Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr11 61094278 . C A CCDS31576.1:NM_001923.4:c.637Gaa>Taa_NP_001914.3:p.213E>* Homo sapiens damage specific DNA binding protein 1 (DDB1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3e0c 1 Q16531 100.0 0.0 X-RAY
 2008-09-16 GLU A:213 A:213 30.0 0.158 -52.8 138.2 30.0 0.158 0.0 HOH
 3.158
 N
 O
5hxb 2 Q16531 100.0 0.0 X-RAY
 2016-06-29 GLU B:213 Y:213 51.0 0.268 -53.3 145.5 51.0 0.268 0.0
GLU D:213 B:213 31.0 NA -52.7 145.6 NA NA NA
5jk7 1 Q16531 100.0 0.0 X-RAY
 2016-10-05 GLU A:213 A:213 54.0 0.284 -56.3 134.0 54.0 0.284 0.0
GLU B:213 B:213 58.0 0.305 -55.8 133.3 NA NA NA
5v3o 1 Q16531 100.0 0.0 X-RAY
 2017-05-03 GLU A:213 A:213 46.0 0.242 -43.7 138.5 46.0 0.242 0.0
6dsz 1 Q16531 100.0 0.0 X-RAY
 2018-12-12 GLU A:213 A:213 31.0 0.163 -67.9 153.3 31.0 0.163 0.0
GLU B:213 B:213 31.0 0.163 -65.9 153.0 NA NA NA
6pai 1 Q16531 100.0 0.0 X-RAY
 2019-09-18 GLU A:213 A:213 37.0 0.195 -63.8 141.8 37.0 0.195 0.0
6sj7 2 Q16531 100.0 0.0 EM
 2019-12-18 GLU B:213 B:213 61.0 0.321 -83.1 163.8 61.0 0.321 0.0
6uml 1 Q16531 100.0 0.0 X-RAY
 2020-04-15 GLU A:213 A:213 48.0 0.253 -39.8 154.5 48.0 0.253 0.0
6xk9 2 Q16531 100.0 0.0 X-RAY
 2020-12-02 GLU B:213 Y:213 34.0 0.179 -62.8 147.8 34.0 0.179 0.0
GLU E:213 B:213 22.0 NA -63.2 148.6 NA NA NA
7lps 1 Q16531 100.0 0.0 X-RAY
 2021-06-02 GLU A:213 A:213 37.0 0.195 -55.6 140.8 37.0 0.195 0.0
GLU D:213 D:213 38.0 0.2 -55.5 141.0 NA NA NA
GLU G:213 G:213 37.0 0.195 -50.9 141.2 NA NA NA
GLU J:213 J:213 37.0 0.195 -52.3 141.3 NA NA NA
7oop 26 Q16531 100.0 0.0 EM
 2021-10-06 GLU Z:213 d:213 36.0 0.189 -52.0 159.1 36.0 0.189 0.0
6zue 1 Q16531 100.0 0.0 X-RAY
 2021-07-28 GLU A:215 A:213 38.0 0.2 -57.3 138.8 38.0 0.2 0.0
6zx9 1 Q16531 100.0 0.0 X-RAY
 2021-07-21 GLU A:215 A:213 35.0 0.184 -44.0 149.1 35.0 0.184 0.0 HOH
 3.687
 CD
 O
7oo3 20 Q16531 100.0 0.0 EM
 2021-10-06 GLU T:216 d:213 41.0 0.216 -50.1 157.3 41.0 0.216 0.0
7oob 14 Q16531 100.0 0.0 EM
 2021-10-13 GLU N:216 d:213 37.0 0.195 -51.7 156.4 37.0 0.195 0.0
7opc 26 Q16531 100.0 0.0 EM
 2021-10-13 GLU Z:216 d:213 35.0 0.184 -52.5 157.5 35.0 0.184 0.0
7opd 26 Q16531 100.0 0.0 EM
 2021-10-06 GLU Z:216 d:213 35.0 0.184 -52.4 157.6 35.0 0.184 0.0
4a0l 1 Q16531 100.0 0.0 X-RAY
 2011-12-14 GLU A:217 A:213 37.0 0.195 -52.7 153.1 37.0 0.195 0.0
GLU C:217 C:213 37.0 0.195 -52.9 153.2 NA NA NA
6r8y 8 Q16531 100.0 0.0 EM
 2019-06-12 GLU K:217 K:213 39.0 0.205 -63.3 151.7 39.0 0.205 0.0
6r8z 7 Q16531 100.0 0.0 EM
 2019-06-12 GLU K:236 K:213 22.0 0.116 -61.4 148.2 22.0 0.116 0.0
6r90 7 Q16531 100.0 0.0 EM
 2019-06-12 GLU K:236 K:213 32.0 0.168 -58.5 148.0 32.0 0.168 0.0
6r91 7 Q16531 100.0 0.0 EM
 2019-06-12 GLU K:236 K:213 74.0 0.389 -56.1 148.6 74.0 0.389 0.0
