Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr11 61099023 . T A CCDS31576.1:NM_001923.4:c.202Agg>Tgg_NP_001914.3:p.68R>W Homo sapiens damage specific DNA binding protein 1 (DDB1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3e0c 1 Q16531 100.0 0.0 X-RAY
 2008-09-16 ARG A:68 A:68 124.0 0.551 -116.2 102.8 124.0 0.551 0.0 HOH
 6.856
 NH1
 O
5hxb 2 Q16531 100.0 0.0 X-RAY
 2016-06-29 ARG B:68 Y:68 99.0 0.44 -115.4 102.4 99.0 0.44 0.0
ARG D:68 B:68 52.0 NA -113.9 103.0 NA NA NA
5jk7 1 Q16531 100.0 0.0 X-RAY
 2016-10-05 ARG A:68 A:68 89.0 0.396 -109.7 96.3 89.0 0.396 0.0
ARG B:68 B:68 91.0 0.404 -114.0 98.0 NA NA NA
5v3o 1 Q16531 100.0 0.0 X-RAY
 2017-05-03 ARG A:68 A:68 103.0 0.458 -127.1 100.5 103.0 0.458 0.0
6dsz 1 Q16531 100.0 0.0 X-RAY
 2018-12-12 ARG A:68 A:68 91.0 0.404 -120.5 116.1 91.0 0.404 0.0
ARG B:68 B:68 89.0 0.396 -116.2 116.1 NA NA NA
6pai 1 Q16531 100.0 0.0 X-RAY
 2019-09-18 ARG A:68 A:68 93.0 0.413 -127.5 104.1 93.0 0.413 0.0
6sj7 2 Q16531 100.0 0.0 EM
 2019-12-18 ARG B:68 B:68 102.0 0.453 -116.3 111.4 102.0 0.453 0.0
6uml 1 Q16531 100.0 0.0 X-RAY
 2020-04-15 ARG A:68 A:68 102.0 0.453 -121.6 105.8 102.0 0.453 0.0
6xk9 2 Q16531 100.0 0.0 X-RAY
 2020-12-02 ARG B:68 Y:68 96.0 0.427 -128.6 109.7 96.0 0.427 0.0
ARG E:68 B:68 95.0 0.422 -130.5 113.1 NA NA NA
7lps 1 Q16531 100.0 0.0 X-RAY
 2021-06-02 ARG A:68 A:68 94.0 0.418 -130.0 106.8 94.0 0.418 0.0
ARG D:68 D:68 95.0 0.422 -130.3 106.9 NA NA NA
ARG G:68 G:68 92.0 0.409 -131.0 106.9 NA NA NA
ARG J:68 J:68 93.0 0.413 -131.1 107.0 NA NA NA
7oop 26 Q16531 100.0 0.0 EM
 2021-10-06 ARG Z:68 d:68 99.0 0.44 -117.1 94.6 99.0 0.44 0.0
6zue 1 Q16531 100.0 0.0 X-RAY
 2021-07-28 ARG A:70 A:68 100.0 0.444 -108.2 106.8 100.0 0.444 0.0
6zx9 1 Q16531 100.0 0.0 X-RAY
 2021-07-21 ARG A:70 A:68 73.0 0.324 -121.3 100.2 73.0 0.324 0.0 HOH
 3.170
 NH1
 O
7oo3 20 Q16531 100.0 0.0 EM
 2021-10-06 ARG T:71 d:68 102.0 0.453 -118.7 95.2 102.0 0.453 0.0
7oob 14 Q16531 100.0 0.0 EM
 2021-10-13 ARG N:71 d:68 97.0 0.431 -121.1 97.2 97.0 0.431 0.0
7opc 26 Q16531 100.0 0.0 EM
 2021-10-13 ARG Z:71 d:68 97.0 0.431 -120.2 98.4 97.0 0.431 0.0
7opd 26 Q16531 100.0 0.0 EM
 2021-10-06 ARG Z:71 d:68 97.0 0.431 -120.3 98.4 97.0 0.431 0.0
4a0l 1 Q16531 100.0 0.0 X-RAY
 2011-12-14 ARG A:72 A:68 99.0 0.44 -112.7 100.8 99.0 0.44 0.0
ARG C:72 C:68 100.0 0.444 -112.7 100.9 NA NA NA
6r8y 8 Q16531 100.0 0.0 EM
 2019-06-12 ARG K:72 K:68 103.0 0.458 -133.0 92.3 103.0 0.458 0.0
6r8z 7 Q16531 100.0 0.0 EM
 2019-06-12 ARG K:91 K:68 93.0 0.413 -133.2 95.0 93.0 0.413 0.0
6r90 7 Q16531 100.0 0.0 EM
 2019-06-12 ARG K:91 K:68 109.0 0.484 -138.8 90.0 109.0 0.484 0.0
6r91 7 Q16531 100.0 0.0 EM
