wupsivus

Variant

Genome	Chromosome	Position	VCF ID	Ref	Alt	mRNA Change	mRNA Info
GRCh37	chr11	116706735	.	A	C	CCDS8378.1:NM_000039.1:c.593tTg>tGg_NP_000030.1:p.198L>W	Homo sapiens apolipoprotein A-I (APOA1), mRNA.

pdb_id	:
label_asym_id	:
label_seq_id	:
label_comp_id	:
auth_asym_id	:
auth_seq_id	:

alphafold_id	:
label_asym_id	:
label_seq_id	:
label_comp_id	:
auth_asym_id	:
auth_seq_id	:

PDB

Entity							Residue			Monomer					BioUnit				Ligand				View
PDB	Entity	Uniprot	Identity	Evalue	ExpMethod	Date	Name	Label	Auth	ASA	rASA	SS	φ	ψ	ASA	rASA	ΔASA	Interaction	Name	Distance	Atom(p)	Atom(l)	View
3k2s	1	P02647	100.0	4e-177	SOLUTION SCATTERING	2010-04-07	LEU	A:174	A:174	99.0	0.582		84.4	20.3	90.0	0.529	0.053	B:P02647:0.053	POV POV POV POV POV POV	7.620 8.980 3.849 4.049 9.884 8.359	CD1 CD1 CD2 CD1 O O	C28 C216 C210 C26 C26 C313
3k2s	1	P02647	100.0	4e-177	SOLUTION SCATTERING	2010-04-07	LEU	B:174	B:174	104.0	0.612		-90.8	-23.1	104.0	0.612	0.0		POV POV POV POV POV POV CLR	7.924 5.458 9.459 5.753 3.938 9.442 9.776	CD1 N CD2 CA CD2 CD2 CD1	O22 C36 C23 C34 O14 O22 C19
1av1	1	P02647	100.0	3e-142	X-RAY	1998-02-04	LEU	A:132	A:174	88.0	0.518	H	-50.2	-38.4	18.0	0.106	0.412	D:P02647:0.124 C:P02647:0.229 B:P02647:0.129
							LEU	B:132	B:174	84.0	0.494	H	-65.4	-24.5	21.0	0.124	0.37	D:P02647:0.159 A:P02647:0.118 C:P02647:0.118
							LEU	C:132	C:174	91.0	0.535	H	-50.2	-38.4	17.0	0.1	0.435	D:P02647:0.135 A:P02647:0.229 B:P02647:0.135
							LEU	D:132	D:174	81.0	0.476	H	-65.3	-24.5	21.0	0.124	0.352	A:P02647:0.112 C:P02647:0.106 B:P02647:0.159
4v6m	5	P02647	100.0	3e-142	EM	2014-07-09	LEU	E:131	A0:174	58.0	0.341	G	-68.9	-38.8	58.0	0.341	0.0		PGV PEV PGV PEV PEV	6.871 6.948 8.574 5.253 8.098	C N O N O	O06 N6 C32 C26 C26
4v6m	5	P02647	100.0	3e-142	EM	2014-07-09	LEU	F:131	A1:174	109.0	0.641	H	58.2	57.1	109.0	0.641	0.0		PEV PEV PEV PEV PEV	6.600 7.953 3.384 3.864 8.469	CD1 CD1 O CD1 CD1	C26 C36 N6 C15 C42
6pts	1	P02647	100.0	2e-140	NMR	2020-05-13	LEU	A:131	A:331	101.0	0.594	H	-57.9	-41.5	101.0	0.594	0.0		PCW PCW PCW	9.575 9.161 8.437	CD2 CD1 CD2	C27 C20 C48
6pts	1	P02647	100.0	2e-140	NMR	2020-05-13	LEU	B:131	C:529	86.0	0.506	H	-61.7	-34.4	86.0	0.506	0.0		PCW	9.162	CD2	C47
6ptw	1	P02647	100.0	2e-140	NMR	2020-05-13	LEU	A:131	A:331	104.0	0.612	H	-59.8	-42.0	104.0	0.612	0.0		PCW PCW	9.369 9.029	CD1 CD2	C24 C27
