Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr11 | 61084009 | . | C | A | CCDS31576.1:NM_001923.4:c.1256cGt>cTt_NP_001914.3:p.419R>L | Homo sapiens damage specific DNA binding protein 1 (DDB1), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 3e0c | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2008-09-16 | ARG | A:419 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 5hxb | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-06-29 | ARG | B:419 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| ARG | D:419 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
| 5jk7 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-10-05 | ARG | A:419 | A:419 | 72.0 | 0.32 | -83.9 | 156.2 | 72.0 | 0.32 | 0.0 | |||||||
| ARG | B:419 | B:419 | 150.0 | 0.667 | -89.3 | 137.8 | NA | NA | NA | ||||||||||||||
| 5v3o | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2017-05-03 | ARG | A:419 | A:419 | 36.0 | NA | S | -122.0 | 140.6 | 36.0 | NA | NA | ||||||
| 6dsz | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-12-12 | ARG | A:419 | A:419 | 117.0 | 0.52 | -92.1 | 0.7 | 117.0 | 0.52 | 0.0 | |||||||
| ARG | B:419 | B:419 | 176.0 | 0.782 | 360.0 | 20.7 | NA | NA | NA | ||||||||||||||
| 6pai | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-09-18 | ARG | A:419 | A:419 | 107.0 | 0.476 | -56.5 | 127.4 | 107.0 | 0.476 | 0.0 | |||||||
| 6sj7 | 2 | Q16531 | 100.0 | 0.0 |
EM |
2019-12-18 | ARG | B:419 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 6uml | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-04-15 | ARG | A:419 | A:419 | 40.0 | NA | -109.2 | 360.0 | 40.0 | NA | NA | |||||||
| 6xk9 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-12-02 | ARG | B:419 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| ARG | E:419 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
| 7lps | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-06-02 | ARG | A:419 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| ARG | D:419 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
| ARG | G:419 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
| ARG | J:419 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
| 7oop | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | ARG | Z:419 | d:419 | 33.0 | NA | -65.5 | 137.4 | 33.0 | NA | NA | |||||||
| 6zue | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-07-28 | ARG | A:421 | A:419 | 161.0 | 0.716 | S | -72.8 | 148.6 | 161.0 | 0.716 | 0.0 | ||||||
| 6zx9 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-07-21 | ARG | A:421 | A:419 | 153.0 | 0.68 | S | -110.7 | 155.8 | 153.0 | 0.68 | 0.0 | ||||||
| 7oo3 | 20 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | ARG | T:422 | d:419 | 29.0 | NA | -65.4 | 137.2 | 29.0 | NA | NA | |||||||
| 7oob | 14 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | ARG | N:422 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 7opc | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | ARG | Z:422 | d:419 | 51.0 | NA | -68.1 | 143.8 | 51.0 | NA | NA | |||||||
| 7opd | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | ARG | Z:422 | d:419 | 53.0 | NA | -68.2 | 143.8 | 53.0 | NA | NA | |||||||
| 4a0l | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-14 | ARG | A:423 | A:419 | 79.0 | 0.351 | -53.6 | 146.4 | 79.0 | 0.351 | 0.0 | |||||||
| ARG | C:423 | C:419 | 79.0 | 0.351 | -53.7 | 146.4 | NA | NA | NA | ||||||||||||||
| 6r8y | 8 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ARG | K:423 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 6r8z | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ARG | K:442 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 6r90 | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ARG | K:442 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 6r91 | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ARG | K:442 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 6r92 | 8 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ARG | L:442 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 4a0k | 3 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-14 | ARG | C:438 | C:419 | 81.0 | 0.36 | -53.7 | 146.2 | 81.0 | 0.36 | 0.0 | |||||||
| 4a11 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-07 | ARG | A:438 | A:419 | 35.0 | NA | -76.9 | 134.3 | 35.0 | NA | NA | |||||||
| 7okq | 1 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | ARG | A:438 | A:419 | 54.0 | NA | -124.2 | 143.7 | 54.0 | NA | NA | |||||||
| ARG | E:438 | E:419 | 53.0 | NA | -124.2 | 143.7 | NA | NA | NA | ||||||||||||||
| ARG | I:438 | I:419 | 52.0 | NA | -124.2 | 143.7 | NA | NA | NA | ||||||||||||||
| ARG | M:438 | M:419 | 54.0 | NA | -124.2 | 143.7 | NA | NA | NA | ||||||||||||||
| 3ei1 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | ARG | A:437 | A:419 | 125.0 | 0.556 | S | -101.2 | 129.9 | 125.0 | 0.556 | 0.0 |
