wupsivus

Variant

Genome	Chromosome	Position	VCF ID	Ref	Alt	mRNA Change	mRNA Info
GRCh37	chr11	116707044	.	A	C	CCDS8378.1:NM_000039.1:c.284tTc>tGc_NP_000030.1:p.95F>C	Homo sapiens apolipoprotein A-I (APOA1), mRNA.

pdb_id	:
label_asym_id	:
label_seq_id	:
label_comp_id	:
auth_asym_id	:
auth_seq_id	:

alphafold_id	:
label_asym_id	:
label_seq_id	:
label_comp_id	:
auth_asym_id	:
auth_seq_id	:

PDB

Entity							Residue			Monomer					BioUnit				Ligand				View
PDB	Entity	Uniprot	Identity	Evalue	ExpMethod	Date	Name	Label	Auth	ASA	rASA	SS	φ	ψ	ASA	rASA	ΔASA	Interaction	Name	Distance	Atom(p)	Atom(l)	View
3k2s	1	P02647	100.0	4e-177	SOLUTION SCATTERING	2010-04-07	PHE	A:71	A:71	146.0	0.695	T	-79.3	47.2	78.0	0.371	0.324	B:P02647:0.324	POV POV POV POV POV POV	3.904 7.405 7.290 6.964 3.152 7.262	CZ CE2 O O O CZ	C218 C217 C28 C36 C37 C217
3k2s	1	P02647	100.0	4e-177	SOLUTION SCATTERING	2010-04-07	PHE	B:71	B:71	56.0	0.267		-142.4	-38.9	56.0	0.267	0.0		POV POV POV POV POV POV	7.194 8.393 7.274 3.660 3.806 3.622	CE2 CZ CE1 CE1 CE2 CE2	C211 C314 O22 C25 C315 C210
1av1	1	P02647	100.0	3e-142	X-RAY	1998-02-04	PHE	A:29	A:71	139.0	0.662	T	-84.1	-81.9	12.0	0.057	0.605	D:P02647:0.086 C:P02647:0.19 B:P02647:0.443
							PHE	B:29	B:71	141.0	0.671	I	-71.0	-79.8	16.0	0.076	0.595	D:P02647:0.205 A:P02647:0.4 C:P02647:0.1
							PHE	C:29	C:71	138.0	0.657	T	-84.1	-81.8	11.0	0.052	0.605	D:P02647:0.443 A:P02647:0.19 B:P02647:0.081
							PHE	D:29	D:71	142.0	0.676	I	-71.0	-79.8	13.0	0.062	0.614	A:P02647:0.105 C:P02647:0.41 B:P02647:0.214
4v6m	5	P02647	100.0	3e-142	EM	2014-07-09	PHE	E:28	A0:71	145.0	0.69	H	-75.7	-34.2	145.0	0.69	0.0		PEV PEV	8.503 9.448	C N	O11 C48
4v6m	5	P02647	100.0	3e-142	EM	2014-07-09	PHE	F:28	A1:71	142.0	0.676	T	-164.1	-4.2	142.0	0.676	0.0		PGV PGV PEV	8.626 8.429 8.516	O N N	O05 C20 C48
6pts	1	P02647	100.0	2e-140	NMR	2020-05-13	PHE	A:28	A:228	120.0	0.571	H	-63.3	-44.8	54.0	0.257	0.314	B:P02647:0.314	PCW	6.588	CE1	C46
6pts	1	P02647	100.0	2e-140	NMR	2020-05-13	PHE	B:28	C:426	112.0	0.533	H	-67.7	-34.9	83.0	0.395	0.138	A:P02647:0.138	PCW	8.443	CZ	C28
6ptw	1	P02647	100.0	2e-140	NMR	2020-05-13	PHE	A:28	A:228	129.0	0.614	H	-60.6	-47.1	65.0	0.31	0.304	B:P02647:0.305	PCW PCW	5.609 9.921	CD1 CZ	C48 C28
6ptw	1	P02647	100.0	2e-140	NMR	2020-05-13	PHE	B:28	C:426	104.0	0.495	H	-68.9	-33.5	74.0	0.352	0.143	A:P02647:0.143	PCW	9.846	CE1	C28
