wupsivus

Variant

Genome	Chromosome	Position	VCF ID	Ref	Alt	mRNA Change	mRNA Info
GRCh37	chr11	116706850	.	C	A	CCDS8378.1:NM_000039.1:c.478Gag>Tag_NP_000030.1:p.160E>*	Homo sapiens apolipoprotein A-I (APOA1), mRNA.

pdb_id	:
label_asym_id	:
label_seq_id	:
label_comp_id	:
auth_asym_id	:
auth_seq_id	:

alphafold_id	:
label_asym_id	:
label_seq_id	:
label_comp_id	:
auth_asym_id	:
auth_seq_id	:

PDB

Entity							Residue			Monomer					BioUnit				Ligand				View
PDB	Entity	Uniprot	Identity	Evalue	ExpMethod	Date	Name	Label	Auth	ASA	rASA	SS	φ	ψ	ASA	rASA	ΔASA	Interaction	Name	Distance	Atom(p)	Atom(l)	View
3k2s	1	P02647	100.0	4e-177	SOLUTION SCATTERING	2010-04-07	GLU	A:136	A:136	85.0	0.447	H	-65.0	-21.9	28.0	0.147	0.3	B:P02647:0.3	POV POV POV POV POV CLR	7.631 8.336 3.958 4.888 8.551 9.240	OE1 CG OE2 OE1 OE1 OE1	C312 C212 C312 C310 C315 C27
3k2s	1	P02647	100.0	4e-177	SOLUTION SCATTERING	2010-04-07	GLU	B:136	B:136	72.0	0.379	G	-95.3	5.7	42.0	0.221	0.158	A:P02647:0.158	POV POV	6.784 6.585	O OE1	C311 C214
1av1	1	P02647	100.0	3e-142	X-RAY	1998-02-04	GLU	A:94	A:136	129.0	0.679	H	-46.1	-58.1	128.0	0.674	0.005	B:P02647:0.005
							GLU	B:94	B:136	117.0	0.616	H	-52.1	-35.4	97.0	0.511	0.105	A:P02647:0.105
							GLU	C:94	C:136	131.0	0.689	H	-46.2	-58.1	130.0	0.684	0.005	D:P02647:0.005
							GLU	D:94	D:136	112.0	0.589	H	-52.1	-35.4	92.0	0.484	0.105	C:P02647:0.105
4v6m	5	P02647	100.0	3e-142	EM	2014-07-09	GLU	E:93	A0:136	63.0	0.332	H	-69.5	-26.3	34.0	0.179	0.153	F:P02647:0.153	PEV PEV PGV PEV PEV	6.675 8.433 5.546 7.455 4.285	O O CB O CA	C47 C22 C34 C26 C22
4v6m	5	P02647	100.0	3e-142	EM	2014-07-09	GLU	F:93	A1:136	80.0	0.421	T	-47.6	-39.8	49.0	0.258	0.163	CA:Q0TCG1:0.158 E:P02647:0.005	PGV PEV	8.499 3.701	OE2 O	C18 C44
6pts	1	P02647	100.0	2e-140	NMR	2020-05-13	GLU	A:93	A:293	88.0	0.463	H	-59.9	-40.6	64.0	0.337	0.126	B:P02647:0.126
6pts	1	P02647	100.0	2e-140	NMR	2020-05-13	GLU	B:93	C:491	100.0	0.526	H	-62.0	-38.8	21.0	0.111	0.415	A:P02647:0.416
6ptw	1	P02647	100.0	2e-140	NMR	2020-05-13	GLU	A:93	A:293	90.0	0.474	H	-59.6	-37.5	62.0	0.326	0.148	B:P02647:0.147
6ptw	1	P02647	100.0	2e-140	NMR	2020-05-13	GLU	B:93	C:491	90.0	0.474	H	-59.4	-42.4	17.0	0.089	0.385	A:P02647:0.384
2msc	1	P02647	100.0	4e-140	NMR	2015-06-03	GLU	A:95	A:293	119.0	0.626	H	-64.3	-39.2	84.0	0.442	0.184	B:P02647:0.184
2msc	1	P02647	100.0	4e-140	NMR	2015-06-03	GLU	B:95	C:491	84.0	0.442	H	-56.7	-48.1	8.0	0.042	0.4	A:P02647:0.4	PCW	8.990	C	C41
2msd	1	P02647	100.0	4e-140	NMR	2015-06-03	GLU	A:95	A:293	94.0	0.495	H	-62.9	-36.6	65.0	0.342	0.153	B:P02647:0.153
2msd	1	P02647	100.0	4e-140	NMR	2015-06-03	GLU	B:95	C:491	78.0	0.411	H	-59.2	-45.1	10.0	0.053	0.358	A:P02647:0.358
2mse	1	P02647	100.0	4e-140	NMR	2015-06-03	GLU	A:95	A:293	95.0	0.5	H	-63.0	-35.3	72.0	0.379	0.121	B:P02647:0.121
2mse	1	P02647	100.0	4e-140	NMR	2015-06-03	GLU	B:95	C:491	91.0	0.479	H	-59.7	-53.2	14.0	0.074	0.405	A:P02647:0.405	PCW	4.700	OE2	C28
6cc9	1	P02647	100.0	4e-140	NMR	2018-09-05	GLU	A:95	A:293	89.0	0.468	H	-62.9	-39.3	59.0	0.311	0.157	C:P02647:0.158
