wupsivus

Variant

Genome	Chromosome	Position	VCF ID	Ref	Alt	mRNA Change	mRNA Info
GRCh37	chr11	116707042	.	A	C	CCDS8378.1:NM_000039.1:c.286Tgg>Ggg_NP_000030.1:p.96W>G	Homo sapiens apolipoprotein A-I (APOA1), mRNA.

pdb_id	:
label_asym_id	:
label_seq_id	:
label_comp_id	:
auth_asym_id	:
auth_seq_id	:

alphafold_id	:
label_asym_id	:
label_seq_id	:
label_comp_id	:
auth_asym_id	:
auth_seq_id	:

PDB

Entity							Residue			Monomer					BioUnit				Ligand				View
PDB	Entity	Uniprot	Identity	Evalue	ExpMethod	Date	Name	Label	Auth	ASA	rASA	SS	φ	ψ	ASA	rASA	ΔASA	Interaction	Name	Distance	Atom(p)	Atom(l)	View
3k2s	1	P02647	100.0	4e-177	SOLUTION SCATTERING	2010-04-07	TRP	A:72	A:72	221.0	0.867	T	-125.6	-70.2	221.0	0.867	0.0		POV POV POV POV CLR	3.397 6.866 3.256 3.263 5.259	CH2 CZ3 CZ2 O CH2	C310 C24 O32 C27 C12
3k2s	1	P02647	100.0	4e-177	SOLUTION SCATTERING	2010-04-07	TRP	B:72	B:72	206.0	0.808	T	-70.7	27.0	206.0	0.808	0.0		POV POV POV POV POV POV POV POV CLR	8.049 7.895 8.836 4.942 4.225 3.179 4.078 3.453 9.673	CZ3 CH2 CD1 CH2 NE1 NE1 CE3 CZ3 CZ2	C217 C213 C15 C314 O22 C23 C310 C212 C15
1av1	1	P02647	100.0	3e-142	X-RAY	1998-02-04	TRP	A:30	A:72	172.0	0.675	H	-40.7	-59.2	72.0	0.282	0.393	D:P02647:0.392 C:P02647:0.012
							TRP	B:30	B:72	174.0	0.682	I	-55.8	-34.0	94.0	0.369	0.313	C:P02647:0.314
							TRP	C:30	C:72	172.0	0.675	H	-40.7	-59.2	74.0	0.29	0.385	A:P02647:0.012 B:P02647:0.384
							TRP	D:30	D:72	171.0	0.671	I	-55.8	-34.0	91.0	0.357	0.314	A:P02647:0.314
4v6m	5	P02647	100.0	3e-142	EM	2014-07-09	TRP	E:29	A0:72	134.0	0.525	H	-69.7	-39.1	134.0	0.525	0.0		PEV PEV PEV PEV PEV PEV PGV PGV PEV	3.368 7.735 8.910 9.182 8.701 8.907 9.021 8.038 8.564	NE1 CZ2 CZ2 CZ3 CH2 CZ3 CZ3 CH2 CH2	O11 N6 C15 C48 C48 C46 C11 C18 C39
4v6m	5	P02647	100.0	3e-142	EM	2014-07-09	TRP	F:29	A1:72	124.0	0.486	T	-94.8	-12.9	124.0	0.486	0.0		PEV PGV PEV PGV PEV PEV	7.648 3.397 7.634 5.552 4.723 4.173	CH2 CH2 CH2 CZ3 CZ3 CH2	C39 O13 C13 C21 C32 C34
6pts	1	P02647	100.0	2e-140	NMR	2020-05-13	TRP	A:29	A:229	163.0	0.639	H	-66.5	-32.2	163.0	0.639	0.0		PCW PCW	7.226 8.624	CH2 CZ2	C45 O31
6pts	1	P02647	100.0	2e-140	NMR	2020-05-13	TRP	B:29	C:427	169.0	0.663	H	-64.2	-46.7	169.0	0.663	0.0
6ptw	1	P02647	100.0	2e-140	NMR	2020-05-13	TRP	A:29	A:229	159.0	0.624	H	-65.6	-31.7	159.0	0.624	0.0		PCW	3.393	CH2	C47
