wupsivus

Variant

Genome	Chromosome	Position	VCF ID	Ref	Alt	mRNA Change	mRNA Info
GRCh37	chr11	116706834	.	A	C	CCDS8378.1:NM_000039.1:c.494cTg>cGg_NP_000030.1:p.165L>R	Homo sapiens apolipoprotein A-I (APOA1), mRNA.

pdb_id	:
label_asym_id	:
label_seq_id	:
label_comp_id	:
auth_asym_id	:
auth_seq_id	:

alphafold_id	:
label_asym_id	:
label_seq_id	:
label_comp_id	:
auth_asym_id	:
auth_seq_id	:

PDB

Entity							Residue			Monomer					BioUnit				Ligand				View
PDB	Entity	Uniprot	Identity	Evalue	ExpMethod	Date	Name	Label	Auth	ASA	rASA	SS	φ	ψ	ASA	rASA	ΔASA	Interaction	Name	Distance	Atom(p)	Atom(l)	View
3k2s	1	P02647	100.0	4e-177	SOLUTION SCATTERING	2010-04-07	LEU	A:141	A:141	114.0	0.671	H	-54.2	-50.3	114.0	0.671	0.0		POV POV POV POV POV POV POV POV	7.216 8.532 3.588 8.609 9.582 9.249 9.939 6.823	O CG CD2 CD2 CD1 CD2 N CA	C39 C28 C25 C34 C28 C217 C213 C316
3k2s	1	P02647	100.0	4e-177	SOLUTION SCATTERING	2010-04-07	LEU	B:141	B:141	107.0	0.629	T	-67.8	-5.9	107.0	0.629	0.0		POV POV POV POV POV	5.142 3.388 9.232 7.127 5.889	O CD1 CD1 CD1 CD2	C26 C25 C28 C34 C29
1av1	1	P02647	100.0	3e-142	X-RAY	1998-02-04	LEU	A:99	A:141	73.0	0.429	T	-108.0	4.7	34.0	0.2	0.229	D:P02647:0.118 B:P02647:0.112
							LEU	B:99	B:141	107.0	0.629	H	-83.4	-42.5	25.0	0.147	0.482	A:P02647:0.247 C:P02647:0.335
							LEU	C:99	C:141	70.0	0.412	T	-108.0	4.6	33.0	0.194	0.218	D:P02647:0.1 B:P02647:0.118
							LEU	D:99	D:141	106.0	0.624	H	-83.5	-42.5	26.0	0.153	0.471	A:P02647:0.324 C:P02647:0.241
4v6m	5	P02647	100.0	3e-142	EM	2014-07-09	LEU	E:98	A0:141	105.0	0.618	H	-91.5	-22.2	93.0	0.547	0.071	F:P02647:0.071	PEV PEV PEV	5.860 7.258 8.307	N C N	C48 C22 C18
4v6m	5	P02647	100.0	3e-142	EM	2014-07-09	LEU	F:98	A1:141	123.0	0.724	T	-146.4	-7.2	123.0	0.724	0.0		PEV PGV	7.437 9.256	N C	C45 C3
6pts	1	P02647	100.0	2e-140	NMR	2020-05-13	LEU	A:98	A:298	116.0	0.682	H	-61.2	-28.0	116.0	0.682	0.0		17F	9.759	CD2	C42
6pts	1	P02647	100.0	2e-140	NMR	2020-05-13	LEU	B:98	C:496	106.0	0.624	H	-56.0	-39.3	106.0	0.624	0.0		PCW	9.216	CD1	C40
6ptw	1	P02647	100.0	2e-140	NMR	2020-05-13	LEU	A:98	A:298	125.0	0.735	H	-63.3	-30.3	125.0	0.735	0.0
6ptw	1	P02647	100.0	2e-140	NMR	2020-05-13	LEU	B:98	C:496	128.0	0.753	H	-65.4	-17.1	128.0	0.753	0.0		PCW	8.254	CD2	C40
