wupsivus

Variant

Genome	Chromosome	Position	VCF ID	Ref	Alt	mRNA Change	mRNA Info
GRCh37	chr11	116707077	.	A	C	CCDS8378.1:NM_000039.1:c.251cTg>cGg_NP_000030.1:p.84L>R	Homo sapiens apolipoprotein A-I (APOA1), mRNA.

pdb_id	:
label_asym_id	:
label_seq_id	:
label_comp_id	:
auth_asym_id	:
auth_seq_id	:

alphafold_id	:
label_asym_id	:
label_seq_id	:
label_comp_id	:
auth_asym_id	:
auth_seq_id	:

PDB

Entity							Residue			Monomer					BioUnit				Ligand				View
PDB	Entity	Uniprot	Identity	Evalue	ExpMethod	Date	Name	Label	Auth	ASA	rASA	SS	φ	ψ	ASA	rASA	ΔASA	Interaction	Name	Distance	Atom(p)	Atom(l)	View
3k2s	1	P02647	100.0	4e-177	SOLUTION SCATTERING	2010-04-07	LEU	A:60	A:60	101.0	0.594	H	-108.3	-52.9	85.0	0.5	0.094	B:P02647:0.094	POV POV POV POV POV POV	8.877 3.997 7.749 6.228 3.898 7.970	CD1 CD2 CD1 O CD1 CD1	C218 C29 C39 C34 C38 C218
3k2s	1	P02647	100.0	4e-177	SOLUTION SCATTERING	2010-04-07	LEU	B:60	B:60	80.0	0.471	H	-61.3	-62.1	80.0	0.471	0.0		POV POV POV POV POV POV	7.181 3.730 6.013 9.510 4.371 6.710	CD1 CD1 CD1 CD1 CD2 CD1	C311 C316 C213 C316 C38 C310
1av1	1	P02647	100.0	3e-142	X-RAY	1998-02-04	LEU	A:18	A:60	128.0	0.753	H	-53.7	-35.9	7.0	0.041	0.712	D:P02647:0.159 C:P02647:0.265 B:P02647:0.394
							LEU	B:18	B:60	108.0	0.635	H	-50.8	-31.4	25.0	0.147	0.488	D:P02647:0.088 A:P02647:0.418
							LEU	C:18	C:60	128.0	0.753	H	-53.7	-35.9	8.0	0.047	0.706	D:P02647:0.406 A:P02647:0.253 B:P02647:0.147
							LEU	D:18	D:60	108.0	0.635	H	-50.8	-31.4	24.0	0.141	0.494	C:P02647:0.429 B:P02647:0.082
4v6m	5	P02647	100.0	3e-142	EM	2014-07-09	LEU	E:17	A0:60	115.0	0.676	H	-51.3	-47.1	115.0	0.676	0.0
4v6m	5	P02647	100.0	3e-142	EM	2014-07-09	LEU	F:17	A1:60	125.0	0.735	H	-68.9	-41.0	125.0	0.735	0.0		PEV PEV PGV	8.588 9.803 7.726	N C O	C41 O4P O06
6pts	1	P02647	100.0	2e-140	NMR	2020-05-13	LEU	A:17	A:217	92.0	0.541	H	-61.6	-37.2	62.0	0.365	0.176	B:P02647:0.176	PCW PCW	7.579 4.117	CD1 CD1	C16 C28
6pts	1	P02647	100.0	2e-140	NMR	2020-05-13	LEU	B:17	C:415	78.0	0.459	H	-63.3	-42.2	66.0	0.388	0.071	A:P02647:0.071	PCW PCW	9.283 8.019	CD1 CD1	C48 C28
6ptw	1	P02647	100.0	2e-140	NMR	2020-05-13	LEU	A:17	A:217	100.0	0.588	H	-68.0	-35.8	78.0	0.459	0.129	B:P02647:0.129	PCW PCW PCW	3.534 4.667 9.356	CD2 CD1 CD2	C25 C28 C28
6ptw	1	P02647	100.0	2e-140	NMR	2020-05-13	LEU	B:17	C:415	81.0	0.476	H	-64.4	-41.9	65.0	0.382	0.094	A:P02647:0.094	PCW PCW PCW	9.362 8.204 5.550	CD2 CD1 CD1	C24 C48 C28