6ptw	1	P02647	100.0	2e-140	NMR	2020-05-13	TRP	B:29	C:427	174.0	0.682	H	-69.5	-36.8	174.0	0.682	0.0
2msc	1	P02647	100.0	4e-140	NMR	2015-06-03	TRP	A:31	A:229	161.0	0.631	H	-65.6	-43.6	161.0	0.631	0.0		PCW PCW	3.771 8.564	CZ3 CH2	C48 C26
2msc	1	P02647	100.0	4e-140	NMR	2015-06-03	TRP	B:31	C:427	155.0	0.608	H	-67.4	-42.6	155.0	0.608	0.0
2msd	1	P02647	100.0	4e-140	NMR	2015-06-03	TRP	A:31	A:229	156.0	0.612	H	-66.0	-39.6	156.0	0.612	0.0		PCW	4.927	CZ3	C48
2msd	1	P02647	100.0	4e-140	NMR	2015-06-03	TRP	B:31	C:427	183.0	0.718	H	-68.9	-37.5	183.0	0.718	0.0
2mse	1	P02647	100.0	4e-140	NMR	2015-06-03	TRP	A:31	A:229	151.0	0.592	H	-65.8	-38.9	138.0	0.541	0.051	C:P01116:0.051
2mse	1	P02647	100.0	4e-140	NMR	2015-06-03	TRP	B:31	C:427	156.0	0.612	H	-67.0	-38.2	156.0	0.612	0.0
6cc9	1	P02647	100.0	4e-140	NMR	2018-09-05	TRP	A:31	A:229	180.0	0.706	H	-59.5	-42.3	180.0	0.706	0.0		PCW PCW	9.738 8.573	CZ3 CH2	C48 C34
6cc9	1	P02647	100.0	4e-140	NMR	2018-09-05	TRP	C:31	C:427	168.0	0.659	H	-64.9	-37.5	168.0	0.659	0.0
6cch	1	P02647	100.0	4e-140	NMR	2018-08-29	TRP	A:31	A:229	145.0	0.569	H	-65.8	-38.9	145.0	0.569	0.0		PCW PCW	8.414 9.791	CH2 CH2	C48 C42
6cch	1	P02647	100.0	4e-140	NMR	2018-08-29	TRP	C:31	C:427	155.0	0.608	H	-66.9	-38.2	155.0	0.608	0.0
6ccx	1	P02647	100.0	4e-140	NMR	2018-09-05	TRP	A:31	A:229	156.0	0.612	H	-68.0	-35.7	156.0	0.612	0.0		PCW	9.464	CH2	C41
6ccx	1	P02647	100.0	4e-140	NMR	2018-09-05	TRP	C:31	C:427	172.0	0.675	H	-67.2	-39.9	172.0	0.675	0.0
6w4e	1	P02647	100.0	4e-140	NMR	2020-04-15	TRP	A:31	A:229	160.0	0.627	H	-68.1	-35.9	160.0	0.627	0.0		PCW	6.715	CZ3	C43
6w4e	1	P02647	100.0	4e-140	NMR	2020-04-15	TRP	B:31	D:427	183.0	0.718	H	-65.0	-38.3	183.0	0.718	0.0
6w4f	1	P02647	100.0	4e-140	NMR	2020-04-29	TRP	A:31	A:229	161.0	0.631	H	-62.9	-40.7	161.0	0.631	0.0		PCW	5.236	CH2	C47
6w4f	1	P02647	100.0	4e-140	NMR	2020-04-29	TRP	B:31	D:427	153.0	0.6	H	-70.3	-38.0	153.0	0.6	0.0
7rsc	2	P02647	100.0	4e-140	NMR	2021-09-22	TRP	C:31	D:272	154.0	0.604	H	-62.3	-41.7	61.0	0.239	0.365	D:P02647:0.365	17F 7Q9	3.809 8.996	CE3 CZ3	C39 C318
7rsc	2	P02647	100.0	4e-140	NMR	2021-09-22	TRP	D:31	E:572	150.0	0.588	H	-68.3	-37.3	47.0	0.184	0.404	C:P02647:0.404	7Q9 7Q9 7Q9 7Q9 7Q9	6.443 5.146 5.183 9.937 6.618	HE1 HE1 CD1 HE1 HE1	C310 C317 C312 C318 C316