6r92 8 Q16531 100.0 0.0 EM
 2019-06-12 GLU L:236 K:213 32.0 0.168 -56.1 148.2 32.0 0.168 0.0
4a0k 3 Q16531 100.0 0.0 X-RAY
 2011-12-14 GLU C:232 C:213 38.0 0.2 -52.8 153.1 38.0 0.2 0.0
4a11 1 Q16531 100.0 0.0 X-RAY
 2011-12-07 GLU A:232 A:213 33.0 0.174 -57.0 138.6 33.0 0.174 0.0
7okq 1 Q16531 100.0 0.0 EM
 2021-10-13 GLU A:232 A:213 42.0 NA -48.6 138.5 42.0 NA NA
GLU E:232 E:213 42.0 NA -48.6 138.5 NA NA NA
GLU I:232 I:213 42.0 NA -48.6 138.6 NA NA NA
GLU M:232 M:213 42.0 NA -48.6 138.6 NA NA NA
3ei1 1 Q16531 100.0 0.0 X-RAY
 2009-01-20 GLU A:231 A:213 40.0 0.211 -54.5 156.0 40.0 0.211 0.0 HOH
 4.628
 CB
 O
3ei2 1 Q16531 100.0 0.0 X-RAY
 2009-01-20 GLU A:231 A:213 37.0 0.195 -52.7 153.1 37.0 0.195 0.0 HOH
 8.126
 OE2
 O
3ei3 1 Q16531 100.0 0.0 X-RAY
 2009-01-20 GLU A:231 A:213 39.0 0.205 -53.8 146.6 39.0 0.205 0.0 HOH
 2.785
 OE2
 O
4ci1 1 Q16531 100.0 0.0 X-RAY
 2014-07-16 GLU A:231 A:213 42.0 0.221 -56.7 145.6 42.0 0.221 0.0
4ci2 1 Q16531 100.0 0.0 X-RAY
 2014-07-16 GLU A:231 A:213 44.0 0.232 -55.3 142.4 44.0 0.232 0.0
4ci3 1 Q16531 100.0 0.0 X-RAY
 2014-07-16 GLU A:231 A:213 38.0 0.2 -54.5 142.9 38.0 0.2 0.0
6fcv 1 Q16531 100.0 0.0 X-RAY
 2019-01-30 GLU A:231 A:213 31.0 0.163 -69.6 149.4 31.0 0.163 0.0
4tz4 1 Q16531 100.0 0.0 X-RAY
 2014-08-06 GLU A:212 A:213 42.0 0.221 -53.8 146.3 42.0 0.221 0.0
3i7h 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 GLU A:216 A:213 44.0 0.232 -60.2 144.9 44.0 0.232 0.0
3i7k 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 GLU A:216 A:213 40.0 0.211 -47.0 143.1 40.0 0.211 0.0
3i7l 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 GLU A:216 A:213 36.0 0.189 -63.4 143.9 36.0 0.189 0.0
3i7n 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 GLU A:216 A:213 46.0 0.242 -70.7 154.2 46.0 0.242 0.0
3i7o 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 GLU A:216 A:213 45.0 0.237 -79.7 148.1 45.0 0.237 0.0
3i7p 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 GLU A:216 A:213 45.0 0.237 -74.4 150.7 45.0 0.237 0.0
3i89 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 GLU A:216 A:213 43.0 0.226 -77.8 152.1 43.0 0.226 0.0
3i8c 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 GLU A:216 A:213 45.0 0.237 -64.1 148.1 45.0 0.237 0.0
3i8e 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 GLU A:216 A:213 47.0 0.247 -74.5 161.4 47.0 0.247 0.0
GLU B:216 B:213 32.0 0.168 -64.6 165.6 NA NA NA
2b5l 1 13435359 99.74 0.0 X-RAY
 2006-02-28 GLU A:213 A:213 31.0 0.163 -51.9 150.1 31.0 0.163 0.0
GLU B:213 B:213 39.0 0.205 -42.9 139.1 NA NA NA
2b5m 1 13435359 99.74 0.0 X-RAY
 2006-02-28 GLU A:213 A:213 47.0 0.247 -58.1 141.3 47.0 0.247 0.0
2hye 1 Q16531 99.74 0.0 X-RAY
