Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr11 | 73429856 | . | G | A | CCDS8223.1:NM_002869.4:c.263gCa>gTa_NP_002860.2:p.88A>V | Homo sapiens RAB6A, member RAS oncogene family (RAB6A), transcript variant 1, mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 4dkx | 1 | P20340 | 99.52 | 3e-155 |
X-RAY |
2012-10-17 | ALA | A:88 | A:88 | 1.0 | 0.009 | E | -145.4 | 146.6 | 1.0 | 0.009 | 0.0 |
HOH |
5.138 |
N |
O |
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| ALA | B:88 | B:88 | 1.0 | 0.009 | E | -146.8 | 144.8 | NA | NA | NA | |||||||||||||
| 3bbp | 1 | P20340 | 98.06 | 3e-150 |
X-RAY |
2008-02-05 | VAL | A:91 | A:88 | 1.0 | 0.006 | E | -146.5 | 142.2 | 1.0 | 0.006 | 0.0 | ||||||
| VAL | B:91 | B:88 | 1.0 | 0.006 | E | -145.7 | 143.1 | 1.0 | 0.006 | 0.0 | |||||||||||||
| VAL | C:91 | C:88 | 1.0 | 0.006 | E | -145.4 | 142.9 | NA | NA | NA | |||||||||||||
| 5lef | 1 | P20340 | 96.86 | 1e-135 |
X-RAY |
2017-11-15 | VAL | A:84 | A:88 | 0.0 | 0.0 | E | -131.9 | 140.7 | 0.0 | 0.0 | 0.0 |
HOH |
6.645 |
HG13 |
O |
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| VAL | B:84 | B:88 | 0.0 | 0.0 | E | -120.8 | 142.1 | 0.0 | 0.0 | 0.0 |
HOH |
7.032 |
HG13 |
O |
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| 3cwz | 1 | P20340 | 97.87 | 5e-135 |
X-RAY |
2008-11-18 | VAL | A:81 | A:88 | 1.0 | 0.006 | E | -145.4 | 148.9 | 1.0 | 0.006 | 0.0 | ||||||
| 1yzq | 1 | P20340 | 99.41 | 1e-123 |
X-RAY |
2005-07-26 | ALA | A:81 | A:88 | 0.0 | 0.0 | E | -142.1 | 148.4 | 0.0 | 0.0 | 0.0 |
HOH |
4.876 |
N |
O |
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| 2y8e | 1 | O18334 | 93.75 | 1e-122 |
X-RAY |
2011-07-06 | VAL | A:89 | A:87 | 0.0 | 0.0 | E | -123.6 | 130.6 | 0.0 | 0.0 | 0.0 |
HOH |
4.415 |
O |
O |
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| VAL | B:89 | B:87 | 0.0 | 0.0 | E | -127.5 | 134.0 | NA | NA | NA | |||||||||||||
| 2gil | 1 | P20340 | 98.15 | 3e-115 |
X-RAY |
2006-06-27 | VAL | A:76 | A:88 | 1.0 | 0.006 | E | -132.0 | 132.8 | 1.0 | 0.006 | 0.0 |
HOH |
4.301 |
O |
O |
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| VAL | B:76 | B:88 | 0.0 | 0.0 | E | -136.2 | 132.0 | NA | NA | NA | |||||||||||||
| VAL | C:76 | C:88 | 0.0 | 0.0 | E | -137.6 | 131.6 | NA | NA | NA | |||||||||||||
| VAL | D:76 | D:88 | 0.0 | 0.0 | E | -133.2 | 138.5 | NA | NA | NA | |||||||||||||
| 2e9s | 1 | Q9NRW1 | 92.59 | 3e-110 |
X-RAY |
2008-01-29 | VAL | A:77 | A:88 | 0.0 | 0.0 | E | -139.5 | 135.9 | 0.0 | 0.0 | 0.0 |
HOH |
4.972 |
N |
O |
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| VAL | B:77 | B:88 | 0.0 | 0.0 | E | -134.7 | 132.3 | NA | NA | NA | |||||||||||||
| VAL | C:77 | C:88 | 0.0 | 0.0 | E | -139.3 | 132.3 | NA | NA | NA | |||||||||||||
| 2fe4 | 1 | Q9NRW1 | 92.59 | 3e-110 |
X-RAY |
2006-07-04 | VAL | A:77 | A:88 | 0.0 | 0.0 | E | -141.0 | 129.8 | 0.0 | 0.0 | 0.0 |
HOH |
9.346 |
CG2 |
O |
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| 2ffq | 1 | Q9NRW1 | 92.59 | 3e-110 |
X-RAY |
2006-07-04 | VAL | A:77 | A:88 | 0.0 | 0.0 | E | -136.0 | 132.9 | 0.0 | 0.0 | 0.0 |
HOH |
4.638 |
N |
O |
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AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
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| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p20340-f1 | 1 | P20340 | 98.56 | 3e-154 | VAL | A:88 | A:88 | 0.0 | 0.0 | E | -134.5 | 135.4 | |
| af-q9nrw1-f1 | 1 | Q9NRW1 | 89.42 | 2e-142 | VAL | A:88 | A:88 | 0.0 | 0.0 | E | -137.9 | 135.6 | |
| af-q9h0n0-f1 | 1 | Q9H0N0 | 91.35 | 5e-138 | ALA | A:88 | A:88 | 0.0 | 0.0 | E | -145.5 | 151.7 | |
| af-q53s08-f1 | 1 | Q53S08 | 91.83 | 2e-137 | ALA | A:88 | A:88 | 0.0 | 0.0 | E | -147.1 | 152.7 | |