Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr11 61069768 . T A CCDS31576.1:NM_001923.4:c.3176aAt>aTt_NP_001914.3:p.1059N>I Homo sapiens damage specific DNA binding protein 1 (DDB1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3e0c 1 Q16531 100.0 0.0 X-RAY
 2008-09-16 ASN A:1059 A:1059 36.0 0.225 H -62.7 -36.2 36.0 0.225 0.0 HOH
 2.851
 O
 O
5hxb 2 Q16531 100.0 0.0 X-RAY
 2016-06-29 ASN B:1059 Y:1059 26.0 0.163 H -66.4 -35.2 26.0 0.163 0.0
ASN D:1059 B:1059 23.0 0.144 H -66.4 -34.9 NA NA NA
5jk7 1 Q16531 100.0 0.0 X-RAY
 2016-10-05 ASN A:1059 A:1059 25.0 0.156 H -52.3 -38.7 25.0 0.156 0.0
ASN B:1059 B:1059 21.0 0.131 H -51.8 -39.8 NA NA NA
5v3o 1 Q16531 100.0 0.0 X-RAY
 2017-05-03 ASN A:1059 A:1059 44.0 0.275 H -62.7 -26.6 44.0 0.275 0.0
6dsz 1 Q16531 100.0 0.0 X-RAY
 2018-12-12 ASN A:1059 A:1059 32.0 0.2 S -62.1 -32.0 32.0 0.2 0.0
ASN B:1059 B:1059 30.0 0.188 G -59.0 -36.9 NA NA NA
6pai 1 Q16531 100.0 0.0 X-RAY
 2019-09-18 ASN A:1059 A:1059 45.0 0.281 H -72.9 -23.9 45.0 0.281 0.0
6sj7 2 Q16531 100.0 0.0 EM
 2019-12-18 ASN B:1059 B:1059 52.0 0.325 T -71.2 -22.4 52.0 0.325 0.0
6uml 1 Q16531 100.0 0.0 X-RAY
 2020-04-15 ASN A:1059 A:1059 42.0 0.263 H -70.9 -34.5 42.0 0.263 0.0
6xk9 2 Q16531 100.0 0.0 X-RAY
 2020-12-02 ASN B:1059 Y:1059 35.0 0.219 H -64.4 -30.6 35.0 0.219 0.0
ASN E:1059 B:1059 33.0 0.206 H -64.8 -30.2 NA NA NA
7lps 1 Q16531 100.0 0.0 X-RAY
 2021-06-02 ASN A:1059 A:1059 45.0 0.281 H -60.5 -30.4 45.0 0.281 0.0
ASN D:1059 D:1059 43.0 0.269 H -60.5 -30.4 NA NA NA
ASN G:1059 G:1059 36.0 0.225 H -60.4 -30.8 NA NA NA
ASN J:1059 J:1059 36.0 0.225 H -60.6 -30.4 NA NA NA
7oop 26 Q16531 100.0 0.0 EM
 2021-10-06 ASN Z:1059 d:1059 51.0 0.319 H -59.3 -38.0 51.0 0.319 0.0
6zue 1 Q16531 100.0 0.0 X-RAY
 2021-07-28 ASN A:1061 A:1059 26.0 0.163 H -67.1 -22.3 26.0 0.163 0.0
6zx9 1 Q16531 100.0 0.0 X-RAY
 2021-07-21 ASN A:1061 A:1059 40.0 0.25 H -71.6 -29.5 40.0 0.25 0.0 GOL
HOH
 7.789
3.553
 OD1
ND2
 O2
O
7oo3 20 Q16531 100.0 0.0 EM
 2021-10-06 ASN T:1062 d:1059 47.0 0.294 H -60.1 -36.9 47.0 0.294 0.0
7oob 14 Q16531 100.0 0.0 EM
 2021-10-13 ASN N:1062 d:1059 29.0 0.181 H -60.2 -36.0 29.0 0.181 0.0
