wupsivus

Variant

Genome	Chromosome	Position	VCF ID	Ref	Alt	mRNA Change	mRNA Info
GRCh37	chr11	116706792	.	T	A	CCDS8378.1:NM_000039.1:c.536cAt>cTt_NP_000030.1:p.179H>L	Homo sapiens apolipoprotein A-I (APOA1), mRNA.

pdb_id	:
label_asym_id	:
label_seq_id	:
label_comp_id	:
auth_asym_id	:
auth_seq_id	:

alphafold_id	:
label_asym_id	:
label_seq_id	:
label_comp_id	:
auth_asym_id	:
auth_seq_id	:

PDB

Entity							Residue			Monomer					BioUnit				Ligand				View
PDB	Entity	Uniprot	Identity	Evalue	ExpMethod	Date	Name	Label	Auth	ASA	rASA	SS	φ	ψ	ASA	rASA	ΔASA	Interaction	Name	Distance	Atom(p)	Atom(l)	View
3k2s	1	P02647	100.0	4e-177	SOLUTION SCATTERING	2010-04-07	HIS	A:155	A:155	114.0	0.585	T	115.2	-11.8	60.0	0.308	0.277	B:P02647:0.277	POV POV POV POV POV POV POV POV CLR	9.883 8.169 3.425 9.890 9.379 9.280 8.831 3.349 6.525	NE2 NE2 NE2 O CE1 NE2 O O ND1	C316 C27 C316 C39 C213 C217 C311 C211 C27
3k2s	1	P02647	100.0	4e-177	SOLUTION SCATTERING	2010-04-07	HIS	B:155	B:155	129.0	0.662	H	-64.1	-53.3	87.0	0.446	0.216	A:P02647:0.215	POV POV POV POV POV POV POV POV POV	7.129 4.241 9.220 6.509 4.333 6.558 4.290 7.797 7.584	ND1 ND1 O CE1 NE2 O O CD2 C	C316 C218 C316 C218 C310 C38 C213 C313 C29
1av1	1	P02647	100.0	3e-142	X-RAY	1998-02-04	HIS	A:113	A:155	137.0	0.703	H	-46.3	-37.8	71.0	0.364	0.339	B:P02647:0.338
							HIS	B:113	B:155	138.0	0.708	H	-41.3	-45.0	39.0	0.2	0.508	A:P02647:0.508
							HIS	C:113	C:155	137.0	0.703	H	-46.3	-37.8	73.0	0.374	0.329	D:P02647:0.328
							HIS	D:113	D:155	137.0	0.703	H	-41.3	-45.0	39.0	0.2	0.503	C:P02647:0.503
4v6m	5	P02647	100.0	3e-142	EM	2014-07-09	HIS	E:112	A0:155	150.0	0.769	I	67.6	37.7	106.0	0.544	0.225	F:P02647:0.226	PEV PEV PEV PEV PEV PEV PEV PEV	4.112 3.726 3.578 8.947 4.383 6.325 4.560 6.627	CA CE1 N O O CE1 CG ND1	C48 C48 O11 C36 C43 C45 C26 C25
4v6m	5	P02647	100.0	3e-142	EM	2014-07-09	HIS	F:112	A1:155	150.0	0.769	T	-56.3	-30.3	122.0	0.626	0.143	E:P02647:0.144	PGV PEV PEV PGV	6.499 5.753 7.518 9.918	N N N N	O02 C48 C40 C7
6pts	1	P02647	100.0	2e-140	NMR	2020-05-13	HIS	A:112	A:312	104.0	0.533	H	-58.4	-47.6	12.0	0.062	0.471	B:P02647:0.472	PCW PCW 17F	7.827 6.164 7.930	C CB CD2	C43 C26 C42
6pts	1	P02647	100.0	2e-140	NMR	2020-05-13	HIS	B:112	C:510	128.0	0.656	H	-76.9	-52.0	45.0	0.231	0.425	A:P02647:0.426	PCW	9.786	CE1	C45
6ptw	1	P02647	100.0	2e-140	NMR	2020-05-13	HIS	A:112	A:312	108.0	0.554	H	-58.1	-49.9	17.0	0.087	0.467	B:P02647:0.467	PCW 17F	5.793 7.434	CD2 HE2	C24 C39