 2019-06-12 ARG K:91 K:68 89.0 0.396 -136.7 98.3 89.0 0.396 0.0
6r92 8 Q16531 100.0 0.0 EM
 2019-06-12 ARG L:91 K:68 85.0 0.378 -137.6 95.9 85.0 0.378 0.0
4a0k 3 Q16531 100.0 0.0 X-RAY
 2011-12-14 ARG C:87 C:68 98.0 0.436 -112.7 100.8 98.0 0.436 0.0
4a11 1 Q16531 100.0 0.0 X-RAY
 2011-12-07 ARG A:87 A:68 93.0 0.413 -127.1 92.5 93.0 0.413 0.0
7okq 1 Q16531 100.0 0.0 EM
 2021-10-13 ARG A:87 A:68 56.0 NA -130.2 92.7 56.0 NA NA
ARG E:87 E:68 56.0 NA -130.1 92.6 NA NA NA
ARG I:87 I:68 56.0 NA -130.2 92.6 NA NA NA
ARG M:87 M:68 57.0 NA -130.2 92.7 NA NA NA
3ei1 1 Q16531 100.0 0.0 X-RAY
 2009-01-20 ARG A:86 A:68 100.0 0.444 -112.8 103.9 100.0 0.444 0.0 HOH
 2.963
 NH2
 O
3ei2 1 Q16531 100.0 0.0 X-RAY
 2009-01-20 ARG A:86 A:68 99.0 0.44 -112.9 100.9 99.0 0.44 0.0 HOH
 5.009
 N
 O
3ei3 1 Q16531 100.0 0.0 X-RAY
 2009-01-20 ARG A:86 A:68 95.0 0.422 -128.5 102.2 95.0 0.422 0.0 HOH
 2.779
 N
 O
4ci1 1 Q16531 100.0 0.0 X-RAY
 2014-07-16 ARG A:86 A:68 79.0 0.351 -121.3 94.1 79.0 0.351 0.0
4ci2 1 Q16531 100.0 0.0 X-RAY
 2014-07-16 ARG A:86 A:68 80.0 0.356 -123.5 93.5 80.0 0.356 0.0
4ci3 1 Q16531 100.0 0.0 X-RAY
 2014-07-16 ARG A:86 A:68 81.0 0.36 -123.2 94.8 81.0 0.36 0.0
6fcv 1 Q16531 100.0 0.0 X-RAY
 2019-01-30 ARG A:86 A:68 94.0 0.418 -130.8 111.9 94.0 0.418 0.0
4tz4 1 Q16531 100.0 0.0 X-RAY
 2014-08-06 ARG A:67 A:68 93.0 0.413 -112.4 109.8 93.0 0.413 0.0
3i7h 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ARG A:71 A:68 133.0 0.591 -112.0 104.4 133.0 0.591 0.0
3i7k 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ARG A:71 A:68 121.0 0.538 -115.1 115.5 121.0 0.538 0.0
3i7l 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ARG A:71 A:68 98.0 0.436 -129.7 99.8 98.0 0.436 0.0
3i7n 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ARG A:71 A:68 80.0 0.356 -147.5 109.6 80.0 0.356 0.0
3i7o 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ARG A:71 A:68 85.0 0.378 -154.6 113.6 85.0 0.378 0.0
3i7p 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ARG A:71 A:68 93.0 0.413 -144.3 108.9 93.0 0.413 0.0
3i89 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ARG A:71 A:68 83.0 0.369 -149.6 114.2 83.0 0.369 0.0
3i8c 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ARG A:71 A:68 86.0 0.382 -147.3 118.9 86.0 0.382 0.0
3i8e 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ARG A:71 A:68 96.0 0.427 -143.5 106.8 96.0 0.427 0.0
ARG B:71 B:68 99.0 0.44 -145.3 112.8 NA NA NA
2b5l 1 13435359 99.74 0.0 X-RAY
 2006-02-28 ARG A:68 A:68 98.0 0.436 -137.0 104.1 98.0 0.436 0.0
ARG B:68 B:68 117.0 0.52 -116.6 91.2 NA NA NA
2b5m 1 13435359 99.74 0.0 X-RAY
 2006-02-28 ARG A:68 A:68 131.0 0.582 -138.3 104.9 131.0 0.582 0.0
2hye 1 Q16531 99.74 0.0 X-RAY
