Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr11 65770827 . G A CCDS8125.1:NM_001143985.1:c.106Gaa>Aaa_NP_001137457.1:p.36E>K Homo sapiens barrier to autointegration factor 1 (BANF1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1ci4 1 O75531 100.0 6e-62 X-RAY
 2000-08-16 GLU A:36 A:36 153.0 0.805 H -61.9 -25.0 153.0 0.805 0.0 HOH
 5.582
 OE1
 O
GLU B:36 B:36 163.0 0.858 H -61.8 -24.1 163.0 0.858 0.0 HOH
 5.118
 N
 O
2bzf 1 O75531 100.0 6e-62 X-RAY
 2005-09-15 GLU A:36 A:36 133.0 0.7 H -59.9 -38.3 133.0 0.7 0.0 HOH
 8.733
 N
 O
6unt 1 O75531 100.0 6e-62 X-RAY
 2020-10-07 GLU A:36 A:36 154.0 0.811 H -62.7 -25.3 154.0 0.811 0.0 EOH
HOH
 7.715
5.085
 C
OE1
 H23
O
GLU B:36 B:36 130.0 0.684 H -58.4 -29.4 130.0 0.684 0.0 EOH
HOH
 7.511
8.784
 C
OE1
 H22
O
6ure 1 O75531 100.0 6e-62 X-RAY
 2020-10-07 GLU A:36 A:36 134.0 0.705 H -67.5 -22.6 134.0 0.705 0.0 EOH
HOH
 7.537
5.662
 C
OE2
 H23
O
GLU B:36 B:36 134.0 0.705 H -62.0 -25.9 134.0 0.705 0.0 EOH
HOH
 7.591
8.348
 C
H
 H23
O
6urj 1 O75531 100.0 6e-62 X-RAY
 2020-10-07 GLU A:36 A:36 135.0 0.711 H -67.2 -20.8 135.0 0.711 0.0 EOH
HOH
 7.599
5.566
 C
OE1
 H23
O
GLU B:36 B:36 128.0 0.674 H -55.6 -30.2 128.0 0.674 0.0 EOH
HOH
 7.597
5.863
 O
O
 H11
O
6urk 1 O75531 100.0 6e-62 X-RAY
 2020-10-07 GLU A:36 A:36 129.0 0.679 H -74.5 -7.4 129.0 0.679 0.0 EOH
HOH
 8.362
2.939
 O
OE1
 H12
O
GLU B:36 B:36 131.0 0.689 H -52.7 -35.4 131.0 0.689 0.0 EOH
HOH
 7.300
9.277
 O
H
 H22
O
6url 1 O75531 100.0 6e-62 X-RAY
 2020-10-07 GLU A:36 A:36 131.0 0.689 H -66.5 -28.1 131.0 0.689 0.0 EOH
HOH
 7.891
5.177
 C
OE1
 H23
O
GLU B:36 B:36 142.0 0.747 H -60.9 -23.6 142.0 0.747 0.0 EOH
HOH
 7.589
7.947
 C
H
 H23
O
6urn 1 O75531 100.0 6e-62 X-RAY
 2020-10-07 GLU A:36 A:36 159.0 0.837 H -62.8 -28.1 159.0 0.837 0.0 EOH
HOH
 7.702
4.829
 C
OE1
 H23
O
GLU B:36 B:36 142.0 0.747 H -63.3 -16.4 142.0 0.747 0.0 EOH
HOH
 7.572
7.828
 C
H
 H23
O
6urr 1 O75531 100.0 6e-62 X-RAY
 2020-10-07 GLU A:36 A:36 135.0 0.711 H -67.2 -28.2 135.0 0.711 0.0 EOH
HOH
 7.056
7.551
 O
HG3
 H11
O
GLU B:36 B:36 134.0 0.705 H -58.0 -29.5 134.0 0.705 0.0 EOH
HOH
 7.320
8.723
 O
H
 H21
O
6urz 1 O75531 100.0 6e-62 X-RAY
 2020-10-07 GLU A:36 A:36 140.0 0.737 H -64.2 -24.1 140.0 0.737 0.0 EOH
HOH
 7.898
5.077
 C
OE1
 H22
O
GLU B:36 B:36 141.0 0.742 H -58.8 -27.5 141.0 0.742 0.0 EOH
HOH
 7.409
5.493
 C
O
 H23
