Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr11 61097043 . C A CCDS31576.1:NM_001923.4:c.341cGc>cTc_NP_001914.3:p.114R>L Homo sapiens damage specific DNA binding protein 1 (DDB1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3e0c 1 Q16531 100.0 0.0 X-RAY
 2008-09-16 ARG A:114 NA:NA DO NA DO DO DO NA NA NA
5hxb 2 Q16531 100.0 0.0 X-RAY
 2016-06-29 ARG B:114 Y:114 67.0 NA -79.1 117.2 67.0 NA NA
ARG D:114 B:114 68.0 NA -79.3 117.7 NA NA NA
5jk7 1 Q16531 100.0 0.0 X-RAY
 2016-10-05 ARG A:114 A:114 143.0 0.636 -110.3 124.9 81.0 0.36 0.276 C:Q9Y4B6:0.276
ARG B:114 B:114 143.0 0.636 -110.3 125.2 NA NA NA
5v3o 1 Q16531 100.0 0.0 X-RAY
 2017-05-03 ARG A:114 A:114 61.0 NA -90.1 109.5 61.0 NA NA
6dsz 1 Q16531 100.0 0.0 X-RAY
 2018-12-12 ARG A:114 A:114 177.0 0.787 -110.2 119.8 177.0 0.787 0.0
ARG B:114 B:114 178.0 0.791 -101.6 140.8 NA NA NA
6pai 1 Q16531 100.0 0.0 X-RAY
 2019-09-18 ARG A:114 A:114 160.0 0.711 -112.2 116.7 70.0 0.311 0.4 B:Q66K64:0.4
6sj7 2 Q16531 100.0 0.0 EM
 2019-12-18 ARG B:114 B:114 130.0 0.578 -106.9 153.2 24.0 0.107 0.471 A:Q66K64:0.471
6uml 1 Q16531 100.0 0.0 X-RAY
 2020-04-15 ARG A:114 A:114 59.0 NA -101.7 129.5 59.0 NA NA
6xk9 2 Q16531 100.0 0.0 X-RAY
 2020-12-02 ARG B:114 Y:114 66.0 NA -109.6 114.1 66.0 NA NA
ARG E:114 B:114 63.0 NA -110.0 113.7 NA NA NA
7lps 1 Q16531 100.0 0.0 X-RAY
 2021-06-02 ARG A:114 A:114 65.0 NA -100.1 113.4 65.0 NA NA
ARG D:114 D:114 64.0 NA -100.0 113.3 NA NA NA
ARG G:114 G:114 66.0 NA -100.7 113.7 NA NA NA
ARG J:114 J:114 65.0 NA -100.6 114.0 NA NA NA
7oop 26 Q16531 100.0 0.0 EM
 2021-10-06 ARG Z:114 d:114 144.0 0.64 -81.5 105.6 29.0 0.129 0.511 W:Q13216:0.511
6zue 1 Q16531 100.0 0.0 X-RAY
 2021-07-28 ARG A:116 A:114 134.0 0.596 -107.3 131.3 64.0 0.284 0.312 B:Q9Y4B6:0.311
6zx9 1 Q16531 100.0 0.0 X-RAY
 2021-07-21 ARG A:116 A:114 156.0 0.693 -96.7 103.6 56.0 0.249 0.444 B:Q9Y4B6:0.444
 HOH
 6.700
 NH2
 O
7oo3 20 Q16531 100.0 0.0 EM
 2021-10-06 ARG T:117 d:114 143.0 0.636 -83.5 105.0 23.0 0.102 0.534 P:Q13216:0.533
7oob 14 Q16531 100.0 0.0 EM
 2021-10-13 ARG N:117 d:114 135.0 0.6 -86.6 104.7 46.0 0.204 0.396 R:Q13216:0.396
7opc 26 Q16531 100.0 0.0 EM
 2021-10-13 ARG Z:117 d:114 133.0 0.591 -83.2 105.5 30.0 0.133 0.458 W:Q13216:0.458
