Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr11 61077815 . C A CCDS31576.1:NM_001923.4:c.2353Gag>Tag_NP_001914.3:p.785E>* Homo sapiens damage specific DNA binding protein 1 (DDB1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3e0c 1 Q16531 100.0 0.0 X-RAY
 2008-09-16 GLU A:785 NA:NA DO NA DO DO DO NA NA NA
5hxb 2 Q16531 100.0 0.0 X-RAY
 2016-06-29 GLU B:785 Y:785 132.0 0.695 E -76.0 150.2 131.0 0.689 0.006 C:Q96SW2:0.005
GLU D:785 B:785 147.0 0.774 E -76.8 150.5 NA NA NA
5jk7 1 Q16531 100.0 0.0 X-RAY
 2016-10-05 GLU A:785 A:785 104.0 0.547 E -94.2 121.6 104.0 0.547 0.0
GLU B:785 B:785 70.0 NA E -74.0 137.4 NA NA NA
5v3o 1 Q16531 100.0 0.0 X-RAY
 2017-05-03 GLU A:785 A:785 126.0 0.663 E -91.8 146.9 122.0 0.642 0.021 B:Q96SW2:0.021
6dsz 1 Q16531 100.0 0.0 X-RAY
 2018-12-12 GLU A:785 A:785 114.0 0.6 E -116.8 115.3 114.0 0.6 0.0
GLU B:785 B:785 98.0 0.516 62.8 72.8 NA NA NA
6pai 1 Q16531 100.0 0.0 X-RAY
 2019-09-18 GLU A:785 A:785 114.0 0.6 E -118.5 150.1 107.0 0.563 0.037 B:Q66K64:0.037
6sj7 2 Q16531 100.0 0.0 EM
 2019-12-18 GLU B:785 B:785 94.0 0.495 -136.9 141.7 91.0 0.479 0.016 A:Q66K64:0.016
6uml 1 Q16531 100.0 0.0 X-RAY
 2020-04-15 GLU A:785 A:785 139.0 0.732 -79.0 164.8 133.0 0.7 0.032 B:Q96SW2:0.032
6xk9 2 Q16531 100.0 0.0 X-RAY
 2020-12-02 GLU B:785 Y:785 141.0 0.742 E -83.7 148.5 138.0 0.726 0.016 C:Q96SW2:0.016
GLU E:785 B:785 124.0 0.653 E -82.8 148.5 NA NA NA
7lps 1 Q16531 100.0 0.0 X-RAY
 2021-06-02 GLU A:785 A:785 102.0 0.537 E -96.6 136.9 65.0 0.342 0.195 B:Q96SW2:0.195
GLU D:785 D:785 101.0 0.532 E -96.6 137.0 NA NA NA
GLU G:785 G:785 106.0 0.558 E -96.7 135.7 NA NA NA
GLU J:785 J:785 107.0 0.563 E -97.1 136.4 NA NA NA
7oop 26 Q16531 100.0 0.0 EM
 2021-10-06 GLU Z:785 d:785 85.0 0.447 -150.6 143.2 85.0 0.447 0.0
6zue 1 Q16531 100.0 0.0 X-RAY
 2021-07-28 GLU A:787 A:785 102.0 0.537 E -93.2 137.7 102.0 0.537 0.0
6zx9 1 Q16531 100.0 0.0 X-RAY
 2021-07-21 GLU A:787 A:785 112.0 0.589 E -96.7 145.7 112.0 0.589 0.0 HOH
 5.028
 OE2
 O
7oo3 20 Q16531 100.0 0.0 EM
 2021-10-06 GLU T:788 d:785 112.0 0.589 -154.5 139.8 112.0 0.589 0.0
7oob 14 Q16531 100.0 0.0 EM
 2021-10-13 GLU N:788 d:785 118.0 0.621 -152.7 142.9 118.0 0.621 0.0
7opc 26 Q16531 100.0 0.0 EM
