Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr11 | 73429871 | . | A | C | CCDS8223.1:NM_002869.4:c.248aTc>aGc_NP_002860.2:p.83I>S | Homo sapiens RAB6A, member RAS oncogene family (RAB6A), transcript variant 1, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
4dkx | 1 | P20340 | 99.52 | 3e-155 |
X-RAY |
2012-10-17 | ILE | A:83 | A:83 | 1.0 | 0.006 | H | -94.9 | 6.7 | 1.0 | 0.006 | 0.0 |
HOH |
4.424 |
CD1 |
O |
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ILE | B:83 | B:83 | 0.0 | 0.0 | H | -73.4 | -22.3 | NA | NA | NA | |||||||||||||
3bbp | 1 | P20340 | 98.06 | 3e-150 |
X-RAY |
2008-02-05 | ILE | A:86 | A:83 | 4.0 | 0.023 | H | -58.1 | -38.2 | 4.0 | 0.023 | 0.0 | ||||||
ILE | B:86 | B:83 | 4.0 | 0.023 | H | -58.4 | -39.2 | 4.0 | 0.023 | 0.0 | |||||||||||||
ILE | C:86 | C:83 | 4.0 | 0.023 | H | -58.1 | -39.1 | NA | NA | NA | |||||||||||||
5lef | 1 | P20340 | 96.86 | 1e-135 |
X-RAY |
2017-11-15 | ILE | A:79 | A:83 | 4.0 | 0.023 | H | -61.2 | -45.1 | 4.0 | 0.023 | 0.0 |
HOH |
3.219 |
HD12 |
O |
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ILE | B:79 | B:83 | 5.0 | 0.029 | H | -69.2 | -35.8 | 5.0 | 0.029 | 0.0 |
HOH |
6.378 |
N |
O |
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3cwz | 1 | P20340 | 97.87 | 5e-135 |
X-RAY |
2008-11-18 | ILE | A:76 | A:83 | 4.0 | 0.023 | H | -82.8 | -25.1 | 4.0 | 0.023 | 0.0 |
HOH |
7.792 |
CG1 |
O |
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1yzq | 1 | P20340 | 99.41 | 1e-123 |
X-RAY |
2005-07-26 | ILE | A:76 | A:83 | 2.0 | 0.011 | H | -74.7 | -32.5 | 2.0 | 0.011 | 0.0 |
HOH |
4.407 |
CD1 |
O |
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2y8e | 1 | O18334 | 93.75 | 1e-122 |
X-RAY |
2011-07-06 | ILE | A:84 | A:82 | 1.0 | 0.006 | H | -57.5 | -43.3 | 1.0 | 0.006 | 0.0 |
HOH |
3.012 |
O |
O |
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ILE | B:84 | B:82 | 2.0 | 0.011 | H | -59.8 | -45.7 | NA | NA | NA | |||||||||||||
2gil | 1 | P20340 | 98.15 | 3e-115 |
X-RAY |
2006-06-27 | ILE | A:71 | A:83 | 5.0 | 0.029 | H | -64.9 | -40.0 | 5.0 | 0.029 | 0.0 |
HOH |
2.577 |
O |
O |
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ILE | B:71 | B:83 | 4.0 | 0.023 | H | -62.2 | -45.5 | NA | NA | NA | |||||||||||||
ILE | C:71 | C:83 | 6.0 | 0.034 | H | -60.0 | -44.0 | NA | NA | NA | |||||||||||||
ILE | D:71 | D:83 | 3.0 | 0.017 | H | -62.0 | -51.1 | NA | NA | NA | |||||||||||||
2e9s | 1 | Q9NRW1 | 92.59 | 3e-110 |
X-RAY |
2008-01-29 | ILE | A:72 | A:83 | 3.0 | 0.017 | H | -62.6 | -42.3 | 3.0 | 0.017 | 0.0 |
HOH |
6.433 |
N |
O |
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ILE | B:72 | B:83 | 2.0 | 0.011 | H | -59.3 | -39.6 | NA | NA | NA | |||||||||||||
ILE | C:72 | C:83 | 1.0 | 0.006 | H | -73.9 | -42.9 | NA | NA | NA | |||||||||||||
2fe4 | 1 | Q9NRW1 | 92.59 | 3e-110 |
X-RAY |
2006-07-04 | ILE | A:72 | A:83 | 4.0 | 0.023 | H | -67.5 | -41.0 | 4.0 | 0.023 | 0.0 |
HOH |
6.645 |
C |
O |
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2ffq | 1 | Q9NRW1 | 92.59 | 3e-110 |
X-RAY |
2006-07-04 | ILE | A:72 | A:83 | 3.0 | 0.017 | H | -67.3 | -49.6 | 3.0 | 0.017 | 0.0 |
HOH |
6.591 |
O |
O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p20340-f1 | 1 | P20340 | 98.56 | 3e-154 | ILE | A:83 | A:83 | 3.0 | 0.017 | H | -64.0 | -51.1 | |
af-q9nrw1-f1 | 1 | Q9NRW1 | 89.42 | 2e-142 | ILE | A:83 | A:83 | 2.0 | 0.011 | H | -65.3 | -50.0 | |
af-q9h0n0-f1 | 1 | Q9H0N0 | 91.35 | 5e-138 | ILE | A:83 | A:83 | 2.0 | 0.011 | H | -63.2 | -44.3 | |
af-q53s08-f1 | 1 | Q53S08 | 91.83 | 2e-137 | ILE | A:83 | A:83 | 1.0 | 0.006 | H | -65.4 | -45.1 |