wupsivus

Variant

Genome	Chromosome	Position	VCF ID	Ref	Alt	mRNA Change	mRNA Info
GRCh37	chr11	116706789	.	A	C	CCDS8378.1:NM_000039.1:c.539gTg>gGg_NP_000030.1:p.180V>G	Homo sapiens apolipoprotein A-I (APOA1), mRNA.

pdb_id	:
label_asym_id	:
label_seq_id	:
label_comp_id	:
auth_asym_id	:
auth_seq_id	:

alphafold_id	:
label_asym_id	:
label_seq_id	:
label_comp_id	:
auth_asym_id	:
auth_seq_id	:

PDB

Entity							Residue			Monomer					BioUnit				Ligand				View
PDB	Entity	Uniprot	Identity	Evalue	ExpMethod	Date	Name	Label	Auth	ASA	rASA	SS	φ	ψ	ASA	rASA	ΔASA	Interaction	Name	Distance	Atom(p)	Atom(l)	View
3k2s	1	P02647	100.0	4e-177	SOLUTION SCATTERING	2010-04-07	VAL	A:156	A:156	78.0	0.503	S	-142.8	95.5	78.0	0.503	0.0		POV POV POV POV POV POV POV	7.826 8.827 3.650 8.259 5.968 7.342 4.207	CG1 CG2 CG1 O CG1 CG1 N	C315 C27 C38 C34 C39 C38 C27
3k2s	1	P02647	100.0	4e-177	SOLUTION SCATTERING	2010-04-07	VAL	B:156	B:156	124.0	0.8	T	-156.6	91.9	124.0	0.8	0.0		POV POV POV POV POV POV POV POV POV POV	8.823 7.474 8.450 8.629 7.250 3.802 8.274 3.433 7.759 3.144	CG1 CG1 CG1 CG1 CG2 CG2 O CG1 CG2 O	C316 C316 C316 C218 C311 C212 C311 C216 C313 C29
1av1	1	P02647	100.0	3e-142	X-RAY	1998-02-04	VAL	A:114	A:156	94.0	0.606	H	-55.2	-55.4	17.0	0.11	0.496	D:P02647:0.368 B:P02647:0.135
							VAL	B:114	B:156	83.0	0.535	H	-57.7	-70.9	31.0	0.2	0.335	A:P02647:0.084 C:P02647:0.252
							VAL	C:114	C:156	93.0	0.6	H	-55.2	-55.4	15.0	0.097	0.503	D:P02647:0.129 B:P02647:0.374
							VAL	D:114	D:156	83.0	0.535	H	-57.8	-70.9	30.0	0.194	0.341	A:P02647:0.258 C:P02647:0.084
4v6m	5	P02647	100.0	3e-142	EM	2014-07-09	VAL	E:113	A0:156	100.0	0.645	I	68.3	95.8	100.0	0.645	0.0		PEV PEV PEV PEV PEV PEV PEV	4.020 8.219 3.798 7.496 4.309 8.093 8.924	CG2 N N CG1 CB N CG2	O11 C47 O11 C34 C43 C26 C24
4v6m	5	P02647	100.0	3e-142	EM	2014-07-09	VAL	F:113	A1:156	92.0	0.594	G	-59.7	134.5	92.0	0.594	0.0		PGV PEV PEV PEV	6.106 9.739 3.380 9.577	CB CG1 O CG2	O13 C5 C48 C39
6pts	1	P02647	100.0	2e-140	NMR	2020-05-13	VAL	A:113	A:313	72.0	0.465	H	-75.1	-33.2	72.0	0.465	0.0		PCW PCW	4.406 6.814	CG2 CG2	C43 C21
6pts	1	P02647	100.0	2e-140	NMR	2020-05-13	VAL	B:113	C:511	70.0	0.452	H	-61.8	-43.7	70.0	0.452	0.0
6ptw	1	P02647	100.0	2e-140	NMR	2020-05-13	VAL	A:113	A:313	81.0	0.523	H	-71.6	-36.5	81.0	0.523	0.0		PCW PCW	8.131 6.488	CG2 CG2	C41 C26