 2006-10-03 GLU A:213 A:213 31.0 0.163 -17.7 117.6 31.0 0.163 0.0
4a0b 1 Q16531 99.91 0.0 X-RAY
 2011-11-30 GLU A:232 A:213 42.0 0.221 -48.2 142.2 42.0 0.221 0.0
GLU C:232 C:213 35.0 0.184 -62.5 142.3 NA NA NA
4a0a 1 Q16531 99.91 0.0 X-RAY
 2011-11-30 GLU A:232 A:213 33.0 0.174 -47.3 123.1 33.0 0.174 0.0
4a08 1 Q16531 99.91 0.0 X-RAY
 2011-11-30 GLU A:232 A:213 34.0 0.179 -52.5 140.9 34.0 0.179 0.0
4a09 1 Q16531 99.91 0.0 X-RAY
 2011-11-30 GLU A:232 A:213 34.0 0.179 -56.6 142.3 34.0 0.179 0.0
4e54 1 Q16531 100.0 0.0 X-RAY
 2012-08-08 GLU A:223 A:213 49.0 0.258 -48.6 151.9 40.0 0.211 0.047 B:Q92466:0.047
4e5z 1 Q16531 100.0 0.0 X-RAY
 2012-08-22 GLU A:223 A:213 68.0 0.358 33.9 -132.9 68.0 0.358 0.0
3ei4 1 Q16531 99.74 0.0 X-RAY
 2009-01-20 GLU A:231 A:213 37.0 0.195 -29.5 128.7 37.0 0.195 0.0
GLU C:231 C:213 38.0 0.2 -29.8 128.4 NA NA NA
GLU E:231 E:213 35.0 0.184 -29.1 128.2 NA NA NA
6ud7 2 Q16531 100.0 0.0 X-RAY
 2019-12-18 GLU B:213 B:213 47.0 0.247 -58.4 148.2 47.0 0.247 0.0 HOH
 3.856
 C
 O
6ue5 2 Q16531 100.0 0.0 X-RAY
 2019-12-18 GLU B:213 B:213 41.0 0.216 -55.8 149.2 41.0 0.216 0.0 HOH
 3.987
 C
 O
6td3 1 Q16531 100.0 0.0 X-RAY
 2020-06-17 GLU A:217 A:213 43.0 0.226 -52.8 147.8 43.0 0.226 0.0
GLU D:217 D:213 43.0 0.226 -52.5 147.8 NA NA NA
GLU G:217 G:213 43.0 0.226 -53.1 148.0 NA NA NA
5fqd 1 Q16531 100.0 0.0 X-RAY
 2016-02-24 GLU A:233 A:213 32.0 0.168 -60.0 146.6 32.0 0.168 0.0
GLU D:233 D:213 31.0 0.163 -59.9 147.0 NA NA NA
6h0f 1 ? 100.0 0.0 X-RAY
 2018-11-07 GLU A:233 A:213 40.0 0.211 -72.1 156.1 40.0 0.211 0.0
GLU D:233 D:213 42.0 0.221 -72.4 155.9 NA NA NA
GLU G:233 G:213 41.0 0.216 -75.1 155.9 NA NA NA
GLU J:233 J:213 41.0 0.216 -72.1 155.9 NA NA NA
6h0g 1 Q16531 100.0 0.0 X-RAY
 2018-11-07 GLU A:233 A:213 38.0 0.2 -59.1 141.1 38.0 0.2 0.0
GLU D:233 D:213 40.0 0.211 -58.8 141.0 NA NA NA
6bn7 1 Q16531 100.0 0.0 X-RAY
 2018-05-30 GLU A:241 A:213 26.0 0.137 -69.3 151.4 26.0 0.137 0.0
6bn8 1 Q16531 100.0 0.0 X-RAY
 2018-06-06 GLU A:241 A:213 40.0 0.211 -68.2 149.6 40.0 0.211 0.0
6bn9 1 Q16531 100.0 0.0 X-RAY
 2018-05-30 GLU A:241 A:213 29.0 0.153 -65.2 151.2 29.0 0.153 0.0
6bnb 1 Q16531 100.0 0.0 X-RAY
 2018-05-30 GLU A:241 A:213 30.0 0.158 -65.5 149.4 30.0 0.158 0.0
6boy 1 Q16531 100.0 0.0 X-RAY
 2018-05-30 GLU A:241 A:213 29.0 0.153 -64.9 148.5 29.0 0.153 0.0
6q0r 1 Q16531 100.0 0.0 X-RAY
 2019-11-13 GLU A:241 A:213 39.0 0.205 -53.2 140.8 39.0 0.205 0.0
6q0v 1 Q16531 100.0 0.0 X-RAY
 2019-11-13 GLU A:241 A:213 41.0 0.216 -61.1 142.1 41.0 0.216 0.0
6q0w 1 Q16531 100.0 0.0 X-RAY
 2019-11-13 GLU A:241 A:213 30.0 0.158 -54.6 145.3 30.0 0.158 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q16531-f1 1 Q16531 100.0 0.0 GLU A:213 A:213 35.0 0.184 -49.8 136.4