Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr11 85963204 . A C CCDS8273.1:NM_003797.3:c.282caA>caC_NP_003788.2:p.94Q>H Homo sapiens embryonic ectoderm development (EED), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6c23 4 O75530 100.0 0.0 EM
 2018-01-24 GLN D:94 L:94 86.0 0.478 S -69.5 158.1 86.0 0.478 0.0
6c24 5 O75530 100.0 0.0 EM
 2018-01-24 GLN E:94 L:94 73.0 0.406 S -136.9 156.6 73.0 0.406 0.0
6wkr 3 O75530 100.0 0.0 EM
 2021-02-03 GLN C:94 L:94 97.0 0.539 -97.4 140.0 97.0 0.539 0.0
7kso 2 O75530 100.0 0.0 EM
 2021-02-03 GLN B:94 B:94 87.0 0.483 -137.3 137.3 87.0 0.483 0.0
7ksr 4 O75530 100.0 0.0 EM
 2021-02-03 GLN D:94 B:94 84.0 0.467 -136.8 138.7 84.0 0.467 0.0
7ktp 2 O75530 100.0 0.0 EM
 2021-02-03 GLN B:94 B:94 91.0 0.506 -137.5 137.4 91.0 0.506 0.0
5wg6 2 O75530 100.0 0.0 X-RAY
 2018-06-27 GLN B:95 B:94 103.0 0.572 -118.0 152.9 103.0 0.572 0.0
GLN D:95 NA:NA DO NA DO DO DO NA NA NA
3jpx 1 O75530 100.0 0.0 X-RAY
 2009-10-20 GLN A:55 A:94 103.0 0.572 S -94.8 163.2 103.0 0.572 0.0 HOH
 3.695
 CB
 O
3jzg 1 O75530 100.0 0.0 X-RAY
 2009-12-15 GLN A:55 A:94 93.0 0.517 S -95.6 162.4 93.0 0.517 0.0 HOH
 3.458
 CB
 O
3jzh 1 O75530 100.0 0.0 X-RAY
 2009-12-15 GLN A:55 A:94 98.0 0.544 S -101.1 165.1 98.0 0.544 0.0 HOH
 3.539
 CB
 O
7kxt 1 O75530 100.0 0.0 X-RAY
 2021-02-24 GLN A:55 A:94 90.0 0.5 -93.3 157.1 90.0 0.5 0.0 HOH
 3.647
 CB
 O
GLN B:55 B:94 91.0 0.506 -92.6 156.0 NA NA NA
5wp3 1 O75530 100.0 0.0 X-RAY
 2017-09-13 GLN A:21 A:94 93.0 0.517 -96.4 160.6 93.0 0.517 0.0 UNX
 7.494
 O
 UNK
5h13 1 O75530 99.19 0.0 X-RAY
 2017-01-25 GLN A:29 A:94 94.0 0.522 S -88.0 151.9 94.0 0.522 0.0 LQA
HOH
 3.705
3.828
 OE1
CB
 C31
O
3jzn 1 O75530 100.0 0.0 X-RAY
 2009-12-15 GLN A:19 A:94 88.0 0.489 S -87.6 161.4 88.0 0.489 0.0 HOH
 3.645
 CB
 O
3k26 1 O75530 100.0 0.0 X-RAY
 2009-12-15 GLN A:19 A:94 96.0 0.533 S -102.8 165.9 96.0 0.533 0.0 HOH
 3.513
 NE2
 O
3k27 1 O75530 100.0 0.0 X-RAY
 2009-12-15 GLN A:19 A:94 98.0 0.544 S -106.7 164.8 98.0 0.544 0.0 HOH
 3.433
 NE2
 O
6sfb 1 O75530 100.0 0.0 X-RAY
 2019-09-25 GLN A:19 A:94 93.0 0.517 -100.5 158.0 93.0 0.517 0.0 L9K
HOH
 7.486
2.733
 C
OE1
 C
O
GLN B:19 B:94 91.0 0.506 -101.3 157.0 NA NA NA
6sfc 1 O75530 100.0 0.0 X-RAY
 2019-09-25 GLN A:19 A:94 89.0 0.494 -94.5 153.2 89.0 0.494 0.0 L9W