6ptw	1	P02647	100.0	2e-140	NMR	2020-05-13	VAL	B:113	C:511	65.0	0.419	H	-63.6	-43.7	65.0	0.419	0.0
2msc	1	P02647	100.0	4e-140	NMR	2015-06-03	VAL	A:115	A:313	80.0	0.516	H	-67.6	-46.9	80.0	0.516	0.0		PCW PCW	7.899 4.090	CG1 CG2	C14 C28
2msc	1	P02647	100.0	4e-140	NMR	2015-06-03	VAL	B:115	C:511	67.0	0.432	H	-65.8	-43.0	67.0	0.432	0.0		PCW	7.941	CG2	C28
2msd	1	P02647	100.0	4e-140	NMR	2015-06-03	VAL	A:115	A:313	65.0	0.419	H	-74.6	-33.6	65.0	0.419	0.0		PCW PCW	6.816 7.272	CG2 CG2	C41 C27
2msd	1	P02647	100.0	4e-140	NMR	2015-06-03	VAL	B:115	C:511	67.0	0.432	H	-67.0	-44.7	67.0	0.432	0.0		PCW	7.896	CG2	C23
2mse	1	P02647	100.0	4e-140	NMR	2015-06-03	VAL	A:115	A:313	65.0	0.419	H	-73.8	-41.8	65.0	0.419	0.0		PCW	7.435	CG2	C23
2mse	1	P02647	100.0	4e-140	NMR	2015-06-03	VAL	B:115	C:511	63.0	0.406	I	-67.2	-44.3	63.0	0.406	0.0		PCW	7.440	CG2	C22
6cc9	1	P02647	100.0	4e-140	NMR	2018-09-05	VAL	A:115	A:313	83.0	0.535	H	-70.5	-41.7	83.0	0.535	0.0		PCW	8.001	CG2	C24
6cc9	1	P02647	100.0	4e-140	NMR	2018-09-05	VAL	C:115	C:511	90.0	0.581	H	-68.9	-49.7	90.0	0.581	0.0		PCW	8.303	CG2	C21
6cch	1	P02647	100.0	4e-140	NMR	2018-08-29	VAL	A:115	A:313	65.0	0.419	H	-73.7	-41.8	65.0	0.419	0.0		PCW PCW	6.945 6.919	CG1 CG2	C17 C22
6cch	1	P02647	100.0	4e-140	NMR	2018-08-29	VAL	C:115	C:511	62.0	0.4	I	-67.2	-44.3	62.0	0.4	0.0		PCW	8.128	CG2	C22
6ccx	1	P02647	100.0	4e-140	NMR	2018-09-05	VAL	A:115	A:313	76.0	0.49	H	-78.9	-39.3	76.0	0.49	0.0		PCW PCW	9.217 9.196	CG1 CG2	C13 C20
6ccx	1	P02647	100.0	4e-140	NMR	2018-09-05	VAL	C:115	C:511	66.0	0.426	H	-63.2	-46.7	66.0	0.426	0.0		PCW	7.858	CG2	C22
6w4e	1	P02647	100.0	4e-140	NMR	2020-04-15	VAL	A:115	A:313	71.0	0.458	H	-79.4	-38.4	71.0	0.458	0.0		PCW PCW	6.203 8.430	CG2 N	C41 C27
6w4e	1	P02647	100.0	4e-140	NMR	2020-04-15	VAL	B:115	D:511	68.0	0.439	H	-62.8	-39.8	68.0	0.439	0.0
6w4f	1	P02647	100.0	4e-140	NMR	2020-04-29	VAL	A:115	A:313	80.0	0.516	H	-73.4	-39.3	80.0	0.516	0.0		PCW PCW 17F	4.750 7.640 9.975	CG2 N CG2	C43 C28 C29
6w4f	1	P02647	100.0	4e-140	NMR	2020-04-29	VAL	B:115	D:511	67.0	0.432	H	-62.9	-48.5	67.0	0.432	0.0
7rsc	2	P02647	100.0	4e-140	NMR	2021-09-22	VAL	C:115	D:356	90.0	0.581	H	-60.6	-43.2	90.0	0.581	0.0		7Q9 7Q9 7Q9 7Q9 7Q9 7Q9	9.380 8.209 5.941 5.033 9.259 8.542	CG1 CG1 CG2 CG2 O CG2	C34 C32 C316 C313 O22 C315
7rsc	2	P02647	100.0	4e-140	NMR	2021-09-22	VAL	D:115	E:656	75.0	0.484	H	-59.2	-41.1	75.0	0.484	0.0		7Q9 17F 17F	5.834 4.815 5.494	CG2 CG1 CG1	C23 C37 C33
