wupsivus

Variant

Genome	Chromosome	Position	VCF ID	Ref	Alt	mRNA Change	mRNA Info
GRCh37	chr11	116706738	.	C	A	CCDS8378.1:NM_000039.1:c.590cGc>cTc_NP_000030.1:p.197R>L	Homo sapiens apolipoprotein A-I (APOA1), mRNA.

pdb_id	:
label_asym_id	:
label_seq_id	:
label_comp_id	:
auth_asym_id	:
auth_seq_id	:

alphafold_id	:
label_asym_id	:
label_seq_id	:
label_comp_id	:
auth_asym_id	:
auth_seq_id	:

PDB

Entity							Residue			Monomer					BioUnit				Ligand				View
PDB	Entity	Uniprot	Identity	Evalue	ExpMethod	Date	Name	Label	Auth	ASA	rASA	SS	φ	ψ	ASA	rASA	ΔASA	Interaction	Name	Distance	Atom(p)	Atom(l)	View
3k2s	1	P02647	100.0	4e-177	SOLUTION SCATTERING	2010-04-07	ARG	A:173	A:173	193.0	0.858		-143.4	-123.8	129.0	0.573	0.285	B:P02647:0.284	POV POV POV POV	4.306 6.033 8.318 9.913	O NH2 NH2 NH1	O13 C29 C218 C35
3k2s	1	P02647	100.0	4e-177	SOLUTION SCATTERING	2010-04-07	ARG	B:173	B:173	186.0	0.827		-59.1	-52.3	130.0	0.578	0.249	A:P02647:0.249	POV POV POV POV POV POV CLR	5.593 9.165 3.346 8.850 3.705 6.542 9.835	NH1 CD NH2 NH1 CB N N	C215 C216 C37 C35 C34 O13 C19
1av1	1	P02647	100.0	3e-142	X-RAY	1998-02-04	ARG	A:131	A:173	156.0	0.693	H	-83.7	-72.6	131.0	0.582	0.111	B:P02647:0.111
							ARG	B:131	B:173	149.0	0.662	H	-63.5	-61.0	106.0	0.471	0.191	A:P02647:0.191
							ARG	C:131	C:173	154.0	0.684	H	-83.6	-72.6	130.0	0.578	0.106	D:P02647:0.107
							ARG	D:131	D:173	146.0	0.649	H	-63.4	-61.1	103.0	0.458	0.191	C:P02647:0.191
4v6m	5	P02647	100.0	3e-142	EM	2014-07-09	ARG	E:130	A0:173	142.0	0.631	T	-104.9	-7.0	104.0	0.462	0.169	F:P02647:0.169	PGV PEV PEV PGV PEV PEV PGV PEV PEV	8.010 8.383 3.648 8.436 8.302 9.619 3.608 3.947 7.302	O NH2 NH2 O NH2 NH1 NH1 CA O	O06 C40 C44 C18 C36 C25 C18 C23 C26
4v6m	5	P02647	100.0	3e-142	EM	2014-07-09	ARG	F:130	A1:173	156.0	0.693	H	65.5	37.9	62.0	0.276	0.417	E:P02647:0.418	PEV PEV PEV PEV PEV	8.144 6.959 4.915 3.502 3.644	O NH2 O O NH2	C26 C22 C17 C19 C48
6pts	1	P02647	100.0	2e-140	NMR	2020-05-13	ARG	A:130	A:330	160.0	0.711	H	-66.1	-50.2	27.0	0.12	0.591	B:P02647:0.591	PCW PCW PCW	7.560 6.106 9.891	HH11 NH2 HH12	C28 C26 C48
6pts	1	P02647	100.0	2e-140	NMR	2020-05-13	ARG	B:130	C:528	100.0	0.444	H	-67.2	-45.9	3.0	0.013	0.431	A:P02647:0.431	PCW PCW	9.594 4.623	HH11 HH12	C45 C28
6ptw	1	P02647	100.0	2e-140	NMR	2020-05-13	ARG	A:130	A:330	157.0	0.698	H	-60.4	-47.9	42.0	0.187	0.511	B:P02647:0.511	PCW PCW	4.930 5.712	HH11 HH11	C27 C27