7opd 26 Q16531 100.0 0.0 EM
 2021-10-06 ARG Z:117 d:114 133.0 0.591 -83.3 105.6 30.0 0.133 0.458 W:Q13216:0.458
4a0l 1 Q16531 100.0 0.0 X-RAY
 2011-12-14 ARG A:118 A:114 196.0 0.871 -96.9 110.2 58.0 0.258 0.613 B:Q2YDS1:0.613
ARG C:118 C:114 193.0 0.858 -96.7 110.2 NA NA NA
6r8y 8 Q16531 100.0 0.0 EM
 2019-06-12 ARG K:118 K:114 191.0 0.849 -89.5 122.4 39.0 0.173 0.676 L:Q92466:0.676
6r8z 7 Q16531 100.0 0.0 EM
 2019-06-12 ARG K:137 K:114 202.0 0.898 -93.7 119.9 63.0 0.28 0.618 L:Q92466:0.618
6r90 7 Q16531 100.0 0.0 EM
 2019-06-12 ARG K:137 K:114 186.0 0.827 -103.7 121.3 36.0 0.16 0.667 L:Q92466:0.667
6r91 7 Q16531 100.0 0.0 EM
 2019-06-12 ARG K:137 K:114 200.0 0.889 -102.7 118.2 48.0 0.213 0.676 L:Q92466:0.676
6r92 8 Q16531 100.0 0.0 EM
 2019-06-12 ARG L:137 K:114 212.0 0.942 -103.1 118.1 54.0 0.24 0.702 C:Q92466:0.702
4a0k 3 Q16531 100.0 0.0 X-RAY
 2011-12-14 ARG C:133 C:114 196.0 0.871 -96.9 110.0 146.0 0.649 0.222 D:Q2YDS1:0.222
4a11 1 Q16531 100.0 0.0 X-RAY
 2011-12-07 ARG A:133 A:114 138.0 0.613 E -90.7 106.0 18.0 0.08 0.533 B:Q13216:0.533
7okq 1 Q16531 100.0 0.0 EM
 2021-10-13 ARG A:133 A:114 72.0 NA -133.1 136.2 50.0 NA NA B:Q9Y4B6:NA
ARG E:133 E:114 73.0 NA -133.1 136.3 NA NA NA
ARG I:133 I:114 73.0 NA -133.1 136.2 NA NA NA
ARG M:133 M:114 73.0 NA -133.1 136.3 NA NA NA
3ei1 1 Q16531 100.0 0.0 X-RAY
 2009-01-20 ARG A:132 A:114 195.0 0.867 -92.6 114.2 62.0 0.276 0.591 B:Q2YDS1:0.591
 HOH
 4.660
 N
 O
3ei2 1 Q16531 100.0 0.0 X-RAY
 2009-01-20 ARG A:132 A:114 193.0 0.858 -96.7 110.2 56.0 0.249 0.609 B:Q2YDS1:0.609
 HOH
 4.028
 CB
 O
3ei3 1 Q16531 100.0 0.0 X-RAY
 2009-01-20 ARG A:132 A:114 198.0 0.88 -97.2 108.5 60.0 0.267 0.613 B:Q2YDS1:0.613
 HOH
 3.134
 N
 O
4ci1 1 Q16531 100.0 0.0 X-RAY
 2014-07-16 ARG A:132 A:114 73.0 NA -93.1 120.3 73.0 NA NA
4ci2 1 Q16531 100.0 0.0 X-RAY
 2014-07-16 ARG A:132 A:114 75.0 NA -91.7 113.1 75.0 NA NA
4ci3 1 Q16531 100.0 0.0 X-RAY
 2014-07-16 ARG A:132 A:114 69.0 NA -92.6 116.2 69.0 NA NA
6fcv 1 Q16531 100.0 0.0 X-RAY
 2019-01-30 ARG A:132 A:114 147.0 0.653 -73.0 116.4 22.0 0.098 0.555 B:Q13216:0.556
4tz4 1 Q16531 100.0 0.0 X-RAY
 2014-08-06 ARG A:113 A:114 63.0 NA -79.4 116.0 63.0 NA NA
