Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr11 66039706 . A C CCDS31613.1:NM_030981.2:c.166Act>Cct_NP_112243.1:p.56T>P Homo sapiens RAB1B, member RAS oncogene family (RAB1B), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5szh 2 Q9H0U4 100.0 1e-150 X-RAY
 2016-08-24 THR B:58 B:56 52.0 0.371 E -89.9 119.4 52.0 0.371 0.0
5szk 2 Q9H0U4 98.51 2e-147 X-RAY
 2016-08-24 THR B:58 B:56 29.0 0.207 E -91.1 119.4 29.0 0.207 0.0 HOH
 9.268
 CB
 O
3tkl 1 P62820 94.15 5e-129 X-RAY
 2012-06-27 THR A:64 A:59 36.0 0.257 E -89.9 117.8 36.0 0.257 0.0 HOH
 7.829
 O
 O
5o74 2 Q9H0U4 98.85 3e-126 X-RAY
 2017-10-11 THR B:56 B:56 47.0 0.336 E -96.5 130.1 47.0 0.336 0.0
THR D:56 D:56 29.0 0.207 E -97.3 124.1 NA NA NA
THR F:56 F:56 53.0 0.379 E -92.9 129.2 NA NA NA
THR H:56 H:56 47.0 0.336 E -96.6 129.6 NA NA NA
THR J:56 J:56 45.0 0.321 E -95.8 130.2 NA NA NA
THR L:56 L:56 43.0 0.307 E -80.9 127.9 NA NA NA
3jza 1 Q9H0U4 100.0 5e-126 X-RAY
 2010-01-19 THR A:57 A:56 33.0 0.236 E -90.0 120.8 33.0 0.236 0.0 HOH
 4.078
 CB
 O
3nkv 1 Q9H0U4 100.0 5e-126 X-RAY
 2010-08-04 THR A:57 A:56 27.0 0.193 E -102.7 123.3 27.0 0.193 0.0 HOH
 7.057
 O
 O
THR B:57 B:56 28.0 0.2 E -94.6 124.5 NA NA NA
4hlq 2 Q9H0U4 100.0 5e-126 X-RAY
 2013-01-16 THR B:57 B:56 50.0 0.357 E -104.3 133.2 50.0 0.357 0.0 HOH
 8.236
 CG2
 O
THR D:57 D:56 56.0 0.4 E -88.1 120.3 NA NA NA
THR F:57 F:56 56.0 0.4 E -77.1 124.7 NA NA NA
THR H:57 H:56 46.0 0.329 E -85.1 138.1 NA NA NA
THR J:57 J:56 49.0 NA E -71.9 102.6 NA NA NA
4i1o 1 Q9H0U4 100.0 6e-126 X-RAY
 2013-01-16 THR A:57 A:56 33.0 0.236 E -93.6 117.8 33.0 0.236 0.0
THR C:57 C:56 30.0 0.214 E -94.9 119.5 NA NA NA
THR E:57 E:56 35.0 0.25 E -94.9 118.0 NA NA NA
THR G:57 G:56 26.0 0.186 E -94.6 113.6 NA NA NA
6sku 2 Q9H0U4 100.0 9e-126 X-RAY
 2020-06-10 THR B:57 B:55 56.0 0.4 E -75.2 112.6 56.0 0.4 0.0
4jvs 2 P62820 97.13 2e-123 X-RAY
 2013-05-08 THR B:63 B:59 47.0 0.336 E -94.4 122.3 47.0 0.336 0.0
4iru 2 P62820 97.13 2e-123 X-RAY
 2013-07-10 THR B:66 B:59 37.0 0.264 E -86.9 128.3 37.0 0.264 0.0 HOH
 8.062
 O
 O
THR D:66 D:59 33.0 0.236 E -79.1 112.9 NA NA NA
THR F:66 F:59 56.0 0.4 -68.3 125.3 NA NA NA
2wwx 1 P62820 96.57 3e-123 X-RAY
 2009-12-08 THR A:56 A:56 45.0 0.321 E -94.4 124.6 45.0 0.321 0.0 HOH
 7.606
 O
 O
3l0i 2 P62820 97.13 5e-123 X-RAY
 2009-12-22 THR B:81 B:59 54.0 0.386 E -78.1 119.2 54.0 0.386 0.0
THR D:81 D:59 47.0 0.336 E -82.6 124.3 NA NA NA
3sfv 1 P62820 96.53 5e-122 X-RAY
 2012-04-18 THR A:64 A:59 26.0 0.186 E -98.4 121.6 26.0 0.186 0.0 HOH
 3.100
 OG1
 O
2fol 1 P62820 96.53 3e-121 X-RAY
 2006-01-31 THR A:73 A:56 39.0 0.279 E -85.6 130.9 39.0 0.279 0.0
4fmc 2 P62820 97.08 7e-121 X-RAY
 2012-09-05 THR B:54 B:59 34.0 0.243 E -83.9 117.0 34.0 0.243 0.0
THR D:54 D:59 47.0 0.336 E -88.0 123.9 NA NA NA
4fmd 2 P62820 97.08 7e-121 X-RAY
 2012-09-05 THR B:54 B:59 30.0 0.214 E -83.5 123.1 30.0 0.214 0.0
THR D:54 D:59 37.0 0.264 E -100.2 123.9 NA NA NA
4fme 2 P62820 97.08 7e-121 X-RAY
 2012-09-05 THR B:54 B:59 34.0 0.243 E -80.1 96.0 34.0 0.243 0.0
THR E:54 E:59 34.0 0.243 E -79.9 96.4 NA NA NA
4fmb 2 P62820 96.49 1e-119 X-RAY
 2012-09-05 THR B:54 B:59 35.0 0.25 -133.0 107.3 35.0 0.25 0.0
THR D:54 D:59 33.0 0.236 -132.8 107.2 NA NA NA
THR F:54 F:59 34.0 0.243 -133.1 106.4 NA NA NA
4fmd 3 P62820 96.95 1e-114 X-RAY
 2012-09-05 THR F:47 NA:NA DO NA DO DO DO NA NA NA
2rhd 1 Q7YYW6 82.66 7e-105 X-RAY
 2007-10-23 THR A:57 A:57 50.0 0.357 E -91.1 125.3 50.0 0.357 0.0 HOH
 3.470
 OG1
 O
4fmc 3 P62820 97.44 1e-79 X-RAY
 2012-09-05 THR F:46 NA:NA DO NA DO DO DO NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9h0u4-f1 1 Q9H0U4 100.0 4e-151 THR A:56 A:56 37.0 0.264 E -83.1 117.4
af-q92928-f1 1 Q92928 95.52 6e-143 THR A:56 A:56 32.0 0.229 E -81.4 113.3
af-p62820-f1 1 P62820 93.07 1e-139 THR A:59 A:59 36.0 0.257 E -84.0 116.7