HOH |
9.679 |
O |
O |
||
| 3ei2 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | ARG | A:437 | A:419 | 125.0 | 0.556 | S | -97.4 | 133.8 | 125.0 | 0.556 | 0.0 | ||||||
| 3ei3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | ARG | A:437 | A:419 | 153.0 | 0.68 | -70.7 | 119.8 | 153.0 | 0.68 | 0.0 |
HOH |
6.667 |
O |
O |
|||
| 4ci1 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | ARG | A:437 | A:419 | 108.0 | 0.48 | -92.0 | 146.1 | 108.0 | 0.48 | 0.0 | |||||||
| 4ci2 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | ARG | A:437 | A:419 | 99.0 | 0.44 | -79.1 | 142.1 | 99.0 | 0.44 | 0.0 | |||||||
| 4ci3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | ARG | A:437 | A:419 | 108.0 | 0.48 | -98.1 | 145.1 | 108.0 | 0.48 | 0.0 | |||||||
| 6fcv | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-01-30 | ARG | A:437 | A:419 | 93.0 | 0.413 | -69.7 | 139.3 | 93.0 | 0.413 | 0.0 | |||||||
| 4tz4 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-08-06 | ARG | A:418 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 3i7h | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ARG | A:422 | A:419 | 150.0 | 0.667 | -95.2 | 110.1 | 150.0 | 0.667 | 0.0 | |||||||
| 3i7k | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ARG | A:422 | A:419 | 126.0 | 0.56 | -76.9 | -171.6 | 126.0 | 0.56 | 0.0 | |||||||
| 3i7l | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ARG | A:422 | A:419 | 150.0 | 0.667 | S | -42.4 | 127.5 | 150.0 | 0.667 | 0.0 | ||||||
| 3i7n | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ARG | A:422 | A:419 | 117.0 | 0.52 | -45.0 | 134.6 | 117.0 | 0.52 | 0.0 | |||||||
| 3i7o | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ARG | A:422 | A:419 | 87.0 | 0.387 | -60.9 | 136.9 | 87.0 | 0.387 | 0.0 | |||||||
| 3i7p | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ARG | A:422 | A:419 | 115.0 | 0.511 | S | -52.7 | 143.3 | 115.0 | 0.511 | 0.0 | ||||||
| 3i89 | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ARG | A:422 | A:419 | 111.0 | 0.493 | -52.9 | 139.4 | 111.0 | 0.493 | 0.0 | |||||||
| 3i8c | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ARG | A:422 | A:419 | 99.0 | 0.44 | -56.5 | 145.8 | 99.0 | 0.44 | 0.0 | |||||||
| 3i8e | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ARG | A:422 | A:419 | 102.0 | 0.453 | -71.3 | 131.0 | 102.0 | 0.453 | 0.0 | |||||||
| ARG | B:422 | B:419 | 101.0 | 0.449 | -79.7 | 141.3 | NA | NA | NA | ||||||||||||||
| 2b5l | 1 | 13435359 | 99.74 | 0.0 |
X-RAY |
2006-02-28 | ARG | A:419 | A:419 | 60.0 | 0.267 | -59.8 | 150.5 | 60.0 | 0.267 | 0.0 | |||||||
| ARG | B:419 | B:419 | 85.0 | 0.378 | -80.2 | 139.2 | NA | NA | NA | ||||||||||||||
| 2b5m | 1 | 13435359 | 99.74 | 0.0 |
X-RAY |
2006-02-28 | ARG | A:419 | A:419 | 162.0 | 0.72 | S | -110.3 | 24.2 | 162.0 | 0.72 | 0.0 | ||||||
| 2hye | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2006-10-03 | ARG | A:419 | A:419 | 81.0 | 0.36 | -53.8 | 146.3 | 81.0 | 0.36 | 0.0 | |||||||
| 4a0b | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | ARG | A:438 | A:419 | 78.0 | 0.347 | -150.6 | 133.1 | 78.0 | 0.347 | 0.0 | |||||||
| ARG | C:438 | C:419 | 76.0 | 0.338 | -150.3 | 133.1 | NA | NA | NA | ||||||||||||||
| 4a0a | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | ARG | A:438 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 4a08 | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | ARG | A:438 | A:419 | 113.0 | 0.502 | -143.4 | 159.5 | 113.0 | 0.502 | 0.0 | |||||||
| 4a09 | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | ARG | A:438 | A:419 | 199.0 | 0.884 | S | -73.3 | -1.7 | 199.0 | 0.884 | 0.0 | ||||||
| 4e54 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2012-08-08 | ARG | A:429 | A:419 | 60.0 | 0.267 | T | -94.1 | -8.5 | 60.0 | 0.267 | 0.0 | ||||||
| 4e5z | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2012-08-22 | ARG | A:429 | A:419 | 99.0 | 0.44 | T | -79.4 | -42.3 | 99.0 | 0.44 | 0.0 | ||||||
| 3ei4 | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-01-20 | ARG | A:437 | A:419 | 81.0 | 0.36 | -90.1 | 137.1 | 81.0 | 0.36 | 0.0 | |||||||
| ARG | C:437 | C:419 | 82.0 | 0.364 | -90.0 | 137.2 | NA | NA | NA | ||||||||||||||
| ARG | E:437 | E:419 | 82.0 | 0.364 | -89.4 | 135.9 | NA | NA | NA | ||||||||||||||
| 2b5n | 1 | 13435359 | 99.38 | 0.0 |
X-RAY |
2006-02-28 | ARG | A:33 | A:419 | 146.0 | 0.649 | -78.1 | -174.5 | 146.0 | 0.649 | 0.0 | |||||||
| ARG | B:33 | B:419 | 73.0 | 0.324 | -84.9 | 145.5 | NA | NA | NA | ||||||||||||||
| ARG | C:33 | C:419 | 66.0 | 0.293 | -68.6 | 148.5 | NA | NA | NA | ||||||||||||||
| ARG | D:33 | D:419 | 120.0 | 0.533 | -75.3 | 165.4 | NA | NA | NA | ||||||||||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-q16531-f1 | 1 | Q16531 | 100.0 | 0.0 | ARG | A:419 | A:419 | 88.0 | 0.391 | -91.1 | 140.1 | ||