7rse	2	P02647	100.0	4e-140	NMR	2021-09-22	VAL	C:115	D:356	90.0	0.581	H	-62.3	-39.0	90.0	0.581	0.0		7Q9 7Q9 7Q9 7Q9 7Q9 7Q9 7Q9	6.812 7.514 6.348 9.840 7.326 7.629 7.061	CG1 CG2 CG1 O CG1 CG2 CG1	C33 C316 C39 C23 C318 C318 C316
7rse	2	P02647	100.0	4e-140	NMR	2021-09-22	VAL	D:115	E:656	91.0	0.587	H	-60.6	-40.9	88.0	0.568	0.019	C:P02647:0.019	7Q9 17F 17F	6.178 3.476 5.131	CG2 CG1 CG1	C22 C36 C34
7kjr	2	P02647	100.0	8e-133	EM	2020-11-18	VAL	C:123	NA:NA	DO	NA	DO	DO	DO	NA	NA	NA
7kjr	2	P02647	100.0	8e-133	EM	2020-11-18	VAL	D:123	NA:NA	DO	NA	DO	DO	DO	NA	NA	NA
3r2p	1	P02647	100.0	4e-132	X-RAY	2011-09-21	VAL	A:157	A:156	87.0	0.561	H	-71.9	-42.4	1.0	0.006	0.555	A:P02647:0.555	HOH	4.238	CG1	O
6clz	2	P02647	89.57	2e-127	NMR	2018-12-12	VAL	B:124	B:178	82.0	0.529	H	-55.7	-47.9	82.0	0.529	0.0		PX4 PX4 PX4 PX4 PX4 PX4 PX4 PX4	7.594 2.307 2.172 6.071 9.635 8.318 5.756 2.361	HG22 HG11 HG22 HG13 HG22 O HG21 HA	H19 H30 H49 H19 H45 H72 H69 H44
6clz	2	P02647	89.57	2e-127	NMR	2018-12-12	VAL	C:124	C:178	66.0	0.426	H	-76.9	-35.9	66.0	0.426	0.0		PX4 PX4 PX4 PX4 PX4 PX4 PX4 PX4 PX4 PX4 PX4 PX4	6.228 5.218 8.864 2.286 2.123 5.476 9.015 6.251 9.931 6.729 4.852 9.597	HG21 HG23 HG21 HG22 HG13 HG22 HG13 HG23 HG22 HG12 HG13 HG22	H71 H39 H35 H22 H45 H60 H30 H63 H56 H26 H22 H70
6cm1	2	P02647	89.57	2e-127	NMR	2018-12-12	VAL	B:124	B:178	77.0	0.497	H	-63.4	-51.1	77.0	0.497	0.0		PX4 PX4 PX4 PX4 PX4 PX4 PX4	6.955 2.278 2.532 7.201 9.158 7.083 6.014	HG21 HG23 HG13 HG21 HG21 HG23 HG21	H52 H30 H21 H22 H35 H30 H41
6cm1	2	P02647	89.57	2e-127	NMR	2018-12-12	VAL	C:124	C:178	85.0	0.548	H	-58.4	-46.8	85.0	0.548	0.0		PX4 PX4 PX4 PX4 PX4 PX4 PX4 PX4 PX4	3.806 9.906 7.891 2.939 4.475 7.923 8.101 7.657 5.136	N HG21 HG23 HG22 HG22 HG13 HG23 HG22 HG12	H70 H70 H44 O2 H10 H25 H45 H17 H15
2n5e	1	P02647	88.36	1e-112	NMR	2016-12-21	VAL	A:80	A:156	71.0	0.458	H	-66.4	-41.6	40.0	0.258	0.2	B:P02647:0.2
2n5e	1	P02647	88.36	1e-112	NMR	2016-12-21	VAL	B:80	B:156	68.0	0.439	H	-65.2	-41.4	24.0	0.155	0.284	A:P02647:0.284

AlphaFold DB

Entity					Residue			Monomer					View
ID	Entity	Uniprot	Identity	Evalue	Name	Label	Auth	ASA	rASA	SS	φ	ψ	View
af-p02647-f1	1	P02647	100.0	0.0	VAL	A:180	A:180	93.0	0.6	H	-64.3	-41.3

wupsivus
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