 2021-10-13 GLU Z:788 d:785 123.0 0.647 -152.6 142.9 123.0 0.647 0.0
7opd 26 Q16531 100.0 0.0 EM
 2021-10-06 GLU Z:788 d:785 123.0 0.647 -152.6 143.0 123.0 0.647 0.0
4a0l 1 Q16531 100.0 0.0 X-RAY
 2011-12-14 GLU A:789 A:785 133.0 0.7 E -87.7 136.4 133.0 0.7 0.0
GLU C:789 C:785 134.0 0.705 E -87.7 136.5 NA NA NA
6r8y 8 Q16531 100.0 0.0 EM
 2019-06-12 GLU K:789 K:785 110.0 0.579 -83.4 160.0 110.0 0.579 0.0
6r8z 7 Q16531 100.0 0.0 EM
 2019-06-12 GLU K:808 K:785 89.0 0.468 -79.9 157.6 89.0 0.468 0.0
6r90 7 Q16531 100.0 0.0 EM
 2019-06-12 GLU K:808 K:785 97.0 0.511 -81.0 152.0 90.0 0.474 0.037 L:Q92466:0.037
6r91 7 Q16531 100.0 0.0 EM
 2019-06-12 GLU K:808 K:785 96.0 0.505 -82.3 156.5 96.0 0.505 0.0
6r92 8 Q16531 100.0 0.0 EM
 2019-06-12 GLU L:808 K:785 106.0 0.558 E -84.1 154.2 106.0 0.558 0.0
4a0k 3 Q16531 100.0 0.0 X-RAY
 2011-12-14 GLU C:804 C:785 128.0 0.674 E -87.8 136.9 122.0 0.642 0.032 D:Q2YDS1:0.032
4a11 1 Q16531 100.0 0.0 X-RAY
 2011-12-07 GLU A:804 A:785 130.0 0.684 E -140.8 130.2 130.0 0.684 0.0
7okq 1 Q16531 100.0 0.0 EM
 2021-10-13 GLU A:804 A:785 84.0 NA E -118.3 133.4 84.0 NA NA
GLU E:804 E:785 80.0 NA E -129.3 155.4 NA NA NA
GLU I:804 I:785 80.0 NA E -129.4 155.4 NA NA NA
GLU M:804 M:785 80.0 NA E -129.3 155.4 NA NA NA
3ei1 1 Q16531 100.0 0.0 X-RAY
 2009-01-20 GLU A:803 A:785 134.0 0.705 E -86.4 162.8 131.0 0.689 0.016 B:Q2YDS1:0.016
 HOH
 8.688
 OE2
 O
3ei2 1 Q16531 100.0 0.0 X-RAY
 2009-01-20 GLU A:803 A:785 135.0 0.711 E -87.7 136.6 130.0 0.684 0.027 B:Q2YDS1:0.026
 HOH
 4.937
 O
 O
3ei3 1 Q16531 100.0 0.0 X-RAY
 2009-01-20 GLU A:803 A:785 129.0 0.679 E -73.7 141.7 129.0 0.679 0.0 HOH
 4.133
 OE1
 O
4ci1 1 Q16531 100.0 0.0 X-RAY
 2014-07-16 GLU A:803 A:785 126.0 0.663 E -121.3 119.2 89.0 0.468 0.195 B:P0CF65:0.195
4ci2 1 Q16531 100.0 0.0 X-RAY
 2014-07-16 GLU A:803 A:785 121.0 0.637 E -131.3 109.7 82.0 0.432 0.205 B:P0CF65:0.205
4ci3 1 Q16531 100.0 0.0 X-RAY
 2014-07-16 GLU A:803 A:785 122.0 0.642 E -124.5 121.6 85.0 0.447 0.195 B:P0CF65:0.195
6fcv 1 Q16531 100.0 0.0 X-RAY
 2019-01-30 GLU A:803 A:785 125.0 0.658 E -143.2 116.6 125.0 0.658 0.0
4tz4 1 Q16531 100.0 0.0 X-RAY
 2014-08-06 GLU A:784 A:785 111.0 0.584 E -77.0 150.4 111.0 0.584 0.0
3i7h 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 GLU A:788 A:785 114.0 0.6 E -103.7 145.7 114.0 0.6 0.0
