Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr11 | 61079317 | . | C | A | CCDS31576.1:NM_001923.4:c.2216cGc>cTc_NP_001914.3:p.739R>L | Homo sapiens damage specific DNA binding protein 1 (DDB1), mRNA. |
|---|---|---|---|---|---|---|---|
|
|
|
|
|
PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 3e0c | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2008-09-16 | ARG | A:739 | A:739 | 21.0 | 0.093 | E | -117.6 | 151.8 | 21.0 | 0.093 | 0.0 |
HOH |
3.464 |
CA |
O |
||
| 5hxb | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-06-29 | ARG | B:739 | Y:739 | 19.0 | 0.084 | E | -141.5 | 160.0 | 19.0 | 0.084 | 0.0 | ||||||
| ARG | D:739 | B:739 | 20.0 | 0.089 | E | -141.4 | 160.5 | NA | NA | NA | |||||||||||||
| 5jk7 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-10-05 | ARG | A:739 | A:739 | 19.0 | 0.084 | E | -115.9 | 147.3 | 19.0 | 0.084 | 0.0 | ||||||
| ARG | B:739 | B:739 | 20.0 | 0.089 | E | -116.0 | 147.8 | NA | NA | NA | |||||||||||||
| 5v3o | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2017-05-03 | ARG | A:739 | A:739 | 23.0 | 0.102 | E | -106.2 | 151.6 | 23.0 | 0.102 | 0.0 | ||||||
| 6dsz | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-12-12 | ARG | A:739 | A:739 | 24.0 | 0.107 | E | -124.2 | 167.5 | 24.0 | 0.107 | 0.0 | ||||||
| ARG | B:739 | B:739 | 22.0 | 0.098 | E | -126.2 | 170.1 | NA | NA | NA | |||||||||||||
| 6pai | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-09-18 | ARG | A:739 | A:739 | 21.0 | 0.093 | E | -119.8 | 148.6 | 21.0 | 0.093 | 0.0 | ||||||
| 6sj7 | 2 | Q16531 | 100.0 | 0.0 |
EM |
2019-12-18 | ARG | B:739 | B:739 | 34.0 | 0.151 | E | -96.8 | 147.8 | 34.0 | 0.151 | 0.0 | ||||||
| 6uml | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-04-15 | ARG | A:739 | A:739 | 19.0 | 0.084 | E | -104.4 | 161.4 | 19.0 | 0.084 | 0.0 | ||||||
| 6xk9 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-12-02 | ARG | B:739 | Y:739 | 25.0 | 0.111 | E | -113.6 | 159.7 | 25.0 | 0.111 | 0.0 | ||||||
| ARG | E:739 | B:739 | 24.0 | 0.107 | E | -114.4 | 158.7 | NA | NA | NA | |||||||||||||
| 7lps | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-06-02 | ARG | A:739 | A:739 | 22.0 | 0.098 | E | -105.3 | 161.9 | 22.0 | 0.098 | 0.0 | ||||||
| ARG | D:739 | D:739 | 22.0 | 0.098 | E | -106.3 | 162.9 | NA | NA | NA | |||||||||||||
| ARG | G:739 | G:739 | 24.0 | 0.107 | E | -108.5 | 157.7 | NA | NA | NA | |||||||||||||
| ARG | J:739 | J:739 | 24.0 | 0.107 | E | -109.1 | 158.1 | NA | NA | NA | |||||||||||||
| 7oop | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | ARG | Z:739 | d:739 | 22.0 | 0.098 | E | -122.7 | 154.9 | 22.0 | 0.098 | 0.0 | ||||||
| 6zue | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-07-28 | ARG | A:741 | A:739 | 24.0 | 0.107 | E | -119.3 | 151.5 | 24.0 | 0.107 | 0.0 | ||||||
| 6zx9 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-07-21 | ARG | A:741 | A:739 | 24.0 | 0.107 | E | -123.8 | 155.9 | 24.0 | 0.107 | 0.0 |
HOH |
3.337 |
CD |
O |
||
| 7oo3 | 20 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | ARG | T:742 | d:739 | 21.0 | 0.093 | E | -122.7 | 151.0 | 21.0 | 0.093 | 0.0 | ||||||
