	H	-63.7	-35.9	100.0	0.588	0.0
6ptw	1	P02647	100.0	2e-140	NMR	2020-05-13	LEU	A:135	A:335	114.0	0.671	H	-58.8	-41.8	114.0	0.671	0.0
6ptw	1	P02647	100.0	2e-140	NMR	2020-05-13	LEU	B:135	C:533	98.0	0.576	H	-67.9	-29.2	98.0	0.576	0.0		PCW	9.962	CD2	C40
2msc	1	P02647	100.0	4e-140	NMR	2015-06-03	LEU	A:137	A:335	89.0	0.524	H	-61.3	-40.1	89.0	0.524	0.0
2msc	1	P02647	100.0	4e-140	NMR	2015-06-03	LEU	B:137	C:533	97.0	0.571	H	-64.4	-41.3	97.0	0.571	0.0
2msd	1	P02647	100.0	4e-140	NMR	2015-06-03	LEU	A:137	A:335	109.0	0.641	H	-61.3	-39.1	109.0	0.641	0.0
2msd	1	P02647	100.0	4e-140	NMR	2015-06-03	LEU	B:137	C:533	92.0	0.541	H	-67.4	-34.5	92.0	0.541	0.0
2mse	1	P02647	100.0	4e-140	NMR	2015-06-03	LEU	A:137	A:335	93.0	0.547	H	-61.5	-37.7	93.0	0.547	0.0		PCW	9.464	CD2	C45
2mse	1	P02647	100.0	4e-140	NMR	2015-06-03	LEU	B:137	C:533	98.0	0.576	H	-62.5	-40.8	98.0	0.576	0.0		PCW	9.694	N	C48
6cc9	1	P02647	100.0	4e-140	NMR	2018-09-05	LEU	A:137	A:335	96.0	0.565	H	-63.1	-35.0	96.0	0.565	0.0		PCW	8.810	CD2	C48
6cc9	1	P02647	100.0	4e-140	NMR	2018-09-05	LEU	C:137	C:533	94.0	0.553	H	-64.3	-43.1	94.0	0.553	0.0		PCW	7.611	N	C48
6cch	1	P02647	100.0	4e-140	NMR	2018-08-29	LEU	A:137	A:335	93.0	0.547	H	-61.5	-37.7	93.0	0.547	0.0
6cch	1	P02647	100.0	4e-140	NMR	2018-08-29	LEU	C:137	C:533	98.0	0.576	H	-62.5	-40.7	98.0	0.576	0.0
6ccx	1	P02647	100.0	4e-140	NMR	2018-09-05	LEU	A:137	A:335	106.0	0.624	H	-60.8	-43.6	106.0	0.624	0.0
6ccx	1	P02647	100.0	4e-140	NMR	2018-09-05	LEU	C:137	C:533	95.0	0.559	H	-67.8	-40.1	95.0	0.559	0.0
6w4e	1	P02647	100.0	4e-140	NMR	2020-04-15	LEU	A:137	A:335	91.0	0.535	H	-60.6	-42.3	91.0	0.535	0.0		PCW	8.341	CD2	C47
6w4e	1	P02647	100.0	4e-140	NMR	2020-04-15	LEU	B:137	D:533	95.0	0.559	H	-63.2	-32.0	95.0	0.559	0.0
6w4f	1	P02647	100.0	4e-140	NMR	2020-04-29	LEU	A:137	A:335	109.0	0.641	H	-56.2	-42.4	109.0	0.641	0.0
6w4f	1	P02647	100.0	4e-140	NMR	2020-04-29	LEU	B:137	D:533	92.0	0.541	H	-65.0	-32.6	92.0	0.541	0.0
7rsc	2	P02647	100.0	4e-140	NMR	2021-09-22	LEU	C:137	D:378	101.0	0.594	H	-66.0	-31.1	99.0	0.582	0.012	D:P02647:0.012	7Q9 7Q9 7Q9 7Q9	3.618 6.397 8.771 8.615	CD2 CD1 CD2 CD1	C318 C315 C318 C318