6cc9	1	P02647	100.0	4e-140	NMR	2018-09-05	GLU	C:95	C:491	94.0	0.495	H	-60.9	-53.7	13.0	0.068	0.427	A:P02647:0.426	PCW	8.964	OE2	C28
6cch	1	P02647	100.0	4e-140	NMR	2018-08-29	GLU	A:95	A:293	95.0	0.5	H	-63.0	-35.2	71.0	0.374	0.126	C:P02647:0.126
6cch	1	P02647	100.0	4e-140	NMR	2018-08-29	GLU	C:95	C:491	90.0	0.474	H	-59.6	-53.2	13.0	0.068	0.406	A:P02647:0.405	PCW	8.126	OE2	C28
6ccx	1	P02647	100.0	4e-140	NMR	2018-09-05	GLU	A:95	A:293	82.0	0.432	H	-62.6	-42.3	55.0	0.289	0.143	C:P02647:0.142
6ccx	1	P02647	100.0	4e-140	NMR	2018-09-05	GLU	C:95	C:491	87.0	0.458	H	-60.1	-45.3	14.0	0.074	0.384	A:P02647:0.384	PCW	7.762	OE1	C27
6w4e	1	P02647	100.0	4e-140	NMR	2020-04-15	GLU	A:95	A:293	108.0	0.568	H	-61.9	-40.3	82.0	0.432	0.136	B:P02647:0.137
6w4e	1	P02647	100.0	4e-140	NMR	2020-04-15	GLU	B:95	D:491	98.0	0.516	H	-59.6	-41.0	20.0	0.105	0.411	A:P02647:0.411
6w4f	1	P02647	100.0	4e-140	NMR	2020-04-29	GLU	A:95	A:293	98.0	0.516	H	-65.6	-38.7	71.0	0.374	0.142	B:P02647:0.142
6w4f	1	P02647	100.0	4e-140	NMR	2020-04-29	GLU	B:95	D:491	103.0	0.542	H	-57.0	-49.0	24.0	0.126	0.416	A:P02647:0.416
7rsc	2	P02647	100.0	4e-140	NMR	2021-09-22	GLU	C:95	D:336	151.0	0.795	H	-90.3	-36.5	142.0	0.747	0.048	D:P02647:0.047	7Q9 7Q9	6.485 9.551	H H	C310 C318
7rsc	2	P02647	100.0	4e-140	NMR	2021-09-22	GLU	D:95	E:636	77.0	0.405	H	-58.6	-47.2	77.0	0.405	0.0		7Q9 7Q9 7Q9	9.280 8.391 6.807	O N H	C312 C32 C317
7rse	2	P02647	100.0	4e-140	NMR	2021-09-22	GLU	C:95	D:336	136.0	0.716	H	-83.6	-39.3	128.0	0.674	0.042	D:P02647:0.042	7Q9 7Q9	6.583 9.451	H H	C310 C318
7rse	2	P02647	100.0	4e-140	NMR	2021-09-22	GLU	D:95	E:636	73.0	0.384	H	-59.1	-50.3	70.0	0.368	0.016	C:P02647:0.016	17F 7Q9 7Q9 7Q9	9.471 9.489 5.806 6.766	H O C H	C42 C313 C312 C317
7kjr	2	P02647	100.0	8e-133	EM	2020-11-18	GLU	C:103	NA:NA	DO	NA	DO	DO	DO	NA	NA	NA
7kjr	2	P02647	100.0	8e-133	EM	2020-11-18	GLU	D:103	NA:NA	DO	NA	DO	DO	DO	NA	NA	NA
3r2p	1	P02647	100.0	4e-132	X-RAY	2011-09-21	GLU	A:137	A:136	81.0	0.426	T	-85.5	1.3	81.0	0.426	0.0
6clz	2	P02647	89.57	2e-127	NMR	2018-12-12	GLU	B:104	B:158	74.0	0.389	H	-61.5	-35.4	74.0	0.389	0.0		PX4 PX4 PX4 PX4 PX4 PX4 PX4	7.726 9.905 8.626 9.948 9.889 6.173 3.673	C H H N HB2 HB2 HB3	H21 H43 H46 H43 H35 H44 H45
6clz	2	P02647	89.57	2e-127	NMR	2018-12-12	GLU	C:104	C:158	98.0	0.516	H	-59.2	-47.6	98.0	0.516	0.0		PX4 PX4 PX4 PX4 PX4	9.721 5.816 7.093 7.761 9.961	HG2 O HB3 HB3 O	H40 H38 H29 H35 H19
6cm1	2	P02647	89.57	2e-127	NMR	2018-12-12	GLU	B:104	B:158	110.0	0.579	H	-53.2	-38.6	74.0	0.389	0.19	C:P02647:0.189	PX4 PX4 PX4 PX4 PX4 PX4	9.023 6.398 8.980 9.030 8.710 9.455	O HB2 H C O C	H1 H35 H71 H71 H35 H44
6cm1	2	P02647	89.57	2e-127	NMR	2018-12-12	GLU	C:104	C:158	112.0	0.589	H	-56.7	-43.5	78.0	0.411	0.178	B:P02647:0.179	PX4 PX4 PX4	5.784 8.214 5.160	HB2 C N	H40 H59 H8

AlphaFold DB

Entity					Residue			Monomer					View
ID	Entity	Uniprot	Identity	Evalue	Name	Label	Auth	ASA	rASA	SS	φ	ψ	View
af-p02647-f1	1	P02647	100.0	0.0	GLU	A:160	A:160	78.0	0.411	H	-58.9	-40.4

wupsivus
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