| 7oob | 14 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | ARG | N:742 | d:739 | 20.0 | 0.089 | E | -126.5 | 149.5 | 20.0 | 0.089 | 0.0 | ||||||
| 7opc | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | ARG | Z:742 | d:739 | 21.0 | 0.093 | E | -126.0 | 149.6 | 21.0 | 0.093 | 0.0 | ||||||
| 7opd | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | ARG | Z:742 | d:739 | 21.0 | 0.093 | E | -126.0 | 149.5 | 21.0 | 0.093 | 0.0 | ||||||
| 4a0l | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-14 | ARG | A:743 | A:739 | 29.0 | 0.129 | E | -122.0 | 153.3 | 29.0 | 0.129 | 0.0 | ||||||
| ARG | C:743 | C:739 | 28.0 | 0.124 | E | -122.0 | 153.1 | NA | NA | NA | |||||||||||||
| 6r8y | 8 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ARG | K:743 | K:739 | 26.0 | 0.116 | E | -127.5 | 160.6 | 26.0 | 0.116 | 0.0 | ||||||
| 6r8z | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ARG | K:762 | K:739 | 27.0 | 0.12 | E | -130.7 | 154.8 | 27.0 | 0.12 | 0.0 | ||||||
| 6r90 | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ARG | K:762 | K:739 | 23.0 | 0.102 | E | -121.2 | 164.8 | 23.0 | 0.102 | 0.0 | ||||||
| 6r91 | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ARG | K:762 | K:739 | 26.0 | 0.116 | E | -130.2 | 152.8 | 26.0 | 0.116 | 0.0 | ||||||
| 6r92 | 8 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ARG | L:762 | K:739 | 24.0 | 0.107 | E | -130.3 | 153.1 | 24.0 | 0.107 | 0.0 | ||||||
| 4a0k | 3 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-14 | ARG | C:758 | C:739 | 29.0 | 0.129 | E | -121.9 | 153.2 | 29.0 | 0.129 | 0.0 | ||||||
| 4a11 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-07 | ARG | A:758 | A:739 | 20.0 | 0.089 | E | -105.5 | 147.5 | 20.0 | 0.089 | 0.0 | ||||||
| 7okq | 1 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | ARG | A:758 | A:739 | 31.0 | NA | E | -116.8 | 129.8 | 31.0 | NA | NA | ||||||
| ARG | E:758 | E:739 | 31.0 | NA | E | -108.2 | 157.9 | NA | NA | NA | |||||||||||||
| ARG | I:758 | I:739 | 31.0 | NA | E | -108.2 | 157.9 | NA | NA | NA | |||||||||||||
| ARG | M:758 | M:739 | 32.0 | NA | E | -108.2 | 157.9 | NA | NA | NA | |||||||||||||
| 3ei1 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | ARG | A:757 | A:739 | 28.0 | 0.124 | E | -118.3 | 154.9 | 28.0 | 0.124 | 0.0 |
HOH |
3.353 |
CD |
O |
||
| 3ei2 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | ARG | A:757 | A:739 | 28.0 | 0.124 | E | -121.9 | 153.1 | 28.0 | 0.124 | 0.0 |
HOH |
3.467 |
CA |
O |
||
| 3ei3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | ARG | A:757 | A:739 | 25.0 | 0.111 | E | -130.5 | 152.2 | 25.0 | 0.111 | 0.0 |
HOH |
3.517 |
CA |
O |
||
| 4ci1 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | ARG | A:757 | A:739 | 24.0 | 0.107 | E | -123.7 | 140.7 | 24.0 | 0.107 | 0.0 |
HOH |
9.430 |
N |
O |
||
| 4ci2 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | ARG | A:757 | A:739 | 22.0 | 0.098 | E | -123.3 | 139.2 | 22.0 | 0.098 | 0.0 | ||||||
| 4ci3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | ARG | A:757 | A:739 | 25.0 | 0.111 | E | -124.2 | 140.3 | 25.0 | 0.111 | 0.0 | ||||||
| 6fcv | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-01-30 | ARG | A:757 | A:739 | 20.0 | 0.089 | E | -98.0 | 143.7 | 20.0 | 0.089 | 0.0 | ||||||