HOH
 7.444
3.134
 C
OE1
 C
O
GLN B:19 B:94 93.0 0.517 -95.3 153.8 NA NA NA
6yvi 1 O75530 100.0 0.0 X-RAY
 2021-05-12 GLN A:19 A:94 88.0 0.489 S -85.8 154.3 88.0 0.489 0.0 L9W
HOH
 7.368
3.242
 C
OE1
 C
O
GLN B:19 B:94 90.0 0.5 S -99.2 153.1 NA NA NA
6yvj 1 O75530 100.0 0.0 X-RAY
 2021-05-12 GLN A:19 A:94 95.0 0.528 -100.3 157.6 95.0 0.528 0.0 L9W
HOH
 7.518
3.741
 C
NE2
 C
O
GLN B:19 B:94 91.0 0.506 -100.3 157.5 NA NA NA
7p3c 1 O75530 100.0 0.0 X-RAY
 2021-12-08 GLN A:19 A:94 91.0 0.506 S -99.7 158.8 91.0 0.506 0.0 L9W
HOH
 7.559
3.651
 OE1
NE2
 O1
O
GLN B:19 B:94 89.0 0.494 -99.0 156.5 NA NA NA
7p3g 1 O75530 100.0 0.0 X-RAY
 2021-12-08 GLN A:19 A:94 90.0 0.5 S -100.8 154.7 90.0 0.5 0.0 L9W
HOH
 7.431
3.980
 OE1
CB
 O1
O
GLN B:19 B:94 88.0 0.489 S -102.1 155.7 NA NA NA
7p3j 1 O75530 100.0 0.0 X-RAY
 2021-12-08 GLN A:19 A:94 91.0 0.506 S -98.5 156.6 91.0 0.506 0.0 L9W
HOH
 7.516
2.721
 C
OE1
 O1
O
GLN B:19 B:94 93.0 0.517 -99.3 156.4 NA NA NA
5gsa 1 O75530 100.0 0.0 X-RAY
 2017-02-01 GLN A:20 A:94 95.0 0.528 -82.6 153.3 95.0 0.528 0.0 73K
HOH
 6.652
7.370
 OE1
O
 C25
O
GLN B:20 B:94 90.0 0.5 -88.6 158.5 NA NA NA
5h14 1 O75530 100.0 0.0 X-RAY
 2017-01-25 GLN A:20 A:94 94.0 0.522 -95.9 156.8 94.0 0.522 0.0 LQB
HOH
 7.240
3.783
 OE1
CB
 C22
O
GLN B:20 B:94 92.0 0.511 -91.3 154.5 NA NA NA
5h15 1 O75530 100.0 0.0 X-RAY
 2017-01-25 GLN A:20 A:94 95.0 0.528 S -87.5 155.1 95.0 0.528 0.0 LQD
HOH
 8.904
3.722
 OE1
CB
 C15
O
GLN B:20 B:94 92.0 0.511 -88.5 153.3 NA NA NA
5h17 1 O75530 100.0 0.0 X-RAY
 2017-01-25 GLN A:20 A:94 99.0 0.55 -94.2 156.9 99.0 0.55 0.0 LQE
HOH
 8.612
4.017
 C
CB
 C13
O
5h19 1 O75530 100.0 0.0 X-RAY
 2017-01-25 GLN A:20 A:94 96.0 0.533 -83.9 149.7 96.0 0.533 0.0 LQF
HOH
 6.755
4.156
 OE1
C
 C27
O
5h24 1 O75530 100.0 0.0 X-RAY
 2017-01-25 GLN A:20 A:94 92.0 0.511 -87.0 156.6 92.0 0.511 0.0
GLN B:20 B:94 92.0 0.511 -75.9 148.4 NA NA NA
5h25 1 O75530 100.0 0.0 X-RAY
 2017-01-25 GLN A:20 A:94 98.0 0.544 -103.7 145.7 98.0 0.544 0.0 LQH
 8.156
 NE2
 C14
GLN B:20 B:94 97.0 0.539 -81.2 138.6 NA NA NA
5ttw 1 O75530 100.0 0.0 X-RAY
 2017-01-11 GLN A:20 A:94 93.0 0.517 S -107.1 160.9 93.0 0.517 0.0 HOH
 3.440
 NE2
 O
GLN C:20 C:94 96.0 0.533 S -95.7 167.7 NA NA NA
5u5h 1 O75530 100.0 0.0 X-RAY
