Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr11 | 61083980 | . | A | C | CCDS31576.1:NM_001923.4:c.1285Ttt>Gtt_NP_001914.3:p.429F>V | Homo sapiens damage specific DNA binding protein 1 (DDB1), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 3e0c | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2008-09-16 | PHE | A:429 | A:429 | 9.0 | 0.043 | E | -141.5 | 170.9 | 9.0 | 0.043 | 0.0 |
HOH |
4.700 |
CD2 |
O |
||
| 5hxb | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-06-29 | PHE | B:429 | Y:429 | 33.0 | 0.157 | E | -127.8 | -179.4 | 33.0 | 0.157 | 0.0 | ||||||
| PHE | D:429 | B:429 | 41.0 | 0.195 | E | -126.7 | -179.2 | NA | NA | NA | |||||||||||||
| 5jk7 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-10-05 | PHE | A:429 | A:429 | 16.0 | 0.076 | E | -138.1 | 162.8 | 16.0 | 0.076 | 0.0 | ||||||
| PHE | B:429 | B:429 | 16.0 | 0.076 | E | -138.4 | 162.8 | NA | NA | NA | |||||||||||||
| 5v3o | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2017-05-03 | PHE | A:429 | A:429 | 11.0 | 0.052 | E | -128.8 | 176.9 | 11.0 | 0.052 | 0.0 | ||||||
| 6dsz | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-12-12 | PHE | A:429 | A:429 | 21.0 | 0.1 | -108.6 | 171.2 | 21.0 | 0.1 | 0.0 | |||||||
| PHE | B:429 | B:429 | 64.0 | 0.305 | E | -107.6 | 174.9 | NA | NA | NA | |||||||||||||
| 6pai | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-09-18 | PHE | A:429 | A:429 | 20.0 | 0.095 | -142.5 | -179.3 | 20.0 | 0.095 | 0.0 | |||||||
| 6sj7 | 2 | Q16531 | 100.0 | 0.0 |
EM |
2019-12-18 | PHE | B:429 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 6uml | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-04-15 | PHE | A:429 | A:429 | 10.0 | 0.048 | E | -140.0 | -178.6 | 10.0 | 0.048 | 0.0 | ||||||
| 6xk9 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-12-02 | PHE | B:429 | Y:429 | 38.0 | 0.181 | E | -104.5 | -172.9 | 38.0 | 0.181 | 0.0 | ||||||
| PHE | E:429 | B:429 | 37.0 | 0.176 | E | -104.5 | -174.5 | NA | NA | NA | |||||||||||||
| 7lps | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-06-02 | PHE | A:429 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| PHE | D:429 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
| PHE | G:429 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
| PHE | J:429 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
| 7oop | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | PHE | Z:429 | d:429 | 16.0 | 0.076 | S | -117.0 | -62.2 | 16.0 | 0.076 | 0.0 | ||||||
| 6zue | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-07-28 | PHE | A:431 | A:429 | 44.0 | 0.21 | E | -117.9 | -172.4 | 44.0 | 0.21 | 0.0 | ||||||
| 6zx9 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-07-21 | PHE | A:431 | A:429 | 24.0 | 0.114 | E | -123.8 | 163.6 | 24.0 | 0.114 | 0.0 |
HOH |
9.977 |
N |
O |
||
| 7oo3 | 20 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | PHE | T:432 | d:429 | 17.0 | 0.081 | -116.8 | -62.6 | 17.0 | 0.081 | 0.0 | |||||||
| 7oob | 14 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | PHE | N:432 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 7opc | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | PHE | Z:432 | d:429 | 56.0 | NA | -115.2 | -61.4 | 54.0 | NA | NA |
AA:Q13619:NA |
||||||
| 7opd | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | PHE | Z:432 | d:429 | 55.0 | NA | -115.3 | -61.5 | 51.0 | NA | NA |