| 4tz4 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-08-06 | ARG | A:738 | A:739 | 22.0 | 0.098 | E | -137.5 | 155.4 | 22.0 | 0.098 | 0.0 | ||||||
| 3i7h | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ARG | A:742 | A:739 | 23.0 | 0.102 | E | -139.7 | 156.3 | 23.0 | 0.102 | 0.0 | ||||||
| 3i7k | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ARG | A:742 | A:739 | 25.0 | 0.111 | E | -135.7 | 158.9 | 25.0 | 0.111 | 0.0 | ||||||
| 3i7l | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ARG | A:742 | A:739 | 22.0 | 0.098 | E | -126.0 | 149.8 | 22.0 | 0.098 | 0.0 | ||||||
| 3i7n | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ARG | A:742 | A:739 | 29.0 | 0.129 | E | -121.6 | 150.6 | 29.0 | 0.129 | 0.0 | ||||||
| 3i7o | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ARG | A:742 | A:739 | 25.0 | 0.111 | E | -119.4 | 174.1 | 25.0 | 0.111 | 0.0 | ||||||
| 3i7p | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ARG | A:742 | A:739 | 20.0 | 0.089 | E | -129.7 | 152.4 | 20.0 | 0.089 | 0.0 | ||||||
| 3i89 | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ARG | A:742 | A:739 | 24.0 | 0.107 | E | -124.4 | 157.9 | 24.0 | 0.107 | 0.0 | ||||||
| 3i8c | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ARG | A:742 | A:739 | 26.0 | 0.116 | E | -128.8 | 154.2 | 26.0 | 0.116 | 0.0 | ||||||
| 3i8e | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ARG | A:742 | A:739 | 27.0 | 0.12 | E | -116.2 | 145.2 | 27.0 | 0.12 | 0.0 | ||||||
| ARG | B:742 | B:739 | 27.0 | 0.12 | E | -82.2 | 152.4 | NA | NA | NA | |||||||||||||
| 2b5l | 1 | 13435359 | 99.74 | 0.0 |
X-RAY |
2006-02-28 | ARG | A:739 | A:739 | 26.0 | 0.116 | E | -135.5 | 156.7 | 26.0 | 0.116 | 0.0 | ||||||
| ARG | B:739 | B:739 | 17.0 | 0.076 | E | -121.1 | 153.9 | NA | NA | NA | |||||||||||||
| 2b5m | 1 | 13435359 | 99.74 | 0.0 |
X-RAY |
2006-02-28 | ARG | A:739 | A:739 | 21.0 | 0.093 | E | -134.6 | 160.3 | 21.0 | 0.093 | 0.0 | ||||||
| 2hye | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2006-10-03 | ARG | A:739 | A:739 | 23.0 | 0.102 | E | -117.0 | 156.4 | 23.0 | 0.102 | 0.0 | ||||||
| 4a0b | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | ARG | A:758 | A:739 | 24.0 | 0.107 | E | -109.3 | 171.0 | 24.0 | 0.107 | 0.0 | ||||||
| ARG | C:758 | C:739 | 20.0 | 0.089 | E | -98.1 | -177.5 | NA | NA | NA | |||||||||||||
| 4a0a | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | ARG | A:758 | A:739 | 18.0 | 0.08 | E | -112.8 | 167.2 | 18.0 | 0.08 | 0.0 | ||||||
| 4a08 | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | ARG | A:758 | A:739 | 30.0 | 0.133 | E | -114.6 | 151.3 | 30.0 | 0.133 | 0.0 |
HOH |
9.339 |
N |
O |
||
| 4a09 | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | ARG | A:758 | A:739 | 26.0 | 0.116 | E | -119.1 | 146.4 | 26.0 | 0.116 | 0.0 |
HOH |
8.530 |
C |
O |
||
| 4e54 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2012-08-08 | ARG | A:749 | A:739 | 26.0 | 0.116 | E | -122.7 | 152.8 | 26.0 | 0.116 | 0.0 | ||||||
| 4e5z | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2012-08-22 | ARG | A:749 | A:739 | 35.0 | 0.156 | E | -131.5 | 152.5 | 35.0 | 0.156 | 0.0 | ||||||
| 3ei4 | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-01-20 | ARG | A:757 | A:739 | 27.0 | 0.12 | -121.0 | 137.0 | 27.0 | 0.12 | 0.0 | |||||||