6ptw	1	P02647	100.0	2e-140	NMR	2020-05-13	ARG	B:130	C:528	87.0	0.387	H	-65.2	-46.8	7.0	0.031	0.356	A:P02647:0.356	PCW	4.782	HH12	C28
2msc	1	P02647	100.0	4e-140	NMR	2015-06-03	ARG	A:132	A:330	136.0	0.604	H	-64.7	-42.5	16.0	0.071	0.533	B:P02647:0.533	PCW	7.058	NH1	C25
2msc	1	P02647	100.0	4e-140	NMR	2015-06-03	ARG	B:132	C:528	108.0	0.48	H	-65.3	-49.4	10.0	0.044	0.436	A:P02647:0.436	PCW	4.391	NH1	C26
2msd	1	P02647	100.0	4e-140	NMR	2015-06-03	ARG	A:132	A:330	150.0	0.667	H	-60.4	-49.3	30.0	0.133	0.534	B:P02647:0.533	PCW PCW	6.711 7.243	NE NH1	C26 C27
2msd	1	P02647	100.0	4e-140	NMR	2015-06-03	ARG	B:132	C:528	91.0	0.404	H	-69.6	-49.6	4.0	0.018	0.386	A:P02647:0.387	PCW	5.120	NH1	C28
2mse	1	P02647	100.0	4e-140	NMR	2015-06-03	ARG	A:132	A:330	163.0	0.724	H	-65.2	-45.0	31.0	0.138	0.586	B:P02647:0.587	PCW	7.470	NH1	C28
2mse	1	P02647	100.0	4e-140	NMR	2015-06-03	ARG	B:132	C:528	97.0	0.431	H	-61.6	-43.2	8.0	0.036	0.395	A:P02647:0.396	PCW PCW	7.799 7.618	O NH1	C48 C28
6cc9	1	P02647	100.0	4e-140	NMR	2018-09-05	ARG	A:132	A:330	156.0	0.693	H	-63.0	-54.0	29.0	0.129	0.564	C:P02647:0.564	PCW	8.353	NH1	C28
6cc9	1	P02647	100.0	4e-140	NMR	2018-09-05	ARG	C:132	C:528	88.0	0.391	H	-63.2	-41.9	17.0	0.076	0.315	A:P02647:0.316	PCW PCW	9.369 9.917	O NH1	C48 C28
6cch	1	P02647	100.0	4e-140	NMR	2018-08-29	ARG	A:132	A:330	162.0	0.72	H	-65.2	-44.9	32.0	0.142	0.578	C:P02647:0.578	PCW	9.466	NH1	C28
6cch	1	P02647	100.0	4e-140	NMR	2018-08-29	ARG	C:132	C:528	98.0	0.436	H	-61.6	-43.2	8.0	0.036	0.4	A:P02647:0.4	PCW	3.983	NH1	C28
6ccx	1	P02647	100.0	4e-140	NMR	2018-09-05	ARG	A:132	A:330	150.0	0.667	H	-62.9	-46.4	31.0	0.138	0.529	C:P02647:0.529	PCW PCW	9.378 8.431	NH2 NH1	C24 C28
6ccx	1	P02647	100.0	4e-140	NMR	2018-09-05	ARG	C:132	C:528	105.0	0.467	H	-76.3	-38.2	6.0	0.027	0.44	A:P02647:0.44	PCW	9.525	NH1	C27
6w4e	1	P02647	100.0	4e-140	NMR	2020-04-15	ARG	A:132	A:330	169.0	0.751	H	-61.8	-46.5	33.0	0.147	0.604	B:P02647:0.604	PCW PCW	6.204 7.984	HH11 HH11	C27 C28
6w4e	1	P02647	100.0	4e-140	NMR	2020-04-15	ARG	B:132	D:528	100.0	0.444	H	-67.7	-41.3	4.0	0.018	0.426	A:P02647:0.427	PCW	5.428	HH11	C27
6w4f	1	P02647	100.0	4e-140	NMR	2020-04-29	ARG	A:132	A:330	138.0	0.613	H	-62.2	-45.0	38.0	0.169	0.444	B:P02647:0.444	PCW PCW	6.468 7.681	HE HH11	C26 C27
6w4f	1	P02647	100.0	4e-140	NMR	2020-04-29	ARG	B:132	D:528	102.0	0.453	H	-70.6	-41.9	1.0	0.004	0.449	A:P02647:0.449	PCW	9.094	HH12	C47