2msc	1	P02647	100.0	4e-140	NMR	2015-06-03	LEU	A:100	A:298	109.0	0.641	H	-68.7	-27.2	109.0	0.641	0.0		PCW PCW 17F 17F	8.016 9.795 9.477 9.657	CD1 CD2 CD2 CD2	C47 C48 C42 C42
2msc	1	P02647	100.0	4e-140	NMR	2015-06-03	LEU	B:100	C:496	114.0	0.671	H	-61.9	-28.3	114.0	0.671	0.0		PCW PCW	9.974 3.866	CD2 CD1	C28 C41
2msd	1	P02647	100.0	4e-140	NMR	2015-06-03	LEU	A:100	A:298	120.0	0.706	H	-59.7	-30.7	120.0	0.706	0.0		PCW	9.481	CD2	C47
2msd	1	P02647	100.0	4e-140	NMR	2015-06-03	LEU	B:100	C:496	123.0	0.724	H	-64.2	-21.5	123.0	0.724	0.0		PCW	8.101	CD2	C40
2mse	1	P02647	100.0	4e-140	NMR	2015-06-03	LEU	A:100	A:298	127.0	0.747	H	-60.8	-22.8	127.0	0.747	0.0		17F	8.632	CD2	C42
2mse	1	P02647	100.0	4e-140	NMR	2015-06-03	LEU	B:100	C:496	116.0	0.682	H	-71.3	-19.7	116.0	0.682	0.0		PCW	7.352	CD1	C43
6cc9	1	P02647	100.0	4e-140	NMR	2018-09-05	LEU	A:100	A:298	117.0	0.688	H	-64.2	-31.4	117.0	0.688	0.0		PCW 17F	8.784 8.064	CD2 CD2	C48 C42
6cc9	1	P02647	100.0	4e-140	NMR	2018-09-05	LEU	C:100	C:496	113.0	0.665	T	-124.9	-44.2	113.0	0.665	0.0		PCW	4.439	CD1	C43
6cch	1	P02647	100.0	4e-140	NMR	2018-08-29	LEU	A:100	A:298	125.0	0.735	H	-60.8	-22.8	125.0	0.735	0.0		17F	8.716	CD2	C42
6cch	1	P02647	100.0	4e-140	NMR	2018-08-29	LEU	C:100	C:496	114.0	0.671	H	-71.3	-19.7	114.0	0.671	0.0		PCW	3.936	CD1	C43
6ccx	1	P02647	100.0	4e-140	NMR	2018-09-05	LEU	A:100	A:298	128.0	0.753	H	-66.8	-20.0	128.0	0.753	0.0
6ccx	1	P02647	100.0	4e-140	NMR	2018-09-05	LEU	C:100	C:496	128.0	0.753	H	-59.9	-29.2	128.0	0.753	0.0		PCW	5.780	CD1	C40
6w4e	1	P02647	100.0	4e-140	NMR	2020-04-15	LEU	A:100	A:298	108.0	0.635	T	-115.5	-40.7	108.0	0.635	0.0
6w4e	1	P02647	100.0	4e-140	NMR	2020-04-15	LEU	B:100	D:496	128.0	0.753	H	-67.5	-13.7	128.0	0.753	0.0		PCW	9.241	CD2	C24
6w4f	1	P02647	100.0	4e-140	NMR	2020-04-29	LEU	A:100	A:298	118.0	0.694	H	-64.7	-21.5	117.0	0.688	0.006	B:P02647:0.006	PCW	9.554	CD1	C45
6w4f	1	P02647	100.0	4e-140	NMR	2020-04-29	LEU	B:100	D:496	115.0	0.676	H	-63.4	-28.6	115.0	0.676	0.0		PCW PCW	9.125 8.321	CD2 CD2	C27 C40
7rsc	2	P02647	100.0	4e-140	NMR	2021-09-22	LEU	C:100	D:341	126.0	0.741	T	-108.6	18.1	69.0	0.406	0.335	D:P02647:0.335	7Q9 7Q9 7Q9 7Q9	9.010 9.432 8.897 4.157	O H CD1 CD1	O22 C23 C317 C316