AA:Q13619:NA |
||||||
| 4a0l | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-14 | PHE | A:433 | A:429 | 18.0 | 0.086 | B | -127.8 | -178.6 | 18.0 | 0.086 | 0.0 | ||||||
| PHE | C:433 | C:429 | 20.0 | 0.095 | B | -127.7 | -178.4 | NA | NA | NA | |||||||||||||
| 6r8y | 8 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | PHE | K:433 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 6r8z | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | PHE | K:452 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 6r90 | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | PHE | K:452 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 6r91 | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | PHE | K:452 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 6r92 | 8 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | PHE | L:452 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 4a0k | 3 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-14 | PHE | C:448 | C:429 | 19.0 | 0.09 | B | -128.0 | -178.7 | 17.0 | 0.081 | 0.009 |
A:Q13619:0.01 |
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| 4a11 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-07 | PHE | A:448 | A:429 | 12.0 | 0.057 | -122.3 | -82.7 | 12.0 | 0.057 | 0.0 | |||||||
| 7okq | 1 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | PHE | A:448 | A:429 | 29.0 | NA | E | -135.0 | -180.0 | 29.0 | NA | NA | ||||||
| PHE | E:448 | E:429 | 28.0 | NA | E | -135.1 | -180.0 | NA | NA | NA | |||||||||||||
| PHE | I:448 | I:429 | 28.0 | NA | E | -135.0 | 180.0 | NA | NA | NA | |||||||||||||
| PHE | M:448 | M:429 | 29.0 | NA | E | -135.0 | 180.0 | NA | NA | NA | |||||||||||||
| 3ei1 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | PHE | A:447 | A:429 | 33.0 | 0.157 | E | -128.1 | 171.5 | 33.0 | 0.157 | 0.0 | ||||||
| 3ei2 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | PHE | A:447 | A:429 | 28.0 | 0.133 | E | -137.0 | 169.9 | 28.0 | 0.133 | 0.0 |
HOH |
5.432 |
N |
O |
||
| 3ei3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | PHE | A:447 | A:429 | 24.0 | 0.114 | E | -142.2 | 160.7 | 24.0 | 0.114 | 0.0 |
HOH |
5.696 |
N |
O |
||
| 4ci1 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | PHE | A:447 | A:429 | 22.0 | 0.105 | E | -133.5 | 173.6 | 22.0 | 0.105 | 0.0 |
HOH |
4.025 |
CD1 |
O |
||
| 4ci2 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | PHE | A:447 | A:429 | 20.0 | 0.095 | E | -141.0 | 173.9 | 20.0 | 0.095 | 0.0 | ||||||
| 4ci3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | PHE | A:447 | A:429 | 21.0 | 0.1 | E | -133.5 | 175.9 | 21.0 | 0.1 | 0.0 | ||||||
| 6fcv | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-01-30 | PHE | A:447 | A:429 | 17.0 | 0.081 | -134.8 | -168.5 | 17.0 | 0.081 | 0.0 | |||||||
| 4tz4 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-08-06 | PHE | A:428 | A:429 | 11.0 | 0.052 | E | -128.0 | 179.9 | 11.0 | 0.052 | 0.0 | ||||||
| 3i7h | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | PHE | A:432 | A:429 | 18.0 | 0.086 | -111.5 | -177.8 | 18.0 | 0.086 | 0.0 | |||||||
| 3i7k | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | PHE | A:432 | A:429 | 20.0 | 0.095 | E | -109.3 | 167.6 | 20.0 | 0.095 | 0.0 | ||||||
| 3i7l | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | PHE | A:432 | A:429 | 40.0 | 0.19 | B | -76.6 | 176.7 | 40.0 | 0.19 | 0.0 | ||||||