6ptw	1	P02647	100.0	2e-140	NMR	2020-05-13	LEU	B:131	C:529	88.0	0.518	H	-65.4	-32.2	88.0	0.518	0.0
2msc	1	P02647	100.0	4e-140	NMR	2015-06-03	LEU	A:133	A:331	89.0	0.524	H	-62.8	-36.4	89.0	0.524	0.0		PCW	9.966	CD2	C40
2msc	1	P02647	100.0	4e-140	NMR	2015-06-03	LEU	B:133	C:529	83.0	0.488	H	-62.2	-28.2	83.0	0.488	0.0		PCW PCW	8.857 9.083	CD2 CD1	C26 C40
2msd	1	P02647	100.0	4e-140	NMR	2015-06-03	LEU	A:133	A:331	104.0	0.612	H	-59.9	-43.5	104.0	0.612	0.0		PCW PCW	9.640 8.774	CD1 CD2	C22 C25
2msd	1	P02647	100.0	4e-140	NMR	2015-06-03	LEU	B:133	C:529	91.0	0.535	H	-57.1	-35.7	91.0	0.535	0.0		PCW	9.107	CD1	C40
2mse	1	P02647	100.0	4e-140	NMR	2015-06-03	LEU	A:133	A:331	96.0	0.565	H	-65.1	-34.3	96.0	0.565	0.0		PCW	7.835	CD2	C47
2mse	1	P02647	100.0	4e-140	NMR	2015-06-03	LEU	B:133	C:529	96.0	0.565	H	-69.0	-35.5	96.0	0.565	0.0		PCW PCW PCW	6.780 8.659 9.867	CD2 CD2 CD2	C48 C28 C28
6cc9	1	P02647	100.0	4e-140	NMR	2018-09-05	LEU	A:133	A:331	102.0	0.6	H	-53.2	-42.8	102.0	0.6	0.0		PCW PCW	8.268 7.834	CD2 CD2	C48 C48
6cc9	1	P02647	100.0	4e-140	NMR	2018-09-05	LEU	C:133	C:529	96.0	0.565	H	-65.2	-41.7	96.0	0.565	0.0		PCW PCW	8.981 9.058	CD2 CD2	C48 C28
6cch	1	P02647	100.0	4e-140	NMR	2018-08-29	LEU	A:133	A:331	96.0	0.565	H	-65.2	-34.3	96.0	0.565	0.0
6cch	1	P02647	100.0	4e-140	NMR	2018-08-29	LEU	C:133	C:529	97.0	0.571	H	-69.0	-35.5	97.0	0.571	0.0		PCW PCW PCW	9.772 8.756 9.634	CD2 CD2 CD2	C48 C27 C27
6ccx	1	P02647	100.0	4e-140	NMR	2018-09-05	LEU	A:133	A:331	95.0	0.559	H	-64.5	-44.1	95.0	0.559	0.0
6ccx	1	P02647	100.0	4e-140	NMR	2018-09-05	LEU	C:133	C:529	78.0	0.459	H	-69.2	-25.5	78.0	0.459	0.0		PCW	9.712	CD2	C46
6w4e	1	P02647	100.0	4e-140	NMR	2020-04-15	LEU	A:133	A:331	105.0	0.618	H	-58.9	-46.1	105.0	0.618	0.0		PCW	9.133	CD2	C45
6w4e	1	P02647	100.0	4e-140	NMR	2020-04-15	LEU	B:133	D:529	84.0	0.494	H	-63.4	-38.7	84.0	0.494	0.0
6w4f	1	P02647	100.0	4e-140	NMR	2020-04-29	LEU	A:133	A:331	110.0	0.647	H	-61.9	-46.4	110.0	0.647	0.0
6w4f	1	P02647	100.0	4e-140	NMR	2020-04-29	LEU	B:133	D:529	77.0	0.453	H	-63.2	-37.2	77.0	0.453	0.0
7rsc	2	P02647	100.0	4e-140	NMR	2021-09-22	LEU	C:133	D:374	97.0	0.571	H	-68.9	-43.0	64.0	0.376	0.195	D:P02647:0.194	7Q9 7Q9 7Q9 7Q9 7Q9	3.428 6.794 8.785 5.145 3.742	CD2 CD2 CD2 CD2 CD2	C310 C317 C315 C318 C318
7rsc	2	P02647	100.0	4e-140	NMR	2021-09-22	LEU	D:133	E:674	101.0	0.594	H	-67.2	-43.6	101.0	0.594	0.0		7Q9 7Q9 17F 7Q9 7Q9	6.179 9.490 4.206 7.485 9.783	CD1 CD1 CD2 CD1 O	C318 C318 C12 C315 C33