2msc	1	P02647	100.0	4e-140	NMR	2015-06-03	PHE	A:30	A:228	132.0	0.629	H	-63.6	-40.5	72.0	0.343	0.286	B:P02647:0.286	PCW PCW PCW	5.031 6.909 7.947	CD2 CE2 CE2	C47 C28 C48
2msc	1	P02647	100.0	4e-140	NMR	2015-06-03	PHE	B:30	C:426	121.0	0.576	H	-62.9	-39.9	70.0	0.333	0.243	A:P02647:0.243	PCW PCW	4.581 9.617	CE2 CZ	C28 C46
2msd	1	P02647	100.0	4e-140	NMR	2015-06-03	PHE	A:30	A:228	129.0	0.614	H	-65.0	-42.4	51.0	0.243	0.371	B:P02647:0.371	PCW PCW	6.215 9.055	CD1 CE1	C48 C48
2msd	1	P02647	100.0	4e-140	NMR	2015-06-03	PHE	B:30	C:426	111.0	0.529	H	-64.9	-38.3	75.0	0.357	0.172	A:P02647:0.171	PCW	8.070	CE1	C28
2mse	1	P02647	100.0	4e-140	NMR	2015-06-03	PHE	A:30	A:228	129.0	0.614	H	-63.9	-45.8	79.0	0.376	0.238	B:P02647:0.238	PCW	8.885	CZ	C47
2mse	1	P02647	100.0	4e-140	NMR	2015-06-03	PHE	B:30	C:426	127.0	0.605	H	-61.4	-38.9	75.0	0.357	0.248	A:P02647:0.248	PCW PCW PCW	3.772 7.462 9.825	CZ CZ CE2	C24 C26 C28
6cc9	1	P02647	100.0	4e-140	NMR	2018-09-05	PHE	A:30	A:228	131.0	0.624	H	-63.8	-48.5	114.0	0.543	0.081	C:P02647:0.081	PCW PCW	4.264 9.886	CE2 CE2	C44 C27
6cc9	1	P02647	100.0	4e-140	NMR	2018-09-05	PHE	C:30	C:426	116.0	0.552	H	-66.4	-46.9	90.0	0.429	0.123	A:P02647:0.124	PCW PCW	7.123 8.960	CD1 CZ	C28 C23
6cch	1	P02647	100.0	4e-140	NMR	2018-08-29	PHE	A:30	A:228	130.0	0.619	H	-63.9	-45.8	79.0	0.376	0.243	C:P02647:0.243	PCW PCW	8.160 9.498	CZ CE1	C44 C48
6cch	1	P02647	100.0	4e-140	NMR	2018-08-29	PHE	C:30	C:426	133.0	0.633	H	-61.4	-38.9	78.0	0.371	0.262	A:P02647:0.262
6ccx	1	P02647	100.0	4e-140	NMR	2018-09-05	PHE	A:30	A:228	134.0	0.638	H	-61.7	-49.5	84.0	0.4	0.238	C:P02647:0.238	PCW	8.302	CZ	C44
6ccx	1	P02647	100.0	4e-140	NMR	2018-09-05	PHE	C:30	C:426	105.0	0.5	H	-62.6	-34.3	78.0	0.371	0.129	A:P02647:0.129	PCW	9.347	CE1	C28
6w4e	1	P02647	100.0	4e-140	NMR	2020-04-15	PHE	A:30	A:228	130.0	0.619	H	-58.7	-47.7	73.0	0.348	0.271	B:P02647:0.271	PCW PCW	6.020 8.849	CE1 CZ	C44 C28
6w4e	1	P02647	100.0	4e-140	NMR	2020-04-15	PHE	B:30	D:426	109.0	0.519	H	-62.6	-44.6	100.0	0.476	0.043	A:P02647:0.043
6w4f	1	P02647	100.0	4e-140	NMR	2020-04-29	PHE	A:30	A:228	127.0	0.605	H	-60.7	-51.5	67.0	0.319	0.286	B:P02647:0.286	PCW	5.863	CD1	C48
6w4f	1	P02647	100.0	4e-140	NMR	2020-04-29	PHE	B:30	D:426	115.0	0.548	H	-67.1	-37.0	89.0	0.424	0.124	A:P02647:0.124	PCW PCW	9.467 7.048	CE1 CZ	C17 C28