6ptw	1	P02647	100.0	2e-140	NMR	2020-05-13	HIS	B:112	C:510	131.0	0.672	H	-71.2	-50.5	50.0	0.256	0.416	A:P02647:0.415	PCW	8.095	CE1	C45
2msc	1	P02647	100.0	4e-140	NMR	2015-06-03	HIS	A:114	A:312	102.0	0.523	T	-109.1	-78.5	21.0	0.108	0.415	B:P02647:0.415	PCW PCW	9.662 5.671	O CB	C21 C28
2msc	1	P02647	100.0	4e-140	NMR	2015-06-03	HIS	B:114	C:510	129.0	0.662	H	-89.6	-50.5	39.0	0.2	0.462	A:P02647:0.462
2msd	1	P02647	100.0	4e-140	NMR	2015-06-03	HIS	A:114	A:312	103.0	0.528	H	-55.1	-53.3	13.0	0.067	0.461	B:P02647:0.462	PCW PCW 17F	8.313 5.988 8.843	CB CD2 CD2	C41 C26 C42
2msd	1	P02647	100.0	4e-140	NMR	2015-06-03	HIS	B:114	C:510	133.0	0.682	H	-79.3	-45.0	38.0	0.195	0.487	A:P02647:0.487
2mse	1	P02647	100.0	4e-140	NMR	2015-06-03	HIS	A:114	A:312	129.0	0.662	H	-56.3	-54.4	27.0	0.138	0.524	B:P02647:0.523	PCW	9.259	O	C23
2mse	1	P02647	100.0	4e-140	NMR	2015-06-03	HIS	B:114	C:510	131.0	0.672	I	-95.2	-52.1	57.0	0.292	0.38	A:P02647:0.379	PCW	9.283	ND1	C23
6cc9	1	P02647	100.0	4e-140	NMR	2018-09-05	HIS	A:114	A:312	122.0	0.626	H	-54.4	-53.2	19.0	0.097	0.529	C:P02647:0.528	PCW	9.517	CB	C25
6cc9	1	P02647	100.0	4e-140	NMR	2018-09-05	HIS	C:114	C:510	127.0	0.651	T	-128.6	-67.6	55.0	0.282	0.369	A:P02647:0.369
6cch	1	P02647	100.0	4e-140	NMR	2018-08-29	HIS	A:114	A:312	128.0	0.656	H	-56.3	-54.4	30.0	0.154	0.502	C:P02647:0.503	PCW PCW 17F	7.020 3.772 9.065	O CD2 CD2	C19 C24 C27
6cch	1	P02647	100.0	4e-140	NMR	2018-08-29	HIS	C:114	C:510	134.0	0.687	I	-95.2	-52.1	57.0	0.292	0.395	A:P02647:0.395	PCW	9.494	ND1	C23
6ccx	1	P02647	100.0	4e-140	NMR	2018-09-05	HIS	A:114	A:312	136.0	0.697	H	-56.0	-53.5	29.0	0.149	0.548	C:P02647:0.549	PCW	9.966	CD2	C24
6ccx	1	P02647	100.0	4e-140	NMR	2018-09-05	HIS	C:114	C:510	129.0	0.662	H	-78.7	-54.6	42.0	0.215	0.447	A:P02647:0.446	PCW	8.512	ND1	C27
6w4e	1	P02647	100.0	4e-140	NMR	2020-04-15	HIS	A:114	A:312	128.0	0.656	H	-53.6	-49.7	32.0	0.164	0.492	B:P02647:0.492	PCW PCW 17F 17F	6.850 3.673 8.979 6.359	CD2 HE2 HE2 HE2	C41 C28 C23 C42
6w4e	1	P02647	100.0	4e-140	NMR	2020-04-15	HIS	B:114	D:510	129.0	0.662	H	-73.4	-56.8	49.0	0.251	0.411	A:P02647:0.41
6w4f	1	P02647	100.0	4e-140	NMR	2020-04-29	HIS	A:114	A:312	116.0	0.595	H	-57.9	-51.8	13.0	0.067	0.528	B:P02647:0.528	PCW PCW 17F	7.072 5.944 6.926	O CD2 HE2	C43 C26 C42
6w4f	1	P02647	100.0	4e-140	NMR	2020-04-29	HIS	B:114	D:510	131.0	0.672	H	-71.2	-43.9	39.0	0.2	0.472	A:P02647:0.472	PCW	9.876	CE1	C45