3i7h 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ARG A:117 A:114 159.0 0.707 -77.5 142.4 159.0 0.707 0.0
3i7k 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ARG A:117 A:114 159.0 0.707 -88.4 126.0 159.0 0.707 0.0
3i7l 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ARG A:117 A:114 156.0 0.693 -106.0 103.5 156.0 0.693 0.0
3i7n 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ARG A:117 A:114 158.0 0.702 -103.4 121.7 158.0 0.702 0.0
3i7o 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ARG A:117 A:114 188.0 0.836 -96.4 136.4 188.0 0.836 0.0
3i7p 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ARG A:117 A:114 163.0 0.724 -102.5 122.3 163.0 0.724 0.0
3i89 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ARG A:117 A:114 181.0 0.804 -94.9 125.0 181.0 0.804 0.0
3i8c 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ARG A:117 A:114 172.0 0.764 -93.7 110.4 172.0 0.764 0.0
3i8e 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ARG A:117 A:114 177.0 0.787 -64.0 128.9 177.0 0.787 0.0
ARG B:117 B:114 166.0 0.738 -76.9 130.3 NA NA NA
2b5l 1 13435359 99.74 0.0 X-RAY
 2006-02-28 ARG A:114 A:114 148.0 0.658 -89.9 115.1 118.0 0.524 0.134 C:P11207:0.133
ARG B:114 B:114 161.0 0.716 -93.8 144.9 NA NA NA
2b5m 1 13435359 99.74 0.0 X-RAY
 2006-02-28 ARG A:114 A:114 159.0 0.707 -93.4 133.2 159.0 0.707 0.0
2hye 1 Q16531 99.74 0.0 X-RAY
 2006-10-03 ARG A:114 A:114 149.0 0.662 -122.6 112.8 149.0 0.662 0.0
4a0b 1 Q16531 99.91 0.0 X-RAY
 2011-11-30 ARG A:133 A:114 204.0 0.907 -108.6 115.6 63.0 0.28 0.627 B:Q2YDS1:0.627
ARG C:133 C:114 195.0 0.867 -95.3 121.5 NA NA NA
4a0a 1 Q16531 99.91 0.0 X-RAY
 2011-11-30 ARG A:133 A:114 191.0 0.849 -84.1 112.6 42.0 0.187 0.662 B:Q2YDS1:0.662
4a08 1 Q16531 99.91 0.0 X-RAY
 2011-11-30 ARG A:133 A:114 196.0 0.871 -97.6 119.6 63.0 0.28 0.591 B:Q2YDS1:0.591
4a09 1 Q16531 99.91 0.0 X-RAY
 2011-11-30 ARG A:133 A:114 200.0 0.889 -82.0 119.1 45.0 0.2 0.689 B:Q2YDS1:0.689
 HOH
 6.792
 C
 O
4e54 1 Q16531 100.0 0.0 X-RAY
 2012-08-08 ARG A:124 A:114 187.0 0.831 -97.6 110.3 40.0 0.178 0.653 B:Q92466:0.653
4e5z 1 Q16531 100.0 0.0 X-RAY
 2012-08-22 ARG A:124 A:114 213.0 0.947 -92.3 120.2 75.0 0.333 0.614 B:Q92466:0.613
3ei4 1 Q16531 99.74 0.0 X-RAY