7rsc	2	P02647	100.0	4e-140	NMR	2021-09-22	ARG	C:132	D:373	126.0	0.56	H	-65.9	-41.0	111.0	0.493	0.067	D:P02647:0.067	7Q9 7Q9 7Q9 7Q9	6.977 9.881 9.966 7.779	C H C H	C310 C311 C318 C318
7rsc	2	P02647	100.0	4e-140	NMR	2021-09-22	ARG	D:132	E:673	116.0	0.516	H	-60.9	-40.7	55.0	0.244	0.272	C:P02647:0.271	7Q9 17F 7Q9	7.507 9.563 8.610	CD C H	C318 O8 C23
7rse	2	P02647	100.0	4e-140	NMR	2021-09-22	ARG	C:132	D:373	148.0	0.658	H	-65.0	-41.7	144.0	0.64	0.018	D:P02647:0.018	7Q9	6.882	N	C35
7rse	2	P02647	100.0	4e-140	NMR	2021-09-22	ARG	D:132	E:673	98.0	0.436	H	-64.6	-37.4	60.0	0.267	0.169	C:P02647:0.169	7Q9 7Q9 17F	6.881 6.603 8.665	HH12 HH11 C	C318 C318 C2X
7kjr	2	P02647	100.0	8e-133	EM	2020-11-18	ARG	C:140	NA:NA	DO	NA	DO	DO	DO	NA	NA	NA
7kjr	2	P02647	100.0	8e-133	EM	2020-11-18	ARG	D:140	NA:NA	DO	NA	DO	DO	DO	NA	NA	NA
3r2p	1	P02647	100.0	4e-132	X-RAY	2011-09-21	ARG	A:174	A:173	140.0	0.622	H	-71.2	-36.1	89.0	0.396	0.226	A:P02647:0.227	HOH	9.582	N	O
6clz	2	P02647	89.57	2e-127	NMR	2018-12-12	ARG	B:141	B:195	194.0	0.862	H	-53.8	-49.1	90.0	0.4	0.462	C:P02647:0.462	PX4 PX4 PX4	6.348 9.608 6.484	H HD3 HE	H58 O6 H43
6clz	2	P02647	89.57	2e-127	NMR	2018-12-12	ARG	C:141	C:195	142.0	0.631	H	-55.0	-51.1	82.0	0.364	0.267	B:P02647:0.267	PX4 PX4 PX4 PX4 PX4 PX4 PX4 PX4 PX4 PX4	2.560 2.559 6.979 8.301 9.149 2.204 9.000 6.513 6.549 7.341	HD3 HG3 HG3 HG3 O HB3 HB2 HB3 HG3 HB3	H71 H61 H21 H69 H70 H68 H39 H58 H43 H69
6cm1	2	P02647	89.57	2e-127	NMR	2018-12-12	ARG	B:141	B:195	182.0	0.809	H	-63.3	-44.6	59.0	0.262	0.547	C:P02647:0.547	PX4 PX4 PX4 PX4 PX4 PX4	9.010 6.635 9.618 6.283 6.484 8.021	H N O O HD3 HB3	O6 H46 H68 H27 H50 H25
6cm1	2	P02647	89.57	2e-127	NMR	2018-12-12	ARG	C:141	C:195	137.0	0.609	H	-61.0	-37.1	61.0	0.271	0.338	B:P02647:0.338	PX4 PX4 PX4 PX4 PX4 PX4 PX4	8.389 3.492 7.033 7.848 7.807 9.001 9.426	HH12 HH12 HH12 HH22 HH21 C HH12	H61 H68 H39 H28 H42 H10 H21
2n5e	1	P02647	88.36	1e-112	NMR	2016-12-21	ARG	A:97	A:173	162.0	0.72	H	-64.5	-40.1	162.0	0.72	0.0
2n5e	1	P02647	88.36	1e-112	NMR	2016-12-21	ARG	B:97	B:173	162.0	0.72	H	-64.3	-41.5	162.0	0.72	0.0

AlphaFold DB

Entity					Residue			Monomer					View
ID	Entity	Uniprot	Identity	Evalue	Name	Label	Auth	ASA	rASA	SS	φ	ψ	View
af-p02647-f1	1	P02647	100.0	0.0	ARG	A:197	A:197	166.0	0.738	H	-63.2	-39.0

wupsivus
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