7rse	2	P02647	100.0	4e-140	NMR	2021-09-22	TRP	C:31	D:272	174.0	0.682	H	-65.3	-32.9	80.0	0.314	0.368	D:P02647:0.369	17F 7Q9 7Q9 7Q9	3.572 3.870 5.866 8.888	CZ3 CZ3 CD2 CH2	C42 C318 C316 C318
7rse	2	P02647	100.0	4e-140	NMR	2021-09-22	TRP	D:31	E:572	152.0	0.596	H	-64.8	-41.7	52.0	0.204	0.392	C:P02647:0.392	7Q9 7Q9 7Q9 7Q9 7Q9	8.407 7.950 5.046 5.462 4.987	HE1 CE2 CZ2 HE1 HE1	C317 C310 C314 C318 C316
7kjr	2	P02647	100.0	8e-133	EM	2020-11-18	TRP	C:39	C:40	144.0	0.565	H	-70.6	-35.3	16.0	0.063	0.502	A:P0DTC3:0.502	PEE HOH	2.932 3.914	NE1 CB	O4 O
7kjr	2	P02647	100.0	8e-133	EM	2020-11-18	TRP	D:39	D:40	142.0	0.557	H	-71.0	-34.2	17.0	0.067	0.49	B:P0DTC3:0.49	PEE HOH	2.936 3.932	NE1 CB	O4 O
3r2p	1	P02647	100.0	4e-132	X-RAY	2011-09-21	TRP	A:73	A:72	22.0	0.086	H	-63.4	-33.9	22.0	0.086	0.0		HOH	7.320	CZ2	O
6clz	2	P02647	89.57	2e-127	NMR	2018-12-12	TRP	B:18	B:72	146.0	0.573	H	-66.1	-44.8	146.0	0.573	0.0		PX4 PX4 PX4 PX4 PX4 PX4 PX4 PX4	2.634 2.382 9.211 6.162 7.114 6.243 7.723 6.463	HZ2 HE3 HB3 HZ2 HZ2 HE1 HD1 HD1	H15 H15 H5 H10 H17 H19 H70 H43
6clz	2	P02647	89.57	2e-127	NMR	2018-12-12	TRP	C:18	C:72	130.0	0.51	H	-70.8	-41.8	130.0	0.51	0.0		PX4 PX4 PX4 PX4 PX4 PX4 PX4	5.573 3.144 7.637 2.451 2.810 2.403 8.791	HD1 HE1 HE1 HH2 HB2 HE1 HZ2	H72 H44 H70 H10 H48 H47 O8
6cm1	2	P02647	89.57	2e-127	NMR	2018-12-12	TRP	B:18	B:72	143.0	0.561	H	-68.1	-46.1	135.0	0.529	0.032	C:P02647:0.031	PX4 PX4 PX4 PX4 PX4 PX4 PX4 PX4	2.274 4.230 7.177 4.652 7.456 2.084 9.221 7.468	HZ3 CE3 HH2 HZ2 HZ2 HH2 HZ3 HZ3	H60 H5 H68 H10 H13 H21 H70 H36
6cm1	2	P02647	89.57	2e-127	NMR	2018-12-12	TRP	C:18	C:72	156.0	0.612	H	-67.7	-41.9	156.0	0.612	0.0		PX4 PX4 PX4 PX4 PX4 PX4 PX4	7.665 8.399 6.967 4.217 8.802 2.484 1.876	HA HH2 HH2 HE1 HD1 HB2 HE1	H69 H21 H18 H22 H69 H50 O6
2n5e	1	P02647	88.36	1e-112	NMR	2016-12-21	TRP	A:18	A:72	153.0	0.6	H	-69.7	-32.6	127.0	0.498	0.102	B:P02647:0.102
2n5e	1	P02647	88.36	1e-112	NMR	2016-12-21	TRP	B:18	B:72	155.0	0.608	H	-69.7	-32.6	129.0	0.506	0.102	A:P02647:0.102

AlphaFold DB

Entity					Residue			Monomer					View
ID	Entity	Uniprot	Identity	Evalue	Name	Label	Auth	ASA	rASA	SS	φ	ψ	View
af-p02647-f1	1	P02647	100.0	0.0	TRP	A:96	A:96	83.0	0.325	H	-67.5	-38.9

wupsivus
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