7rse	2	P02647	100.0	4e-140	NMR	2021-09-22	LEU	C:133	D:374	94.0	0.553	H	-66.5	-33.2	55.0	0.324	0.229	D:P02647:0.229	7Q9 7Q9 7Q9 7Q9 7Q9	3.316 8.366 8.872 5.128 9.140	CD2 CD2 CD2 CD2 CD2	C39 C317 C315 C318 C318
7rse	2	P02647	100.0	4e-140	NMR	2021-09-22	LEU	D:133	E:674	100.0	0.588	H	-61.8	-48.2	100.0	0.588	0.0		7Q9 7Q9 7Q9 17F 7Q9 7Q9	8.778 6.467 9.776 3.429 9.887 9.096	CD1 CD1 CD2 CD2 CD2 O	C318 C318 C35 C12 C23 C33
7kjr	2	P02647	100.0	8e-133	EM	2020-11-18	LEU	C:141	NA:NA	DO	NA	DO	DO	DO	NA	NA	NA
7kjr	2	P02647	100.0	8e-133	EM	2020-11-18	LEU	D:141	NA:NA	DO	NA	DO	DO	DO	NA	NA	NA
3r2p	1	P02647	100.0	4e-132	X-RAY	2011-09-21	LEU	A:175	A:174	103.0	0.606	H	-67.4	-52.5	0.0	0.0	0.606	A:P02647:0.606	HOH	8.512	CD2	O
6clz	2	P02647	89.57	2e-127	NMR	2018-12-12	LEU	B:142	B:196	95.0	0.559	H	-70.5	-41.7	68.0	0.4	0.159	C:P02647:0.159	PX4 PX4 PX4 PX4 PX4 PX4 PX4 PX4 PX4	5.573 2.171 9.521 4.120 9.573 6.420 3.195 4.767 8.777	HD21 HD21 HD13 HD13 HD23 HD22 HD22 HD13 HD13	H20 H55 H32 H69 H70 H55 H38 H71 H70
6clz	2	P02647	89.57	2e-127	NMR	2018-12-12	LEU	C:142	C:196	125.0	0.735	H	-61.8	-40.5	125.0	0.735	0.0		PX4 PX4 PX4 PX4 PX4 PX4 PX4 PX4 PX4 PX4	4.735 5.789 9.382 2.201 7.122 2.899 6.412 3.186 9.703 7.857	N HG O HD23 HD12 HD21 HD23 HD22 HD21 HD22	H70 H63 H71 H66 H26 H50 H26 H61 H63 H64
6cm1	2	P02647	89.57	2e-127	NMR	2018-12-12	LEU	B:142	B:196	110.0	0.647	H	-64.7	-44.3	91.0	0.535	0.112	C:P02647:0.112	PX4 PX4 PX4 PX4 PX4 PX4 PX4 PX4 PX4	6.028 2.484 7.018 6.478 9.043 2.258 4.039 7.209 2.311	HD13 HD12 HD13 O HD11 HD21 HD13 HD23 HD11	H22 H57 H67 H68 H70 H32 H56 H62 H27
6cm1	2	P02647	89.57	2e-127	NMR	2018-12-12	LEU	C:142	C:196	73.0	0.429	H	-59.0	-44.2	73.0	0.429	0.0		PX4 PX4 PX4 PX4 PX4 PX4 PX4	8.513 5.868 4.897 9.647 9.398 2.280 5.254	HD13 HD13 HD22 HD22 HD12 HD23 HD23	H70 H72 H16 O8 H13 H10 H13
2n5e	1	P02647	88.36	1e-112	NMR	2016-12-21	LEU	A:98	A:174	88.0	0.518	H	-70.0	-49.8	88.0	0.518	0.0
2n5e	1	P02647	88.36	1e-112	NMR	2016-12-21	LEU	B:98	B:174	89.0	0.524	H	-69.3	-48.9	89.0	0.524	0.0

AlphaFold DB

Entity					Residue			Monomer					View
ID	Entity	Uniprot	Identity	Evalue	Name	Label	Auth	ASA	rASA	SS	φ	ψ	View
af-p02647-f1	1	P02647	100.0	0.0	LEU	A:198	A:198	115.0	0.676	H	-66.4	-44.4

wupsivus
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