 2006-10-03 ARG A:68 A:68 113.0 0.502 -113.0 83.4 113.0 0.502 0.0
4a0b 1 Q16531 99.91 0.0 X-RAY
 2011-11-30 ARG A:87 A:68 108.0 0.48 -112.7 100.3 108.0 0.48 0.0
ARG C:87 C:68 104.0 0.462 -109.9 101.9 NA NA NA
4a0a 1 Q16531 99.91 0.0 X-RAY
 2011-11-30 ARG A:87 A:68 117.0 0.52 -120.4 89.8 117.0 0.52 0.0
4a08 1 Q16531 99.91 0.0 X-RAY
 2011-11-30 ARG A:87 A:68 94.0 0.418 -117.0 106.8 94.0 0.418 0.0
4a09 1 Q16531 99.91 0.0 X-RAY
 2011-11-30 ARG A:87 A:68 97.0 0.431 -116.2 102.0 97.0 0.431 0.0
4e54 1 Q16531 100.0 0.0 X-RAY
 2012-08-08 ARG A:78 A:68 123.0 0.547 -116.8 101.3 123.0 0.547 0.0
4e5z 1 Q16531 100.0 0.0 X-RAY
 2012-08-22 ARG A:78 A:68 97.0 0.431 -122.1 109.4 97.0 0.431 0.0
3ei4 1 Q16531 99.74 0.0 X-RAY
 2009-01-20 ARG A:86 A:68 110.0 0.489 -122.0 105.2 110.0 0.489 0.0
ARG C:86 C:68 108.0 0.48 -123.4 104.9 NA NA NA
ARG E:86 E:68 108.0 0.48 -122.0 105.6 NA NA NA
6ud7 2 Q16531 100.0 0.0 X-RAY
 2019-12-18 ARG B:68 B:68 95.0 0.422 -124.8 103.3 95.0 0.422 0.0 HOH
 2.856
 N
 O
6ue5 2 Q16531 100.0 0.0 X-RAY
 2019-12-18 ARG B:68 B:68 99.0 0.44 -125.7 102.1 99.0 0.44 0.0 HOH
 2.990
 NH1
 O
6td3 1 Q16531 100.0 0.0 X-RAY
 2020-06-17 ARG A:72 A:68 98.0 0.436 -109.7 94.4 98.0 0.436 0.0
ARG D:72 D:68 96.0 0.427 -109.8 94.6 NA NA NA
ARG G:72 G:68 134.0 0.596 -110.0 97.4 NA NA NA
5fqd 1 Q16531 100.0 0.0 X-RAY
 2016-02-24 ARG A:88 A:68 103.0 0.458 -119.1 98.4 103.0 0.458 0.0
ARG D:88 D:68 120.0 0.533 -133.0 103.5 NA NA NA
6h0f 1 ? 100.0 0.0 X-RAY
 2018-11-07 ARG A:88 A:68 100.0 0.444 -115.3 101.6 100.0 0.444 0.0
ARG D:88 D:68 99.0 0.44 -115.2 101.6 NA NA NA
ARG G:88 G:68 101.0 0.449 -115.2 101.6 NA NA NA
ARG J:88 J:68 103.0 0.458 -115.4 101.5 NA NA NA
6h0g 1 Q16531 100.0 0.0 X-RAY
 2018-11-07 ARG A:88 A:68 98.0 0.436 -123.5 105.5 98.0 0.436 0.0
ARG D:88 D:68 99.0 0.44 -123.9 105.9 NA NA NA
6bn7 1 Q16531 100.0 0.0 X-RAY
 2018-05-30 ARG A:96 A:68 92.0 0.409 -124.0 108.9 92.0 0.409 0.0
6bn8 1 Q16531 100.0 0.0 X-RAY
 2018-06-06 ARG A:96 A:68 91.0 0.404 -133.4 108.0 91.0 0.404 0.0
6bn9 1 Q16531 100.0 0.0 X-RAY
 2018-05-30 ARG A:96 A:68 96.0 0.427 -141.4 103.5 96.0 0.427 0.0
6bnb 1 Q16531 100.0 0.0 X-RAY
 2018-05-30 ARG A:96 A:68 117.0 0.52 -126.0 102.4 117.0 0.52 0.0
6boy 1 Q16531 100.0 0.0 X-RAY
 2018-05-30 ARG A:96 A:68 88.0 0.391 -129.5 98.9 88.0 0.391 0.0
6q0r 1 Q16531 100.0 0.0 X-RAY
 2019-11-13 ARG A:96 A:68 93.0 0.413 -125.9 96.7 93.0 0.413 0.0
6q0v 1 Q16531 100.0 0.0 X-RAY
 2019-11-13 ARG A:96 A:68 94.0 0.418 -122.9 97.5 94.0 0.418 0.0
6q0w 1 Q16531 100.0 0.0 X-RAY
 2019-11-13 ARG A:96 A:68 97.0 0.431 -125.6 97.2 97.0 0.431 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q16531-f1 1 Q16531 100.0 0.0 ARG A:68 A:68 96.0 0.427 -117.2 100.3