Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr11 66043339 . A C CCDS31613.1:NM_030981.2:c.344aAt>aCt_NP_112243.1:p.115N>T Homo sapiens RAB1B, member RAS oncogene family (RAB1B), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5szh 2 Q9H0U4 100.0 1e-150 X-RAY
 2016-08-24 ASN B:117 B:115 26.0 0.163 E -78.2 151.3 26.0 0.163 0.0 HOH
 5.670
 N
 O
5szk 2 Q9H0U4 98.51 2e-147 X-RAY
 2016-08-24 ASN B:117 B:115 24.0 0.15 E -82.0 148.7 24.0 0.15 0.0
3tkl 1 P62820 94.15 5e-129 X-RAY
 2012-06-27 ASN A:123 A:118 26.0 0.163 E -83.2 150.9 26.0 0.163 0.0 HOH
 3.287
 ND2
 O
5o74 2 Q9H0U4 98.85 3e-126 X-RAY
 2017-10-11 ASN B:115 B:115 21.0 0.131 E -92.5 151.8 21.0 0.131 0.0
ASN D:115 D:115 18.0 0.113 E -90.8 153.4 NA NA NA
ASN F:115 F:115 30.0 0.188 E -93.7 154.7 NA NA NA
ASN H:115 H:115 23.0 0.144 E -93.0 151.9 NA NA NA
ASN J:115 J:115 8.0 0.05 E -90.2 150.6 NA NA NA
ASN L:115 L:115 23.0 0.144 E -95.0 155.8 NA NA NA
3jza 1 Q9H0U4 100.0 5e-126 X-RAY
 2010-01-19 ASN A:116 A:115 22.0 0.138 E -77.6 140.4 22.0 0.138 0.0 HOH
 3.388
 ND2
 O
3nkv 1 Q9H0U4 100.0 5e-126 X-RAY
 2010-08-04 ASN A:116 A:115 27.0 0.169 E -85.3 149.7 27.0 0.169 0.0 HOH
 2.851
 OD1
 O
ASN B:116 B:115 11.0 0.069 E -67.1 131.0 NA NA NA
4hlq 2 Q9H0U4 100.0 5e-126 X-RAY
 2013-01-16 ASN B:116 B:115 17.0 0.106 E -82.3 132.1 17.0 0.106 0.0
ASN D:116 D:115 31.0 0.194 E -69.0 132.9 NA NA NA
ASN F:116 F:115 20.0 0.125 E -79.4 141.1 NA NA NA
ASN H:116 H:115 26.0 NA E -63.9 133.2 NA NA NA
ASN J:116 J:115 26.0 0.163 E -77.2 137.0 NA NA NA
4i1o 1 Q9H0U4 100.0 6e-126 X-RAY
 2013-01-16 ASN A:116 A:115 23.0 0.144 E -80.2 136.5 23.0 0.144 0.0 HOH
 3.411
 ND2
 O
ASN C:116 C:115 23.0 0.144 E -86.5 136.1 NA NA NA
ASN E:116 E:115 21.0 0.131 E -78.3 140.2 NA NA NA
ASN G:116 G:115 24.0 0.15 E -79.5 134.9 NA NA NA
6sku 2 Q9H0U4 100.0 9e-126 X-RAY
 2020-06-10 ASN B:116 B:114 15.0 0.094 E -92.8 129.6 15.0 0.094 0.0
4jvs 2 P62820 97.13 2e-123 X-RAY
 2013-05-08 ASN B:122 B:118 26.0 0.163 E -77.5 139.7 26.0 0.163 0.0
4iru 2 P62820 97.13 2e-123 X-RAY
 2013-07-10 ASN B:125 B:118 20.0 0.125 B -86.5 109.7 20.0 0.125 0.0
ASN D:125 D:118 22.0 0.138 E -95.5 105.6 NA NA NA
ASN F:125 F:118 39.0 0.244 -69.1 129.7 NA NA NA
2wwx 1 P62820 96.57 3e-123 X-RAY
 2009-12-08 ASN A:115 A:115 20.0 0.125 E -73.9 128.5 20.0 0.125 0.0 HOH
 3.591
 CA
 O
3l0i 2 P62820 97.13 5e-123 X-RAY
 2009-12-22 ASN B:140 B:118 23.0 0.144 E -74.6 145.1 23.0 0.144 0.0
ASN D:140 D:118 13.0 0.081 E -88.1 134.2 NA NA NA
3sfv 1 P62820 96.53 5e-122 X-RAY
 2012-04-18 ASN A:123 A:118 27.0 0.169 E -88.3 156.2 27.0 0.169 0.0 HOH
 2.974
 OD1
 O
2fol 1 P62820 96.53 3e-121 X-RAY
 2006-01-31 ASN A:132 A:115 18.0 0.113 E -70.0 150.0 18.0 0.113 0.0 HOH
 7.048
 OD1
 O
4fmc 2 P62820 97.08 7e-121 X-RAY
 2012-09-05 ASN B:113 B:118 25.0 0.156 E -90.9 137.6 25.0 0.156 0.0
ASN D:113 D:118 28.0 0.175 E -88.5 152.5 NA NA NA
4fmd 2 P62820 97.08 7e-121 X-RAY
 2012-09-05 ASN B:113 B:118 21.0 0.131 E -99.2 135.2 21.0 0.131 0.0
ASN D:113 D:118 27.0 0.169 E -88.7 145.5 NA NA NA
4fme 2 P62820 97.08 7e-121 X-RAY
 2012-09-05 ASN B:113 B:118 23.0 0.144 E -71.2 102.9 23.0 0.144 0.0
ASN E:113 E:118 22.0 0.138 E -71.9 102.8 NA NA NA
4fmb 2 P62820 96.49 1e-119 X-RAY
 2012-09-05 ASN B:113 B:118 13.0 0.081 E -82.8 135.5 13.0 0.081 0.0
ASN D:113 D:118 14.0 0.087 E -82.9 136.3 NA NA NA
ASN F:113 F:118 14.0 0.087 E -82.6 135.5 NA NA NA
4fmd 3 P62820 96.95 1e-114 X-RAY
 2012-09-05 ASN F:106 F:118 11.0 0.069 E -82.9 142.3 NA NA NA
2rhd 1 Q7YYW6 82.66 7e-105 X-RAY
 2007-10-23 ASN A:116 A:116 28.0 0.175 E -81.2 147.8 28.0 0.175 0.0 HOH
 2.986
 ND2
 O
4fmc 3 P62820 97.44 1e-79 X-RAY
 2012-09-05 ASN F:105 NA:NA DO NA DO DO DO NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9h0u4-f1 1 Q9H0U4 100.0 4e-151 ASN A:115 A:115 24.0 0.15 E -71.8 136.3
af-q92928-f1 1 Q92928 95.52 6e-143 ASN A:115 A:115 10.0 0.062 E -65.6 142.1
af-p62820-f1 1 P62820 93.07 1e-139 ASN A:118 A:118 23.0 0.144 E -71.3 135.7