 2017-01-11 GLN A:20 A:94 92.0 0.511 S -92.7 155.1 92.0 0.511 0.0 HOH
 3.854
 CB
 O
5u5k 1 O75530 100.0 0.0 X-RAY
 2017-01-11 GLN A:20 A:94 93.0 0.517 S -88.5 149.0 93.0 0.517 0.0 HOH
 3.902
 CB
 O
5u5t 1 O75530 100.0 0.0 X-RAY
 2017-01-11 GLN A:20 A:94 91.0 0.506 S -97.6 160.2 91.0 0.506 0.0 HOH
 3.287
 NE2
 O
GLN B:20 B:94 92.0 0.511 S -102.8 160.0 NA NA NA
5u62 1 O75530 100.0 0.0 X-RAY
 2017-01-11 GLN A:20 A:94 94.0 0.522 -98.2 159.0 94.0 0.522 0.0 HOH
 3.313
 NE2
 O
GLN B:20 B:94 90.0 0.5 -100.6 153.7 NA NA NA
6lo2 1 O75530 100.0 0.0 X-RAY
 2021-07-07 GLN A:20 A:94 93.0 0.517 -92.2 153.8 93.0 0.517 0.0 EJU
HOH
 7.494
5.457
 NE2
NE2
 C18
O
GLN B:20 B:94 88.0 0.489 -96.1 156.2 NA NA NA
6v3x 1 O75530 100.0 0.0 X-RAY
 2021-05-26 GLN A:20 A:94 94.0 0.522 S -103.0 160.5 94.0 0.522 0.0 HOH
 3.713
 CB
 O
4x3e 1 O75530 100.0 0.0 X-RAY
 2015-01-21 GLN A:20 A:94 93.0 0.517 S -103.1 166.2 93.0 0.517 0.0 HOH
 3.668
 CB
 O
5hyn 2 O75530 100.0 0.0 X-RAY
 2016-05-11 GLN B:20 B:94 98.0 0.544 -81.9 155.4 98.0 0.544 0.0
GLN G:20 G:94 94.0 0.522 S -82.1 158.6 NA NA NA
GLN L:20 L:94 95.0 0.528 S -89.3 156.1 NA NA NA
GLN Q:20 R:94 92.0 0.511 S -89.0 157.4 NA NA NA
5ls6 2 O75530 100.0 0.0 X-RAY
 2017-02-22 GLN B:20 B:94 99.0 0.55 S -62.7 165.4 99.0 0.55 0.0
GLN E:20 E:94 95.0 0.528 S -72.2 161.1 NA NA NA
GLN H:20 H:94 96.0 0.533 S -87.0 147.5 NA NA NA
GLN K:20 K:94 100.0 0.556 S -73.2 156.1 NA NA NA
5u69 1 O75530 100.0 0.0 X-RAY
 2017-03-15 GLN A:22 A:94 95.0 0.528 S -103.9 163.5 95.0 0.528 0.0 LQD
HOH
 7.961
2.982
 OE1
OE1
 C15
O
5u6d 1 O75530 100.0 0.0 X-RAY
 2017-03-15 GLN A:22 A:94 97.0 0.539 S -108.6 165.1 97.0 0.539 0.0 7XG
HOH
 5.440
3.656
 OE1
CB
 O31
O
5u8a 1 O75530 100.0 0.0 X-RAY
 2017-03-15 GLN A:22 A:94 98.0 0.544 S -102.6 164.6 98.0 0.544 0.0 82D
HOH
 7.604
3.669
 OE1
CB
 C1
O
5u8f 1 O75530 100.0 0.0 X-RAY
 2017-03-15 GLN A:22 A:94 96.0 0.533 S -100.9 163.2 96.0 0.533 0.0 82G
HOH
 7.700
3.654
 OE1
CB
 C22
O
3iiw 1 O75530 100.0 0.0 X-RAY
 2009-09-15 GLN A:18 A:94 97.0 0.539 S -100.0 165.1 97.0 0.539 0.0 HOH
 3.609
 CB
 O
5k0m 1 O75530 100.0 0.0 X-RAY
 2017-01-25 GLN A:25 A:94 93.0 0.517 S -105.8 162.2 93.0 0.517 0.0 6PU
HOH
 5.910
3.720
 OE1
CB
 O
O
5wuk 1 O75530 99.73 0.0 X-RAY