3i7k 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 GLU A:788 A:785 120.0 0.632 E -118.0 140.1 120.0 0.632 0.0
3i7l 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 GLU A:788 A:785 121.0 0.637 E -98.9 143.3 115.0 0.605 0.032 B:Q92466:0.032
3i7n 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 GLU A:788 A:785 108.0 0.568 E -98.4 151.5 100.0 0.526 0.042 B:Q8N5D0:0.042
3i7o 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 GLU A:788 A:785 113.0 0.595 E -90.5 137.3 113.0 0.595 0.0
3i7p 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 GLU A:788 A:785 120.0 0.632 E -101.2 147.4 120.0 0.632 0.0
3i89 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 GLU A:788 A:785 110.0 0.579 E -95.1 148.7 110.0 0.579 0.0
3i8c 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 GLU A:788 A:785 123.0 0.647 E -110.9 116.3 123.0 0.647 0.0
3i8e 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 GLU A:788 A:785 125.0 0.658 E -103.5 136.9 125.0 0.658 0.0
GLU B:788 B:785 123.0 0.647 E -97.8 142.3 NA NA NA
2b5l 1 13435359 99.74 0.0 X-RAY
 2006-02-28 GLU A:785 A:785 115.0 0.605 E -87.0 152.6 115.0 0.605 0.0
GLU B:785 B:785 121.0 0.637 E -105.3 148.7 NA NA NA
2b5m 1 13435359 99.74 0.0 X-RAY
 2006-02-28 GLU A:785 A:785 112.0 0.589 E -129.1 141.8 112.0 0.589 0.0
2hye 1 Q16531 99.74 0.0 X-RAY
 2006-10-03 GLU A:785 A:785 94.0 0.495 -99.6 147.6 94.0 0.495 0.0
4a0b 1 Q16531 99.91 0.0 X-RAY
 2011-11-30 GLU A:804 A:785 120.0 0.632 E -91.1 135.1 120.0 0.632 0.0
GLU C:804 C:785 146.0 0.768 E -52.2 124.9 NA NA NA
4a0a 1 Q16531 99.91 0.0 X-RAY
 2011-11-30 GLU A:804 A:785 207.0 1.0 360.0 -30.4 195.0 1.0 0.0 B:Q2YDS1:0.063
4a08 1 Q16531 99.91 0.0 X-RAY
 2011-11-30 GLU A:804 A:785 150.0 0.789 -62.6 126.8 150.0 0.789 0.0 HOH
 9.315
 OE2
 O
4a09 1 Q16531 99.91 0.0 X-RAY
 2011-11-30 GLU A:804 A:785 124.0 0.653 -69.3 126.8 97.0 0.511 0.142 B:Q2YDS1:0.142
 HOH
 7.548
 OE1
 O
4e54 1 Q16531 100.0 0.0 X-RAY
 2012-08-08 GLU A:795 A:785 116.0 0.611 E -87.6 136.5 116.0 0.611 0.0
4e5z 1 Q16531 100.0 0.0 X-RAY
 2012-08-22 GLU A:795 A:785 108.0 0.568 67.0 112.9 92.0 0.484 0.084 B:Q92466:0.084
3ei4 1 Q16531 99.74 0.0 X-RAY
 2009-01-20 GLU A:803 A:785 140.0 0.737 S -127.1 -66.5 140.0 0.737 0.0