7rsc	2	P02647	100.0	4e-140	NMR	2021-09-22	LEU	D:137	E:678	108.0	0.635	H	-66.9	-51.4	108.0	0.635	0.0		7Q9 17F 7Q9	9.618 4.605 4.243	CD1 CD2 CD1	C34 O8 C33
7rse	2	P02647	100.0	4e-140	NMR	2021-09-22	LEU	C:137	D:378	103.0	0.606	H	-66.2	-36.0	103.0	0.606	0.0		7Q9 17F 7Q9 7Q9 7Q9 7Q9	9.871 9.652 4.364 6.400 8.214 8.874	CD1 CD1 CD1 CD1 CD2 CD2	C34 C42 C37 C315 C318 C318
7rse	2	P02647	100.0	4e-140	NMR	2021-09-22	LEU	D:137	E:678	112.0	0.659	H	-65.6	-44.4	112.0	0.659	0.0		7Q9 17F 7Q9	8.905 3.641 3.977	CD2 CD1 CD1	C34 C25 C33
7kjr	2	P02647	100.0	8e-133	EM	2020-11-18	LEU	C:145	NA:NA	DO	NA	DO	DO	DO	NA	NA	NA
7kjr	2	P02647	100.0	8e-133	EM	2020-11-18	LEU	D:145	NA:NA	DO	NA	DO	DO	DO	NA	NA	NA
3r2p	1	P02647	100.0	4e-132	X-RAY	2011-09-21	LEU	A:179	A:178	99.0	0.582	H	-70.4	-42.0	0.0	0.0	0.582	A:P02647:0.582
6clz	2	P02647	89.57	2e-127	NMR	2018-12-12	LEU	B:146	B:200	95.0	0.559	H	-66.8	-37.2	85.0	0.5	0.059	C:P02647:0.059	PX4 PX4 PX4 PX4 PX4 PX4 PX4 PX4 PX4	7.192 2.558 5.609 1.946 6.781 8.545 6.128 2.316 8.014	HD13 HD13 HD23 HD12 HD12 HD11 HD21 HD21 HD21	H20 H47 H25 H35 H70 H63 H34 H71 H68
6clz	2	P02647	89.57	2e-127	NMR	2018-12-12	LEU	C:146	C:200	78.0	0.459	H	-62.1	-40.6	78.0	0.459	0.0		PX4 PX4 PX4 PX4 PX4 PX4 PX4	5.547 7.993 7.005 5.909 2.589 5.201 9.423	H O HA H HD13 HD11 HB2	H66 H45 H71 H69 O2 O2 H58
6cm1	2	P02647	89.57	2e-127	NMR	2018-12-12	LEU	B:146	B:200	118.0	0.694	H	-63.6	-40.6	118.0	0.694	0.0		PX4 PX4 PX4 PX4 PX4 PX4 PX4 PX4	7.053 3.446 5.834 2.081 6.466 2.153 6.707 2.710	HD11 HD13 O HB3 HD21 HD22 HD23 HD22	H52 H47 H28 H68 H66 H33 H67 H38
6cm1	2	P02647	89.57	2e-127	NMR	2018-12-12	LEU	C:146	C:200	75.0	0.441	H	-73.5	-26.6	75.0	0.441	0.0		PX4 PX4 PX4 PX4 PX4 PX4	9.145 8.081 8.360 5.878 4.535 2.562	HD23 HD23 HD12 HD13 HD12 HD22	H70 H72 O2 H13 H10 H17
2n5e	1	P02647	88.36	1e-112	NMR	2016-12-21	LEU	A:102	A:178	95.0	0.559	H	-67.0	-49.3	69.0	0.406	0.153	B:P02647:0.153
2n5e	1	P02647	88.36	1e-112	NMR	2016-12-21	LEU	B:102	B:178	94.0	0.553	H	-67.3	-49.0	68.0	0.4	0.153	A:P02647:0.153

AlphaFold DB

Entity					Residue			Monomer					View
ID	Entity	Uniprot	Identity	Evalue	Name	Label	Auth	ASA	rASA	SS	φ	ψ	View
af-p02647-f1	1	P02647	100.0	0.0	LEU	A:202	A:202	122.0	0.718	H	-75.3	-37.2

wupsivus
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