| 3i7n | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | PHE | A:432 | A:429 | 30.0 | 0.143 | E | -138.8 | -177.4 | 30.0 | 0.143 | 0.0 | ||||||
| 3i7o | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | PHE | A:432 | A:429 | 27.0 | 0.129 | -138.1 | -177.1 | 27.0 | 0.129 | 0.0 | |||||||
| 3i7p | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | PHE | A:432 | A:429 | 42.0 | 0.2 | -147.1 | 176.5 | 42.0 | 0.2 | 0.0 | |||||||
| 3i89 | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | PHE | A:432 | A:429 | 22.0 | 0.105 | -146.2 | 179.9 | 22.0 | 0.105 | 0.0 | |||||||
| 3i8c | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | PHE | A:432 | A:429 | 44.0 | 0.21 | -135.9 | 172.1 | 44.0 | 0.21 | 0.0 | |||||||
| 3i8e | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | PHE | A:432 | A:429 | 44.0 | 0.21 | -111.1 | -179.2 | 44.0 | 0.21 | 0.0 | |||||||
| PHE | B:432 | B:429 | 26.0 | 0.124 | -171.7 | 163.6 | NA | NA | NA | ||||||||||||||
| 2b5l | 1 | 13435359 | 99.74 | 0.0 |
X-RAY |
2006-02-28 | PHE | A:429 | A:429 | 18.0 | 0.086 | -141.4 | 173.9 | 18.0 | 0.086 | 0.0 | |||||||
| PHE | B:429 | B:429 | 34.0 | 0.162 | -153.0 | 68.2 | NA | NA | NA | ||||||||||||||
| 2b5m | 1 | 13435359 | 99.74 | 0.0 |
X-RAY |
2006-02-28 | PHE | A:429 | A:429 | 15.0 | 0.071 | E | -114.2 | 161.2 | 15.0 | 0.071 | 0.0 | ||||||
| 2hye | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2006-10-03 | PHE | A:429 | A:429 | 18.0 | 0.086 | B | -127.8 | -178.6 | 14.0 | 0.067 | 0.019 |
C:Q13619:0.019 |
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| 4a0b | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | PHE | A:448 | A:429 | 23.0 | 0.11 | -119.2 | -158.2 | 23.0 | 0.11 | 0.0 | |||||||
| PHE | C:448 | C:429 | 23.0 | 0.11 | -118.1 | -157.8 | NA | NA | NA | ||||||||||||||
| 4a0a | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | PHE | A:448 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 4a08 | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | PHE | A:448 | A:429 | 20.0 | 0.095 | -122.5 | -171.7 | 20.0 | 0.095 | 0.0 | |||||||
| 4a09 | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | PHE | A:448 | A:429 | 19.0 | 0.09 | -122.1 | -150.3 | 19.0 | 0.09 | 0.0 | |||||||
| 4e54 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2012-08-08 | PHE | A:439 | A:429 | 21.0 | 0.1 | E | -136.1 | 169.3 | 21.0 | 0.1 | 0.0 | ||||||
| 4e5z | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2012-08-22 | PHE | A:439 | A:429 | 69.0 | 0.329 | E | -88.5 | 178.5 | 69.0 | 0.329 | 0.0 | ||||||
| 3ei4 | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-01-20 | PHE | A:447 | A:429 | 30.0 | 0.143 | -120.7 | -179.1 | 30.0 | 0.143 | 0.0 | |||||||
| PHE | C:447 | C:429 | 31.0 | 0.148 | -120.5 | 180.0 | NA | NA | NA | ||||||||||||||
| PHE | E:447 | E:429 | 30.0 | 0.143 | -122.0 | -179.4 | NA | NA | NA | ||||||||||||||
| 2b5n | 1 | 13435359 | 99.38 | 0.0 |
X-RAY |
2006-02-28 | PHE | A:43 | A:429 | 22.0 | 0.105 | E | -145.1 | 177.1 | 22.0 | 0.105 | 0.0 | ||||||
| PHE | B:43 | B:429 | 24.0 | 0.114 | E | -130.2 | 171.4 | NA | NA | NA | |||||||||||||
| PHE | C:43 | C:429 | 36.0 | 0.171 | E | -139.6 | 174.7 | NA | NA | NA | |||||||||||||
| PHE | D:43 | D:429 | 19.0 | 0.09 | -134.3 | 161.6 | NA | NA | NA | ||||||||||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-q16531-f1 | 1 | Q16531 | 100.0 | 0.0 | PHE | A:429 | A:429 | 12.0 | 0.057 | E | -131.3 | 174.8 | |