2msc	1	P02647	100.0	4e-140	NMR	2015-06-03	LEU	A:19	A:217	75.0	0.441	H	-68.3	-39.3	52.0	0.306	0.135	B:P02647:0.135	PCW PCW	3.814 8.568	CD2 CD2	C22 C28
2msc	1	P02647	100.0	4e-140	NMR	2015-06-03	LEU	B:19	C:415	80.0	0.471	H	-72.0	-41.5	74.0	0.435	0.036	A:P02647:0.035	PCW PCW PCW PCW	5.208 8.344 8.299 8.483	CD2 CD1 CD1 CD1	C25 C28 C47 C24
2msd	1	P02647	100.0	4e-140	NMR	2015-06-03	LEU	A:19	A:217	89.0	0.524	H	-67.0	-43.4	63.0	0.371	0.153	B:P02647:0.153	PCW PCW PCW	3.899 4.856 9.031	CD1 CD1 CD2	C23 C28 C28
2msd	1	P02647	100.0	4e-140	NMR	2015-06-03	LEU	B:19	C:415	81.0	0.476	H	-67.4	-41.3	66.0	0.388	0.088	A:P02647:0.088	PCW PCW PCW	7.641 8.034 6.330	CD2 CD1 CD1	C23 C48 C28
2mse	1	P02647	100.0	4e-140	NMR	2015-06-03	LEU	A:19	A:217	85.0	0.5	H	-64.8	-40.4	62.0	0.365	0.135	B:P02647:0.135	PCW PCW	4.082 8.915	CD2 CD1	C28 C27
2mse	1	P02647	100.0	4e-140	NMR	2015-06-03	LEU	B:19	C:415	76.0	0.447	H	-68.8	-38.2	67.0	0.394	0.053	A:P02647:0.053	PCW PCW	6.991 7.839	CD2 CD1	C27 C24
6cc9	1	P02647	100.0	4e-140	NMR	2018-09-05	LEU	A:19	A:217	106.0	0.624	H	-62.4	-40.8	106.0	0.624	0.0		PCW PCW	3.864 7.952	CD1 CD1	C17 C28
6cc9	1	P02647	100.0	4e-140	NMR	2018-09-05	LEU	C:19	C:415	69.0	0.406	H	-70.9	-38.1	60.0	0.353	0.053	A:P02647:0.053	PCW PCW	9.714 8.388	CD1 CD1	C44 C28
6cch	1	P02647	100.0	4e-140	NMR	2018-08-29	LEU	A:19	A:217	84.0	0.494	H	-64.8	-40.4	61.0	0.359	0.135	C:P02647:0.135	PCW	3.934	CD2	C26
6cch	1	P02647	100.0	4e-140	NMR	2018-08-29	LEU	C:19	C:415	76.0	0.447	H	-68.8	-38.3	67.0	0.394	0.053	A:P02647:0.053	PCW PCW PCW	3.674 9.042 6.740	CD1 CD1 CD1	C28 C28 C28
6ccx	1	P02647	100.0	4e-140	NMR	2018-09-05	LEU	A:19	A:217	93.0	0.547	H	-64.6	-37.9	71.0	0.418	0.129	C:P02647:0.129	PCW PCW	5.470 8.529	CD2 CD2	C28 C48
6ccx	1	P02647	100.0	4e-140	NMR	2018-09-05	LEU	C:19	C:415	83.0	0.488	H	-119.1	-48.9	68.0	0.4	0.088	A:P02647:0.088	PCW PCW	6.853 9.389	CD1 CD1	C28 C28
6w4e	1	P02647	100.0	4e-140	NMR	2020-04-15	LEU	A:19	A:217	92.0	0.541	H	-62.1	-45.9	63.0	0.371	0.17	B:P02647:0.171	PCW PCW	3.587 6.416	CD1 CD1	C22 C28
6w4e	1	P02647	100.0	4e-140	NMR	2020-04-15	LEU	B:19	D:415	90.0	0.529	H	-67.2	-38.1	77.0	0.453	0.076	A:P02647:0.076	PCW PCW PCW	9.622 9.189 6.300	CD2 CD1 CD1	C24 C48 C28
6w4f	1	P02647	100.0	4e-140	NMR	2020-04-29	LEU	A:19	A:217	90.0	0.529	H	-68.5	-40.6	53.0	0.312	0.217	B:P02647:0.218	PCW PCW	3.762 5.219	CD1 CD1	C23 C28