O
6us0 1 O75531 100.0 6e-62 X-RAY
 2020-10-07 GLU A:36 A:36 135.0 0.711 H -66.1 -27.6 135.0 0.711 0.0 EOH
HOH
 7.962
4.971
 C
OE1
 H22
O
GLU B:36 B:36 135.0 0.711 H -57.3 -29.7 135.0 0.711 0.0 EOH
HOH
 7.781
8.627
 C
OE1
 H23
O
6us1 1 O75531 100.0 6e-62 X-RAY
 2020-10-07 GLU A:36 A:36 137.0 0.721 H -65.1 -25.0 137.0 0.721 0.0 EOH
HOH
 7.589
6.098
 C
O
 H23
O
GLU B:36 B:36 131.0 0.689 H -55.1 -30.6 131.0 0.689 0.0 EOH
HOH
 7.817
8.782
 C
OE1
 H22
O
6us7 1 O75531 100.0 6e-62 X-RAY
 2020-10-07 GLU A:36 A:36 137.0 0.721 H -65.4 -23.9 137.0 0.721 0.0 EOH
HOH
 7.675
5.320
 C
OE1
 H21
O
GLU B:36 B:36 129.0 0.679 H -58.1 -27.4 129.0 0.679 0.0 EOH
HOH
 7.476
5.742
 C
O
 H23
O
6usb 1 O75531 100.0 6e-62 X-RAY
 2020-10-07 GLU A:36 A:36 142.0 0.747 H -63.8 -25.8 142.0 0.747 0.0 EOH
HOH
 7.830
5.038
 C
OE1
 H23
O
GLU B:36 B:36 138.0 0.726 H -56.6 -32.5 138.0 0.726 0.0 EOH
HOH
 7.601
8.833
 C
OE2
 H23
O
6usd 1 O75531 100.0 6e-62 X-RAY
 2020-10-07 GLU A:36 A:36 144.0 0.758 H -63.4 -22.2 144.0 0.758 0.0 EOH
HOH
 7.738
8.001
 C
HG3
 H23
O
GLU B:36 B:36 123.0 0.647 H -57.3 -23.4 123.0 0.647 0.0 EOH
HOH
 7.402
5.962
 C
O
 H22
O
6usi 1 O75531 100.0 6e-62 X-RAY
 2020-10-07 GLU A:36 A:36 132.0 0.695 H -63.2 -28.3 132.0 0.695 0.0 EOH
HOH
 7.517
3.347
 O
OE1
 H11
O
GLU B:36 B:36 131.0 0.689 H -54.6 -28.4 131.0 0.689 0.0 EOH
HOH
 7.701
8.688
 O
OE2
 H11
O
6ghd 2 O75531 95.45 3e-58 X-RAY
 2018-08-08 GLU B:35 D:36 130.0 0.684 H -61.0 -33.5 130.0 0.684 0.0 HOH
 8.775
 O
 O
GLU D:35 E:36 133.0 0.7 H -61.9 -29.3 103.0 0.542 0.158 A:P50402:0.158
 SO4
HOH
 4.929
4.442
 O
N
 O3
O
GLU E:35 A:36 109.0 0.574 H -61.1 -29.0 NA NA NA
GLU F:35 C:36 152.0 0.8 H -63.0 -29.8 NA NA NA
7ndy 1 O75531 95.45 3e-58 X-RAY
 2021-04-07 GLU A:36 A:36 142.0 0.747 H -63.5 -32.8 128.0 0.674 0.073 C:P50402:0.074
 HOH
 2.802
 O
 O
GLU B:36 B:36 116.0 0.611 H -66.4 -29.8 116.0 0.611 0.0 EPE
HOH
 6.973
2.457
 O
O
 C2
O
6rpr 2 ? 95.4 2e-57 X-RAY
 2020-03-04 GLU B:34 D:36 120.0 0.632 H -68.3 -20.7 120.0 0.632 0.0 HOH
 7.855
 O
 O
GLU C:34 E:36 161.0 0.847 H -66.8 -28.8 116.0 0.611 0.236 D:None:0.237
 HOH
 3.130
 OE2
 O
7abm 1 O75531 95.35 8e-57 X-RAY
 2021-07-07 GLU A:34 A:36 144.0 0.758 T -75.3 -16.9 144.0 0.758 0.0 CS
 7.256
 O
 CS

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o75531-f1 1 O75531 100.0 2e-62 GLU A:36 A:36 151.0 0.795 T -57.8 -21.2