| ARG | C:757 | C:739 | 28.0 | 0.124 | -121.8 | 136.2 | NA | NA | NA | ||||||||||||||
| ARG | E:757 | E:739 | 26.0 | 0.116 | -120.1 | 136.8 | NA | NA | NA | ||||||||||||||
| 6ud7 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-12-18 | ARG | B:435 | B:739 | 23.0 | 0.102 | E | -125.1 | 142.9 | 23.0 | 0.102 | 0.0 |
HOH |
3.756 |
NH2 |
O |
||
| 6ue5 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-12-18 | ARG | B:435 | B:739 | 21.0 | 0.093 | E | -113.3 | 146.8 | 21.0 | 0.093 | 0.0 |
HOH |
3.807 |
N |
O |
||
| 6td3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-06-17 | ARG | A:439 | A:739 | 21.0 | 0.093 | E | -123.4 | 145.1 | 21.0 | 0.093 | 0.0 | ||||||
| ARG | D:439 | D:739 | 20.0 | 0.089 | E | -123.7 | 144.6 | NA | NA | NA | |||||||||||||
| ARG | G:439 | G:739 | 24.0 | 0.107 | E | -124.3 | 145.0 | NA | NA | NA | |||||||||||||
| 5fqd | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-02-24 | ARG | A:455 | A:739 | 20.0 | 0.089 | E | -135.9 | 152.0 | 20.0 | 0.089 | 0.0 |
HOH |
3.903 |
NH1 |
O |
||
| ARG | D:455 | D:739 | 22.0 | 0.098 | E | -134.6 | 152.9 | NA | NA | NA | |||||||||||||
| 6h0f | 1 | ? | 100.0 | 0.0 |
X-RAY |
2018-11-07 | ARG | A:455 | A:739 | 25.0 | 0.111 | E | -121.4 | 142.4 | 25.0 | 0.111 | 0.0 | ||||||
| ARG | D:455 | D:739 | 25.0 | 0.111 | E | -123.1 | 142.1 | NA | NA | NA | |||||||||||||
| ARG | G:455 | G:739 | 25.0 | 0.111 | E | -121.6 | 142.6 | NA | NA | NA | |||||||||||||
| ARG | J:455 | J:739 | 23.0 | 0.102 | E | -122.0 | 142.6 | NA | NA | NA | |||||||||||||
| 6h0g | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-11-07 | ARG | A:455 | A:739 | 19.0 | 0.084 | E | -106.3 | 165.4 | 19.0 | 0.084 | 0.0 | ||||||
| ARG | D:455 | D:739 | 17.0 | 0.076 | E | -106.2 | 165.4 | NA | NA | NA | |||||||||||||
| 6bn7 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | ARG | A:463 | A:739 | 25.0 | 0.111 | E | -131.0 | 151.2 | 25.0 | 0.111 | 0.0 | ||||||
| 6bn8 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-06-06 | ARG | A:463 | A:739 | 26.0 | 0.116 | E | -118.7 | 156.9 | 26.0 | 0.116 | 0.0 | ||||||
| 6bn9 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | ARG | A:463 | A:739 | 23.0 | 0.102 | E | -125.3 | 165.6 | 23.0 | 0.102 | 0.0 | ||||||
| 6bnb | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | ARG | A:463 | A:739 | 15.0 | 0.067 | E | -108.6 | 149.9 | 15.0 | 0.067 | 0.0 | ||||||
| 6boy | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | ARG | A:463 | A:739 | 24.0 | 0.107 | E | -126.6 | 149.2 | 24.0 | 0.107 | 0.0 | ||||||
| 6q0r | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-11-13 | ARG | A:463 | A:739 | 19.0 | 0.084 | E | -128.3 | 145.5 | 19.0 | 0.084 | 0.0 | ||||||
| 6q0v | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-11-13 | ARG | A:463 | A:739 | 15.0 | 0.067 | E | -125.9 | 149.5 | 15.0 | 0.067 | 0.0 | ||||||
| 6q0w | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-11-13 | ARG | A:463 | A:739 | 18.0 | 0.08 | E | -127.6 | 148.6 | 18.0 | 0.08 | 0.0 | ||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-q16531-f1 | 1 | Q16531 | 100.0 | 0.0 | ARG | A:739 | A:739 | 19.0 | 0.084 | E | -121.7 | 158.5 | |