6w4f	1	P02647	100.0	4e-140	NMR	2020-04-29	LEU	B:19	D:415	77.0	0.453	H	-70.3	-38.3	58.0	0.341	0.112	A:P02647:0.112	PCW PCW	5.581 5.650	CD2 CD1	C22 C28
7rsc	2	P02647	100.0	4e-140	NMR	2021-09-22	LEU	C:19	D:260	90.0	0.529	H	-64.4	-54.8	79.0	0.465	0.064	D:P02647:0.065	7Q9	7.962	O	C317
7rsc	2	P02647	100.0	4e-140	NMR	2021-09-22	LEU	D:19	E:560	89.0	0.524	H	-64.2	-44.9	77.0	0.453	0.071	C:P02647:0.071	7Q9 17F	9.585 8.592	O H	C318 C38
7rse	2	P02647	100.0	4e-140	NMR	2021-09-22	LEU	C:19	D:260	107.0	0.629	H	-71.5	-44.9	84.0	0.494	0.135	D:P02647:0.135	7Q9 7Q9	9.328 7.695	O H	C316 C39
7rse	2	P02647	100.0	4e-140	NMR	2021-09-22	LEU	D:19	E:560	107.0	0.629	H	-62.0	-38.0	76.0	0.447	0.182	C:P02647:0.182	17F	7.676	H	C38
7kjr	2	P02647	100.0	8e-133	EM	2020-11-18	LEU	C:27	C:28	121.0	0.712	H	-64.3	-38.6	121.0	0.712	0.0		PEE	7.868	O	C33
7kjr	2	P02647	100.0	8e-133	EM	2020-11-18	LEU	D:27	D:28	106.0	0.624	H	-67.8	-31.9	100.0	0.588	0.036	A:P0DTC3:0.035	PEE	7.110	CD2	C32
3r2p	1	P02647	100.0	4e-132	X-RAY	2011-09-21	LEU	A:61	A:60	54.0	0.318	H	-77.5	-43.1	0.0	0.0	0.318	A:P02647:0.318	HOH	6.613	O	O
6clz	2	P02647	89.57	2e-127	NMR	2018-12-12	LEU	B:6	B:60	101.0	0.594	H	-55.3	-51.9	38.0	0.224	0.37	C:P02647:0.371	PX4 PX4 PX4 PX4 PX4 PX4 PX4 PX4 PX4	7.379 2.151 5.172 9.354 4.941 7.860 9.152 7.201 2.658	HD13 HG HD21 HD22 HD21 HD23 HD23 HD22 HD22	H64 H64 H39 H35 H69 H72 H71 H43 H68
6clz	2	P02647	89.57	2e-127	NMR	2018-12-12	LEU	C:6	C:60	92.0	0.541	H	-62.4	-46.5	37.0	0.218	0.323	B:P02647:0.324	PX4 PX4 PX4 PX4	7.238 8.812 6.061 3.075	HD21 HD23 HD23 HD23	H30 H45 H63 H23
6cm1	2	P02647	89.57	2e-127	NMR	2018-12-12	LEU	B:6	B:60	88.0	0.518	H	-61.9	-43.4	27.0	0.159	0.359	C:P02647:0.359	PX4 PX4 PX4 PX4 PX4 PX4	7.575 8.926 6.314 6.272 4.646 2.873	HG HD23 HD23 HD23 HG HG	H46 H33 H31 H44 H43 H44
6cm1	2	P02647	89.57	2e-127	NMR	2018-12-12	LEU	C:6	C:60	86.0	0.506	H	-62.5	-39.3	30.0	0.176	0.33	B:P02647:0.329	PX4 PX4 PX4 PX4 PX4	7.293 9.224 6.232 7.896 8.349	HD23 HD23 HD23 HB3 H	H41 H39 H30 H47 O2
2n5e	1	P02647	88.36	1e-112	NMR	2016-12-21	LEU	A:6	A:60	101.0	0.594	H	-60.9	-43.3	101.0	0.594	0.0
2n5e	1	P02647	88.36	1e-112	NMR	2016-12-21	LEU	B:6	B:60	100.0	0.588	H	-61.0	-43.2	100.0	0.588	0.0

AlphaFold DB

Entity					Residue			Monomer					View
ID	Entity	Uniprot	Identity	Evalue	Name	Label	Auth	ASA	rASA	SS	φ	ψ	View
af-p02647-f1	1	P02647	100.0	0.0	LEU	A:84	A:84	89.0	0.524	H	-62.3	-43.6

wupsivus
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