7rsc	2	P02647	100.0	4e-140	NMR	2021-09-22	LEU	D:100	E:641	123.0	0.724	H	-90.9	-6.5	64.0	0.376	0.348	C:P02647:0.347	7Q9 17F 7Q9 7Q9 7Q9	7.678 9.960 6.078 3.222 9.697	CD2 CD2 O CD2 CD2	C317 C42 C313 C313 C314
7rse	2	P02647	100.0	4e-140	NMR	2021-09-22	LEU	C:100	D:341	107.0	0.629	H	-108.0	-20.6	67.0	0.394	0.235	D:P02647:0.235	7Q9 7Q9 7Q9 7Q9	5.504 8.881 9.280 4.741	CB CD1 CD2 CD2	C316 C318 C315 C314
7rse	2	P02647	100.0	4e-140	NMR	2021-09-22	LEU	D:100	E:641	124.0	0.729	H	-107.9	-30.9	82.0	0.482	0.247	C:P02647:0.247	7Q9 17F 7Q9 7Q9 7Q9 7Q9	5.080 8.878 7.378 7.511 3.313 4.629	CD1 CD2 CD1 CD2 CD2 CD2	C317 C40 C318 C315 C316 C317
7kjr	2	P02647	100.0	8e-133	EM	2020-11-18	LEU	C:108	NA:NA	DO	NA	DO	DO	DO	NA	NA	NA
7kjr	2	P02647	100.0	8e-133	EM	2020-11-18	LEU	D:108	NA:NA	DO	NA	DO	DO	DO	NA	NA	NA
3r2p	1	P02647	100.0	4e-132	X-RAY	2011-09-21	LEU	A:142	A:141	96.0	0.565	S	-92.3	-2.1	29.0	0.171	0.394	A:P02647:0.394
6clz	2	P02647	89.57	2e-127	NMR	2018-12-12	LEU	B:109	B:163	117.0	0.688	H	-73.8	-34.3	101.0	0.594	0.094	C:P02647:0.094	PX4 PX4 PX4 PX4 PX4 PX4 PX4 PX4 PX4 PX4	2.209 2.179 9.691 6.549 2.062 6.106 6.952 8.317 6.308 7.440	HD12 HD22 HD11 HD22 HD23 HD12 HD11 HD22 HD11 HD22	H26 H44 H33 H72 H71 H44 H45 H19 H43 H39
6clz	2	P02647	89.57	2e-127	NMR	2018-12-12	LEU	C:109	C:163	112.0	0.659	H	-72.8	-25.3	112.0	0.659	0.0		PX4 PX4 PX4 PX4 PX4 PX4 PX4 PX4 PX4	6.740 6.253 6.424 2.518 7.202 2.612 8.138 1.991 7.782	HD11 HD11 HD12 HB2 HB2 HD13 HD22 HG HD23	H37 H45 H69 H38 H42 H44 H21 H19 H20
6cm1	2	P02647	89.57	2e-127	NMR	2018-12-12	LEU	B:109	B:163	87.0	0.512	H	-78.5	-19.4	72.0	0.424	0.088	C:P02647:0.088	PX4 PX4 PX4 PX4 PX4 PX4 PX4 PX4	2.489 2.918 6.810 7.501 4.295 2.010 4.906 5.710	HD23 HD22 HD11 HD11 HD11 HD21 HD11 HD21	H25 H71 H43 H72 H70 H40 H44 H58
6cm1	2	P02647	89.57	2e-127	NMR	2018-12-12	LEU	C:109	C:163	85.0	0.5	H	-85.4	-12.9	64.0	0.376	0.124	B:P02647:0.124	PX4 PX4 PX4 PX4 PX4 PX4 PX4 PX4 PX4 PX4	7.395 2.678 2.634 3.466 6.282 4.538 9.783 2.776 7.388 8.712	HD13 HD23 HD13 HD21 HD13 HD12 HD12 HB3 HD23 HD11	H34 H45 H57 H70 H72 H23 H23 H48 H29 H31

AlphaFold DB

Entity					Residue			Monomer					View
ID	Entity	Uniprot	Identity	Evalue	Name	Label	Auth	ASA	rASA	SS	φ	ψ	View
af-p02647-f1	1	P02647	100.0	0.0	LEU	A:165	A:165	98.0	0.576	H	-81.5	-28.9

wupsivus
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