Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr11 3735139 . A C CCDS7746.1:NM_016320.4:c.2486aTc>aGc_NP_057404.2:p.829I>S Homo sapiens nucleoporin 98 (NUP98), transcript variant 1, mRNA.
pdb_id: 
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label_comp_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1ko6 1 P52948 100.0 1e-126 X-RAY
 2002-09-04 ILE A:153 A:829 81.0 0.463 H -73.4 -5.8 81.0 0.463 0.0
ILE C:153 C:829 56.0 0.32 T -88.6 13.4 56.0 0.32 0.0
2q5x 1 P52948 99.35 2e-105 X-RAY
 2008-10-14 ILE A:114 A:829 89.0 0.509 T -89.9 5.3 89.0 0.509 0.0 HOH
 5.503
 C
 O
2q5y 1 P52948 100.0 8e-104 X-RAY
 2008-10-14 ILE A:118 A:829 50.0 0.286 T -92.3 3.6 50.0 0.286 0.0 HOH
 3.705
 O
 O
ILE C:118 C:829 59.0 0.337 T -85.7 -1.2 NA NA NA
3tkn 3 Q6PFD9 97.99 7e-100 X-RAY
 2012-04-11 ILE C:118 C:846 67.0 0.383 T -89.0 -11.2 12.0 0.069 0.314 A:P40368:0.314
ILE F:118 F:846 67.0 0.383 T -88.9 -9.8 NA NA NA
ILE I:118 I:846 69.0 0.394 T -88.2 -11.7 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p52948-f1 1 P52948 99.06 0.0 ILE A:846 A:846 64.0 0.366 T -86.4 -8.9