 2017-05-03 GLN A:19 A:94 92.0 0.511 -97.1 158.3 92.0 0.511 0.0 73K
HOH
 6.508
3.710
 NE2
CB
 O24
O
6u4y 2 O75530 100.0 0.0 X-RAY
 2020-07-08 GLN D:19 D:94 96.0 0.533 -102.3 152.8 85.0 0.472 0.061 F:O75530:0.061
GLN E:19 E:94 91.0 0.506 -112.1 153.0 79.0 0.439 0.067 D:O75530:0.067
GLN F:19 F:94 90.0 0.5 -122.5 149.8 81.0 0.45 0.05 E:O75530:0.05
6w7f 1 O75530 99.73 0.0 X-RAY
 2020-07-08 GLN A:21 A:94 93.0 0.517 -91.0 160.0 93.0 0.517 0.0 Q3D
HOH
 6.546
3.816
 C
CB
 H16
O
6w7g 1 O75530 99.73 0.0 X-RAY
 2020-07-08 GLN A:21 A:94 102.0 0.567 S -101.1 163.0 102.0 0.567 0.0 Q3A
HOH
 5.521
2.900
 NE2
NE2
 H2
O
7msb 1 O75530 99.73 0.0 X-RAY
 2021-10-20 GLN A:21 A:94 99.0 0.55 S -100.4 162.5 99.0 0.55 0.0 ZNG
HOH
 6.883
2.807
 NE2
NE2
 F2
O
7msd 1 O75530 99.73 0.0 X-RAY
 2021-10-20 GLN A:21 A:94 95.0 0.528 S -87.4 160.8 95.0 0.528 0.0 ZMY
HOH
 7.024
3.492
 C
NE2
 F3
O
3iiy 1 O75530 99.73 0.0 X-RAY
 2009-09-15 GLN A:18 A:94 92.0 0.511 S -97.9 161.5 92.0 0.511 0.0 HOH
 3.718
 CB
 O
3ij0 1 O75530 99.73 0.0 X-RAY
 2009-09-15 GLN A:18 A:94 92.0 0.511 S -93.9 161.9 92.0 0.511 0.0 HOH
 3.514
 CB
 O
3ij1 1 O75530 99.73 0.0 X-RAY
 2009-09-15 GLN A:18 A:94 96.0 0.533 S -97.5 162.3 96.0 0.533 0.0 HOH
 3.492
 CG
 O
3ijc 1 O75530 99.73 0.0 X-RAY
 2009-09-15 GLN A:18 A:94 98.0 0.544 S -99.5 160.7 98.0 0.544 0.0 NDS
HOH
 9.512
2.636
 C
NE2
 O1
O
2qxv 1 Q921E6 100.0 0.0 X-RAY
 2007-08-28 GLN A:14 A:93 91.0 0.506 -87.7 152.7 91.0 0.506 0.0 HOH
 3.621
 NE2
 O
4w2r 2 O75530 100.0 0.0 X-RAY
 2017-12-27 GLN C:15 E:80 91.0 0.506 -97.6 154.1 NA NA NA
GLN D:15 F:80 89.0 0.494 -105.6 156.2 89.0 0.494 0.0
5ij7 2 O75530 100.0 0.0 X-RAY
 2016-05-04 GLN C:15 E:80 91.0 0.506 S -101.1 159.3 91.0 0.506 0.0 HOH
 3.890
 CB
 O
GLN D:15 F:80 96.0 0.533 S -107.8 165.9 NA NA NA
5ij8 2 O75530 100.0 0.0 X-RAY
 2016-05-04 GLN C:15 E:80 94.0 0.522 S -112.1 157.8 NA NA NA
GLN D:15 F:80 94.0 0.522 S -111.9 158.3 94.0 0.522 0.0
6b3w 2 O75530 100.0 0.0 X-RAY
 2017-12-27 GLN C:15 E:80 92.0 0.511 -88.5 150.7 NA NA NA
GLN D:15 F:80 89.0 0.494 -95.7 149.9 89.0 0.494 0.0
6v3y 1 O75530 100.0 0.0 X-RAY
 2021-05-26 GLN A:14 A:94 97.0 0.539 S -102.5 164.3 97.0 0.539 0.0 HOH
 3.712
 CB
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o75530-f1 1 O75530 100.0 0.0 GLN A:94 A:94 95.0 0.528 -104.1 156.7