7rsc	2	P02647	100.0	4e-140	NMR	2021-09-22	HIS	C:114	D:355	127.0	0.651	H	-64.7	-42.5	38.0	0.195	0.456	D:P02647:0.456	7Q9 7Q9 7Q9	7.504 7.765 4.952	CD2 N HE2	C318 C23 C313
7rsc	2	P02647	100.0	4e-140	NMR	2021-09-22	HIS	D:114	E:655	135.0	0.692	H	-71.3	-45.9	16.0	0.082	0.61	C:P02647:0.61	17F 7Q9 17F 17F	7.858 7.734 9.462 8.936	HE2 H CD2 O	C25 C23 C42 C34
7rse	2	P02647	100.0	4e-140	NMR	2021-09-22	HIS	C:114	D:355	129.0	0.662	H	-64.2	-43.0	35.0	0.179	0.483	D:P02647:0.482	7Q9 7Q9 7Q9	8.931 4.263 6.800	H HE2 HE2	C316 C318 C313
7rse	2	P02647	100.0	4e-140	NMR	2021-09-22	HIS	D:114	E:655	143.0	0.733	H	-69.3	-40.7	22.0	0.113	0.62	C:P02647:0.621	7Q9 17F 17F	7.970 6.570 8.314	H C O	C23 C36 C34
7kjr	2	P02647	100.0	8e-133	EM	2020-11-18	HIS	C:122	NA:NA	DO	NA	DO	DO	DO	NA	NA	NA
7kjr	2	P02647	100.0	8e-133	EM	2020-11-18	HIS	D:122	NA:NA	DO	NA	DO	DO	DO	NA	NA	NA
3r2p	1	P02647	100.0	4e-132	X-RAY	2011-09-21	HIS	A:156	A:155	122.0	0.626	H	-59.2	-40.2	42.0	0.215	0.411	A:P02647:0.41	HOH	7.196	NE2	O
6clz	2	P02647	89.57	2e-127	NMR	2018-12-12	HIS	B:123	B:177	134.0	0.687	H	-60.3	-39.1	22.0	0.113	0.574	C:P02647:0.574	PX4 PX4 PX4 PX4 PX4	5.853 6.438 8.171 6.456 2.179	O C O HB3 HB2	H34 H49 H70 H68 H40
6clz	2	P02647	89.57	2e-127	NMR	2018-12-12	HIS	C:123	C:177	101.0	0.518	H	-79.0	-33.2	54.0	0.277	0.241	B:P02647:0.241	PX4 PX4 PX4 PX4 PX4 PX4 PX4 PX4 PX4 PX4	8.172 2.556 2.600 7.941 7.465 2.890 5.290 8.087 6.382 8.532	HD2 HD2 HB2 HD2 HB2 HD2 O HD2 HB3 HD2	H70 H71 H41 H35 H45 H33 H43 H68 H63 H42
6cm1	2	P02647	89.57	2e-127	NMR	2018-12-12	HIS	B:123	B:177	111.0	0.569	H	-60.8	-36.1	58.0	0.297	0.272	C:P02647:0.272	PX4 PX4 PX4 PX4 PX4	6.910 4.492 2.499 7.394 7.072	HD2 HB3 HD2 HB3 HB2	H57 H45 H71 H26 H22
6cm1	2	P02647	89.57	2e-127	NMR	2018-12-12	HIS	C:123	C:177	104.0	0.533	H	-57.0	-37.0	78.0	0.4	0.133	B:P02647:0.133	PX4 PX4 PX4 PX4 PX4 PX4 PX4 PX4 PX4	2.111 8.860 3.800 5.421 5.700 9.010 9.466 4.655 9.413	HB3 HB3 HD2 O HB2 O HD2 HD2 HB3	H70 H72 H43 H60 H6 H29 H72 H44 H32
2n5e	1	P02647	88.36	1e-112	NMR	2016-12-21	HIS	A:79	A:155	99.0	0.508	H	-69.3	-50.7	99.0	0.508	0.0
2n5e	1	P02647	88.36	1e-112	NMR	2016-12-21	HIS	B:79	B:155	100.0	0.513	H	-68.9	-50.1	100.0	0.513	0.0

AlphaFold DB

Entity					Residue			Monomer					View
ID	Entity	Uniprot	Identity	Evalue	Name	Label	Auth	ASA	rASA	SS	φ	ψ	View
af-p02647-f1	1	P02647	100.0	0.0	HIS	A:179	A:179	122.0	0.626	H	-65.7	-43.6

wupsivus
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