 2009-01-20 ARG A:132 A:114 120.0 0.533 -92.6 131.5 31.0 0.138 0.395 B:Q92466:0.396
ARG C:132 C:114 122.0 0.542 -92.8 132.0 NA NA NA
ARG E:132 E:114 119.0 0.529 -93.7 132.0 NA NA NA
6ud7 2 Q16531 100.0 0.0 X-RAY
 2019-12-18 ARG B:114 B:114 158.0 0.702 -96.5 133.6 57.0 0.253 0.449 A:Q66K64:0.449
 EF6
HOH
 9.833
3.250
 NH1
N
 O1
O
6ue5 2 Q16531 100.0 0.0 X-RAY
 2019-12-18 ARG B:114 B:114 160.0 0.711 -90.4 137.4 64.0 0.284 0.427 A:Q66K64:0.427
 HOH
 2.938
 NH2
 O
6td3 1 Q16531 100.0 0.0 X-RAY
 2020-06-17 ARG A:118 A:114 143.0 0.636 -106.1 116.9 40.0 0.178 0.458 B:Q9NYV4:0.458
ARG D:118 D:114 144.0 0.64 -106.1 117.3 NA NA NA
ARG G:118 G:114 147.0 0.653 -105.9 117.2 NA NA NA
5fqd 1 Q16531 100.0 0.0 X-RAY
 2016-02-24 ARG A:134 A:114 62.0 NA -88.3 104.4 62.0 NA NA
ARG D:134 D:114 141.0 0.627 -87.8 105.8 NA NA NA
6h0f 1 ? 100.0 0.0 X-RAY
 2018-11-07 ARG A:134 A:114 141.0 0.627 -80.3 113.5 141.0 0.627 0.0
ARG D:134 D:114 141.0 0.627 -80.0 113.4 NA NA NA
ARG G:134 G:114 139.0 0.618 -80.3 113.3 NA NA NA
ARG J:134 J:114 142.0 0.631 -79.9 113.4 NA NA NA
6h0g 1 Q16531 100.0 0.0 X-RAY
 2018-11-07 ARG A:134 A:114 196.0 0.871 -94.9 108.7 196.0 0.871 0.0
ARG D:134 D:114 145.0 0.644 -96.5 104.6 NA NA NA
6bn7 1 Q16531 100.0 0.0 X-RAY
 2018-05-30 ARG A:142 A:114 65.0 NA -96.2 123.0 65.0 NA NA
6bn8 1 Q16531 100.0 0.0 X-RAY
 2018-06-06 ARG A:142 A:114 73.0 NA -89.2 129.4 73.0 NA NA
6bn9 1 Q16531 100.0 0.0 X-RAY
 2018-05-30 ARG A:142 A:114 71.0 NA -88.8 120.7 71.0 NA NA
6bnb 1 Q16531 100.0 0.0 X-RAY
 2018-05-30 ARG A:142 A:114 74.0 NA -90.1 137.0 74.0 NA NA
6boy 1 Q16531 100.0 0.0 X-RAY
 2018-05-30 ARG A:142 A:114 64.0 NA -91.3 118.5 64.0 NA NA
6q0r 1 Q16531 100.0 0.0 X-RAY
 2019-11-13 ARG A:142 A:114 154.0 0.684 -107.1 131.1 73.0 0.324 0.36 B:Q66K64:0.129
C:Q66K64:0.236
 HOH
 3.021
 NH2
 O
6q0v 1 Q16531 100.0 0.0 X-RAY
 2019-11-13 ARG A:142 A:114 158.0 0.702 -105.1 130.7 76.0 0.338 0.364 B:Q66K64:0.12
C:Q66K64:0.244
 HOH
 2.942
 N
 O
6q0w 1 Q16531 100.0 0.0 X-RAY
 2019-11-13 ARG A:142 A:114 155.0 0.689 -105.9 126.1 73.0 0.324 0.365 B:Q66K64:0.133
C:Q66K64:0.231
 HOH
 6.076
 NH2
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q16531-f1 1 Q16531 100.0 0.0 ARG A:114 A:114 150.0 0.667 -79.0 115.8