7opc 26 Q16531 100.0 0.0 EM
 2021-10-13 ASN Z:1062 d:1059 30.0 0.188 H -60.0 -35.5 30.0 0.188 0.0
7opd 26 Q16531 100.0 0.0 EM
 2021-10-06 ASN Z:1062 d:1059 30.0 0.188 H -60.1 -35.4 30.0 0.188 0.0
4a0l 1 Q16531 100.0 0.0 X-RAY
 2011-12-14 ASN A:1063 A:1059 26.0 0.163 H -71.1 -18.5 26.0 0.163 0.0
ASN C:1063 C:1059 28.0 0.175 H -71.3 -18.6 NA NA NA
6r8y 8 Q16531 100.0 0.0 EM
 2019-06-12 ASN K:1063 K:1059 39.0 0.244 H -63.5 -29.7 39.0 0.244 0.0
6r8z 7 Q16531 100.0 0.0 EM
 2019-06-12 ASN K:1082 K:1059 51.0 0.319 H -61.7 -26.6 51.0 0.319 0.0
6r90 7 Q16531 100.0 0.0 EM
 2019-06-12 ASN K:1082 K:1059 28.0 0.175 H -62.8 -25.3 28.0 0.175 0.0
6r91 7 Q16531 100.0 0.0 EM
 2019-06-12 ASN K:1082 K:1059 42.0 0.263 H -64.9 -23.6 42.0 0.263 0.0
6r92 8 Q16531 100.0 0.0 EM
 2019-06-12 ASN L:1082 K:1059 39.0 0.244 H -64.6 -23.5 39.0 0.244 0.0
4a0k 3 Q16531 100.0 0.0 X-RAY
 2011-12-14 ASN C:1078 C:1059 27.0 0.169 H -71.1 -18.4 27.0 0.169 0.0
4a11 1 Q16531 100.0 0.0 X-RAY
 2011-12-07 ASN A:1078 A:1059 37.0 0.231 H -53.8 -51.3 37.0 0.231 0.0
7okq 1 Q16531 100.0 0.0 EM
 2021-10-13 ASN A:1078 A:1059 51.0 NA H -62.1 -41.3 47.0 NA NA K:Q13619:NA
ASN E:1078 E:1059 58.0 NA H -73.0 -6.3 NA NA NA
ASN I:1078 I:1059 58.0 NA H -72.9 -6.4 NA NA NA
ASN M:1078 M:1059 57.0 NA H -73.0 -6.4 NA NA NA
3ei1 1 Q16531 100.0 0.0 X-RAY
 2009-01-20 ASN A:1077 A:1059 33.0 0.206 H -68.2 -27.5 33.0 0.206 0.0 HOH
 5.830
 O
 O
3ei2 1 Q16531 100.0 0.0 X-RAY
 2009-01-20 ASN A:1077 A:1059 27.0 0.169 H -71.3 -18.4 27.0 0.169 0.0 HOH
 2.756
 OD1
 O
3ei3 1 Q16531 100.0 0.0 X-RAY
 2009-01-20 ASN A:1077 A:1059 33.0 0.206 H -65.0 -26.5 33.0 0.206 0.0 HOH
 2.693
 O
 O
4ci1 1 Q16531 100.0 0.0 X-RAY
 2014-07-16 ASN A:1077 A:1059 39.0 0.244 H -70.6 -12.8 39.0 0.244 0.0 HOH
 3.187
 O
 O
4ci2 1 Q16531 100.0 0.0 X-RAY
 2014-07-16 ASN A:1077 A:1059 32.0 0.2 H -74.5 -20.6 32.0 0.2 0.0
4ci3 1 Q16531 100.0 0.0 X-RAY
 2014-07-16 ASN A:1077 A:1059 37.0 0.231 H -70.3 -12.3 37.0 0.231 0.0
6fcv 1 Q16531 100.0 0.0 X-RAY
 2019-01-30 ASN A:1077 A:1059 44.0 0.275 H -62.4 -20.3 44.0 0.275 0.0
4tz4 1 Q16531 100.0 0.0 X-RAY
 2014-08-06 ASN A:1058 A:1059 33.0 0.206 H -66.4 -34.4 33.0 0.206 0.0 HOH
