Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr11 73418514 . T A CCDS8223.1:NM_002869.4:c.446aAt>aTt_NP_002860.2:p.149N>I Homo sapiens RAB6A, member RAS oncogene family (RAB6A), transcript variant 1, mRNA.
pdb_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4dkx 1 P20340 99.52 3e-155 X-RAY
 2012-10-17 ASN A:149 A:149 139.0 0.869 T 59.9 46.1 139.0 0.869 0.0 HOH
 2.823
 OD1
 O
ASN B:149 B:149 137.0 0.856 T 55.0 48.6 NA NA NA
3bbp 1 P20340 98.06 3e-150 X-RAY
 2008-02-05 ASN A:152 A:149 137.0 0.856 T 50.9 59.7 137.0 0.856 0.0
ASN B:152 B:149 137.0 0.856 T 51.0 59.4 137.0 0.856 0.0
ASN C:152 C:149 136.0 0.85 T 50.9 59.7 NA NA NA
5lef 1 P20340 96.86 1e-135 X-RAY
 2017-11-15 ASN A:145 A:149 136.0 0.85 T 54.2 48.2 136.0 0.85 0.0 GOL
HOH
 8.948
2.256
 HA
HD21
 HO3
O
ASN B:145 B:149 134.0 0.838 T 53.9 63.1 134.0 0.838 0.0 HOH
 2.526
 HD22
 O
3cwz 1 P20340 97.87 5e-135 X-RAY
 2008-11-18 ASN A:142 A:149 126.0 0.787 T -67.9 76.9 126.0 0.787 0.0
1yzq 1 P20340 99.41 1e-123 X-RAY
 2005-07-26 ASN A:142 A:149 133.0 0.831 T 53.3 50.3 133.0 0.831 0.0 HOH
 2.783
 OD1
 O
2y8e 1 O18334 93.75 1e-122 X-RAY
 2011-07-06 ASN A:150 A:148 117.0 0.731 T 63.8 45.9 117.0 0.731 0.0 HOH
 3.476
 O
 O
ASN B:150 B:148 137.0 0.856 T 53.5 55.7 NA NA NA
2gil 1 P20340 98.15 3e-115 X-RAY
 2006-06-27 ASN A:137 A:149 133.0 0.831 T 53.1 55.9 133.0 0.831 0.0 HOH
 2.933
 ND2
 O
ASN B:137 B:149 132.0 0.825 T 63.9 46.6 NA NA NA
ASN C:137 C:149 136.0 0.85 T 52.6 49.5 NA NA NA
ASN D:137 D:149 131.0 0.819 T 56.1 58.7 NA NA NA
2e9s 1 Q9NRW1 92.59 3e-110 X-RAY
 2008-01-29 SER A:138 A:149 101.0 0.878 T 60.0 41.7 101.0 0.878 0.0 HOH
 2.822
 OG
 O
SER B:138 B:149 99.0 0.861 T 59.8 46.6 NA NA NA
SER C:138 C:149 99.0 0.861 T 55.9 48.5 NA NA NA
2fe4 1 Q9NRW1 92.59 3e-110 X-RAY
 2006-07-04 SER A:138 A:149 107.0 0.93 T 58.2 38.8 107.0 0.93 0.0 HOH
 2.735
 OG
 O
2ffq 1 Q9NRW1 92.59 3e-110 X-RAY
 2006-07-04 SER A:138 A:149 98.0 0.852 T 53.9 48.3 98.0 0.852 0.0 HOH
 2.830
 OG
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p20340-f1 1 P20340 98.56 3e-154 ASN A:149 A:149 144.0 0.9 T 48.9 52.9
af-q9nrw1-f1 1 Q9NRW1 89.42 2e-142 SER A:149 A:149 103.0 0.896 T 51.1 47.8
af-q9h0n0-f1 1 Q9H0N0 91.35 5e-138 ASN A:149 A:149 145.0 0.906 T 48.1 51.3
af-q53s08-f1 1 Q53S08 91.83 2e-137 ASN A:149 A:149 144.0 0.9 T 49.4 50.8