GLU C:803 C:785 139.0 0.732 S -127.2 -66.8 NA NA NA
GLU E:803 E:785 141.0 0.742 S -127.3 -66.7 NA NA NA
6ud7 2 Q16531 100.0 0.0 X-RAY
 2019-12-18 GLU B:481 B:785 118.0 0.621 E -79.0 123.7 106.0 0.558 0.063 A:Q66K64:0.063
 HOH
 3.947
 OE1
 O
6ue5 2 Q16531 100.0 0.0 X-RAY
 2019-12-18 GLU B:481 B:785 110.0 0.579 E -81.4 126.3 98.0 0.516 0.063 A:Q66K64:0.063
 HOH
 3.878
 OE2
 O
6td3 1 Q16531 100.0 0.0 X-RAY
 2020-06-17 GLU A:485 A:785 127.0 0.668 E -82.2 151.9 127.0 0.668 0.0
GLU D:485 D:785 133.0 0.7 E -80.6 155.2 NA NA NA
GLU G:485 G:785 129.0 0.679 E -82.1 152.5 NA NA NA
5fqd 1 Q16531 100.0 0.0 X-RAY
 2016-02-24 GLU A:501 A:785 112.0 0.589 E -67.0 134.1 77.0 0.405 0.184 B:Q96SW2:0.184
 HOH
 8.535
 OE1
 O
GLU D:501 D:785 115.0 0.605 E -65.7 133.8 NA NA NA
6h0f 1 ? 100.0 0.0 X-RAY
 2018-11-07 GLU A:501 A:785 111.0 0.584 E -83.2 146.5 90.0 0.474 0.11 B:Q96SW2:0.111
GLU D:501 D:785 112.0 0.589 E -83.2 146.5 NA NA NA
GLU G:501 G:785 110.0 0.579 E -83.1 146.3 NA NA NA
GLU J:501 J:785 115.0 0.605 E -83.1 146.4 NA NA NA
6h0g 1 Q16531 100.0 0.0 X-RAY
 2018-11-07 GLU A:501 A:785 136.0 0.716 E -95.4 149.6 113.0 0.595 0.121 B:Q96SW2:0.121
GLU D:501 D:785 138.0 0.726 E -95.2 149.2 NA NA NA
6bn7 1 Q16531 100.0 0.0 X-RAY
 2018-05-30 GLU A:509 A:785 105.0 0.553 -70.5 144.0 73.0 0.384 0.169 B:Q96SW2:0.168
6bn8 1 Q16531 100.0 0.0 X-RAY
 2018-06-06 GLU A:509 A:785 115.0 0.605 E -81.6 145.0 73.0 0.384 0.221 B:Q96SW2:0.221
6bn9 1 Q16531 100.0 0.0 X-RAY
 2018-05-30 GLU A:509 A:785 112.0 0.589 E -76.1 146.0 75.0 0.395 0.194 B:Q96SW2:0.195
6bnb 1 Q16531 100.0 0.0 X-RAY
 2018-05-30 GLU A:509 A:785 133.0 0.7 E -75.7 121.3 99.0 0.521 0.179 B:Q96SW2:0.179
6boy 1 Q16531 100.0 0.0 X-RAY
 2018-05-30 GLU A:509 A:785 114.0 0.6 E -72.8 144.3 81.0 0.426 0.174 B:Q96SW2:0.174
6q0r 1 Q16531 100.0 0.0 X-RAY
 2019-11-13 GLU A:509 A:785 99.0 NA 360.0 135.4 97.0 NA NA B:Q66K64:NA
6q0v 1 Q16531 100.0 0.0 X-RAY
 2019-11-13 GLU A:509 A:785 157.0 0.826 360.0 144.7 156.0 0.821 0.005 B:Q66K64:0.005
6q0w 1 Q16531 100.0 0.0 X-RAY
 2019-11-13 GLU A:509 A:785 166.0 0.874 360.0 142.3 162.0 0.853 0.021 B:Q66K64:0.021

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q16531-f1 1 Q16531 100.0 0.0 GLU A:785 A:785 116.0 0.611 E -81.1 131.0