 9.115
 OD1
 O
3i7h 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ASN A:1062 A:1059 36.0 0.225 H -62.7 -42.5 36.0 0.225 0.0
3i7k 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ASN A:1062 A:1059 43.0 0.269 H -63.1 -45.9 43.0 0.269 0.0
3i7l 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ASN A:1062 A:1059 42.0 0.263 H -57.5 -41.7 42.0 0.263 0.0
3i7n 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ASN A:1062 A:1059 28.0 0.175 H -75.2 -35.6 28.0 0.175 0.0
3i7o 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ASN A:1062 A:1059 28.0 0.175 H -83.8 -29.1 28.0 0.175 0.0
3i7p 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ASN A:1062 A:1059 28.0 0.175 H -75.6 -62.3 28.0 0.175 0.0
3i89 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ASN A:1062 A:1059 34.0 0.212 H -67.0 -47.0 34.0 0.212 0.0
3i8c 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ASN A:1062 A:1059 39.0 0.244 H -74.9 -36.5 39.0 0.244 0.0
3i8e 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ASN A:1062 A:1059 47.0 0.294 H -62.6 -40.8 47.0 0.294 0.0
ASN B:1062 B:1059 35.0 0.219 H -86.4 -39.4 NA NA NA
2b5l 1 13435359 99.74 0.0 X-RAY
 2006-02-28 ASN A:1059 A:1059 43.0 0.269 H -61.6 -24.6 43.0 0.269 0.0
ASN B:1059 B:1059 44.0 0.275 H -69.9 -20.3 NA NA NA
2b5m 1 13435359 99.74 0.0 X-RAY
 2006-02-28 ASN A:1059 A:1059 35.0 0.219 H -88.8 -46.8 35.0 0.219 0.0
2hye 1 Q16531 99.74 0.0 X-RAY
 2006-10-03 ASN A:1059 A:1059 23.0 0.144 H -66.0 -19.2 23.0 0.144 0.0
4a0b 1 Q16531 99.91 0.0 X-RAY
 2011-11-30 ASN A:1078 A:1059 32.0 0.2 H -76.7 -29.1 32.0 0.2 0.0
ASN C:1078 C:1059 13.0 0.081 H -82.5 -13.0 NA NA NA
4a0a 1 Q16531 99.91 0.0 X-RAY
 2011-11-30 ASN A:1078 A:1059 33.0 0.206 H -54.6 -45.3 33.0 0.206 0.0
4a08 1 Q16531 99.91 0.0 X-RAY
 2011-11-30 ASN A:1078 A:1059 28.0 0.175 H -67.5 -26.1 28.0 0.175 0.0 HOH
 2.896
 O
 O
4a09 1 Q16531 99.91 0.0 X-RAY
 2011-11-30 ASN A:1078 A:1059 32.0 0.2 H -68.9 -21.6 32.0 0.2 0.0 HOH
 3.264
 O
 O
4e54 1 Q16531 100.0 0.0 X-RAY
 2012-08-08 ASN A:1069 A:1059 49.0 0.306 T -70.0 -17.3 49.0 0.306 0.0
4e5z 1 Q16531 100.0 0.0 X-RAY
 2012-08-22 ASN A:1069 A:1059 38.0 0.237 T -70.1 3.4 38.0 0.237 0.0