7rsc	2	P02647	100.0	4e-140	NMR	2021-09-22	PHE	C:30	D:271	122.0	0.581	H	-67.4	-41.5	84.0	0.4	0.181	D:P02647:0.181	17F	6.441	N	C1Z
7rsc	2	P02647	100.0	4e-140	NMR	2021-09-22	PHE	D:30	E:571	139.0	0.662	H	-62.5	-51.4	93.0	0.443	0.219	C:P02647:0.219	7Q9 7Q9	8.641 9.782	H H	C318 C313
7rse	2	P02647	100.0	4e-140	NMR	2021-09-22	PHE	C:30	D:271	113.0	0.538	H	-63.3	-53.0	65.0	0.31	0.228	D:P02647:0.229	17F 7Q9 7Q9	6.101 7.826 9.375	N H CE1	C1Z C318 C316
7rse	2	P02647	100.0	4e-140	NMR	2021-09-22	PHE	D:30	E:571	135.0	0.643	H	-63.5	-50.7	87.0	0.414	0.229	C:P02647:0.229
7kjr	2	P02647	100.0	8e-133	EM	2020-11-18	PHE	C:38	C:39	110.0	0.524	H	-63.7	-45.5	110.0	0.524	0.0		PEE HOH	4.114 7.443	CD2 C	C12 O
7kjr	2	P02647	100.0	8e-133	EM	2020-11-18	PHE	D:38	D:39	106.0	0.505	H	-63.6	-45.1	106.0	0.505	0.0		PEE HOH	4.110 7.473	CD2 C	C12 O
3r2p	1	P02647	100.0	4e-132	X-RAY	2011-09-21	PHE	A:72	A:71	64.0	0.305	H	-57.5	-53.4	3.0	0.014	0.291	A:P02647:0.29	HOH	9.075	CE2	O
6clz	2	P02647	89.57	2e-127	NMR	2018-12-12	PHE	B:17	B:71	128.0	0.61	H	-50.5	-44.4	57.0	0.271	0.339	C:P02647:0.338	PX4 PX4 PX4 PX4 PX4 PX4 PX4 PX4 PX4	2.255 5.780 9.638 9.434 7.515 7.946 6.276 2.357 8.706	HB2 HD1 H HE1 HE1 HZ HZ HZ HZ	H72 H19 H11 H58 H31 H19 H69 H45 H45
6clz	2	P02647	89.57	2e-127	NMR	2018-12-12	PHE	C:17	C:71	131.0	0.624	H	-59.4	-46.7	51.0	0.243	0.381	B:P02647:0.381	PX4 PX4 PX4 PX4 PX4	5.595 2.049 7.770 4.081 6.840	HE2 HZ HZ HE2 HE2	H72 H72 H71 H52 H49
6cm1	2	P02647	89.57	2e-127	NMR	2018-12-12	PHE	B:17	B:71	144.0	0.686	H	-63.5	-42.3	35.0	0.167	0.519	C:P02647:0.519	PX4 PX4 PX4 PX4 PX4 PX4 PX4	6.668 7.853 7.844 9.704 7.436 8.444 8.942	HB3 HB2 O HB3 HE1 HB3 HE1	H61 H13 H68 H19 H42 H31 H43
6cm1	2	P02647	89.57	2e-127	NMR	2018-12-12	PHE	C:17	C:71	132.0	0.629	H	-71.7	-39.1	40.0	0.19	0.439	B:P02647:0.438	PX4 PX4 PX4 PX4 PX4 PX4 PX4 PX4 PX4	7.497 8.976 5.471 9.462 5.149 7.499 7.598 2.578 7.054	HZ HE1 HE1 HE2 HE2 HZ HE1 HE2 HE2	H59 H42 H69 H39 H28 H28 H68 H54 H20
2n5e	1	P02647	88.36	1e-112	NMR	2016-12-21	PHE	A:17	A:71	150.0	0.714	H	-61.7	-61.7	150.0	0.714	0.0
2n5e	1	P02647	88.36	1e-112	NMR	2016-12-21	PHE	B:17	B:71	151.0	0.719	H	-61.5	-61.8	151.0	0.719	0.0

AlphaFold DB

Entity					Residue			Monomer					View
ID	Entity	Uniprot	Identity	Evalue	Name	Label	Auth	ASA	rASA	SS	φ	ψ	View
af-p02647-f1	1	P02647	100.0	0.0	PHE	A:95	A:95	123.0	0.586	H	-66.6	-45.2

wupsivus
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