3ei4 1 Q16531 99.74 0.0 X-RAY
 2009-01-20 ASN A:1077 A:1059 43.0 0.269 H -68.6 -32.0 43.0 0.269 0.0
ASN C:1077 C:1059 46.0 0.287 H -68.3 -32.6 NA NA NA
ASN E:1077 E:1059 45.0 0.281 H -69.9 -31.6 NA NA NA
6ud7 2 Q16531 100.0 0.0 X-RAY
 2019-12-18 ASN B:755 B:1059 35.0 0.219 H -72.9 -20.4 35.0 0.219 0.0 HOH
 3.323
 CB
 O
6ue5 2 Q16531 100.0 0.0 X-RAY
 2019-12-18 ASN B:755 B:1059 34.0 0.212 T -73.8 -17.5 34.0 0.212 0.0 HOH
 3.305
 OD1
 O
6td3 1 Q16531 100.0 0.0 X-RAY
 2020-06-17 ASN A:759 A:1059 32.0 0.2 H -62.5 -37.4 32.0 0.2 0.0
ASN D:759 D:1059 33.0 0.206 H -62.5 -37.4 NA NA NA
ASN G:759 G:1059 32.0 0.2 H -62.4 -36.9 NA NA NA
5fqd 1 Q16531 100.0 0.0 X-RAY
 2016-02-24 ASN A:775 A:1059 45.0 0.281 H -66.3 -26.8 45.0 0.281 0.0 HOH
 8.891
 OD1
 O
ASN D:775 D:1059 43.0 0.269 H -66.7 -26.7 NA NA NA
6h0f 1 ? 100.0 0.0 X-RAY
 2018-11-07 ASN A:775 A:1059 36.0 0.225 H -60.5 -32.4 36.0 0.225 0.0 HOH
 6.691
 OD1
 O
ASN D:775 D:1059 30.0 0.188 H -58.0 -32.5 NA NA NA
ASN G:775 G:1059 27.0 0.169 H -58.7 -32.4 NA NA NA
ASN J:775 J:1059 30.0 0.188 H -57.6 -32.5 NA NA NA
6h0g 1 Q16531 100.0 0.0 X-RAY
 2018-11-07 ASN A:775 A:1059 24.0 0.15 H -61.4 -28.7 24.0 0.15 0.0
ASN D:775 D:1059 27.0 0.169 H -61.7 -28.2 NA NA NA
6bn7 1 Q16531 100.0 0.0 X-RAY
 2018-05-30 ASN A:783 A:1059 38.0 0.237 H -63.1 -35.5 38.0 0.237 0.0
6bn8 1 Q16531 100.0 0.0 X-RAY
 2018-06-06 ASN A:783 A:1059 43.0 0.269 H -66.4 -23.8 43.0 0.269 0.0
6bn9 1 Q16531 100.0 0.0 X-RAY
 2018-05-30 ASN A:783 A:1059 43.0 0.269 H -64.2 -36.6 43.0 0.269 0.0
6bnb 1 Q16531 100.0 0.0 X-RAY
 2018-05-30 ASN A:783 A:1059 43.0 0.269 H -65.5 -34.7 43.0 0.269 0.0
6boy 1 Q16531 100.0 0.0 X-RAY
 2018-05-30 ASN A:783 A:1059 39.0 0.244 H -63.8 -29.9 39.0 0.244 0.0
6q0r 1 Q16531 100.0 0.0 X-RAY
 2019-11-13 ASN A:783 A:1059 34.0 0.212 H -64.5 -26.1 34.0 0.212 0.0
6q0v 1 Q16531 100.0 0.0 X-RAY
 2019-11-13 ASN A:783 A:1059 41.0 0.256 H -62.3 -25.1 41.0 0.256 0.0
6q0w 1 Q16531 100.0 0.0 X-RAY
 2019-11-13 ASN A:783 A:1059 36.0 0.225 H -62.2 -23.7 36.0 0.225 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q16531-f1 1 Q16531 100.0 0.0 ASN A:1059 A:1059 45.0 0.281 H -57.8 -27.0