Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr11 85968585 . A C CCDS8273.1:NM_003797.3:c.581aAt>aCt_NP_003788.2:p.194N>T Homo sapiens embryonic ectoderm development (EED), transcript variant 1, mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6c23 4 O75530 100.0 0.0 EM
2018-01-24 ASN D:194 L:194 5.0 0.031 -78.0 -11.6 2.0 0.013 0.018 L:Q92833:0.019
6c24 5 O75530 100.0 0.0 EM
2018-01-24 ASN E:194 L:194 6.0 0.037 -74.5 -6.9 2.0 0.013 0.024 B:Q92833:0.025
6wkr 3 O75530 100.0 0.0 EM
2021-02-03 ASN C:194 L:194 13.0 0.081 E -127.6 -14.9 9.0 0.056 0.025 F:Q92833:0.025
7kso 2 O75530 100.0 0.0 EM
2021-02-03 ASN B:194 B:194 7.0 0.044 E -99.3 -34.4 7.0 0.044 0.0
7ksr 4 O75530 100.0 0.0 EM
2021-02-03 ASN D:194 B:194 7.0 0.044 E -95.3 -41.2 7.0 0.044 0.0
7ktp 2 O75530 100.0 0.0 EM
2021-02-03 ASN B:194 B:194 7.0 0.044 E -98.7 -38.5 7.0 0.044 0.0
5wg6 2 O75530 100.0 0.0 X-RAY
2018-06-27 ASN B:195 B:194 1.0 0.006 E -108.0 -16.1 1.0 0.006 0.0
ASN D:195 D:194 3.0 0.019 E -109.2 -13.9 NA NA NA
3jpx 1 O75530 100.0 0.0 X-RAY
2009-10-20 ASN A:155 A:194 5.0 0.031 E -89.3 -24.4 0.0 0.0 0.031 B:None:0.031
HOH
2.609
ND2
O
3jzg 1 O75530 100.0 0.0 X-RAY
2009-12-15 ASN A:155 A:194 5.0 0.031 E -89.7 -27.4 0.0 0.0 0.031 B:None:0.031
HOH
2.651
ND2
O
3jzh 1 O75530 100.0 0.0 X-RAY
2009-12-15 ASN A:155 A:194 5.0 0.031 E -93.3 -22.8 0.0 0.0 0.031 B:None:0.031
HOH
2.614
ND2
O
7kxt 1 O75530 100.0 0.0 X-RAY
2021-02-24 ASN A:155 A:194 3.0 0.019 E -97.0 -19.3 3.0 0.019 0.0 UNX
UNX
UNX
HOH
4.997
9.709
9.830
2.626
OD1
N
O
OD1
UNK
UNK
UNK
O
ASN B:155 B:194 3.0 0.019 E -98.0 -22.7 NA NA NA
5wp3 1 O75530 100.0 0.0 X-RAY
2017-09-13 ASN A:121 A:194 8.0 0.05 E -81.7 -47.1 8.0 0.05 0.0 UNX
UNX
UNX
8.088
8.552
5.662
N
N
OD1
UNK
UNK
UNK
5h13 1 O75530 99.19 0.0 X-RAY
2017-01-25 ASN A:129 A:194 13.0 0.081 E -93.8 -25.6 13.0 0.081 0.0 LQA
HOH
3.201
3.659
OD1
O
C12
O
3jzn 1 O75530 100.0 0.0 X-RAY
2009-12-15 ASN A:119 A:194 11.0 0.069 E -90.6 -30.1 11.0 0.069 0.0 HOH
2.567
ND2
O
3k26 1 O75530 100.0 0.0 X-RAY
2009-12-15 ASN A:119 A:194 8.0 0.05 E -102.0 -21.1 1.0 0.006 0.044 B:None:0.044
HOH
2.726
ND2
O
3k27 1 O75530 100.0 0.0 X-RAY
2009-12-15 ASN A:119 A:194 5.0 0.031 E -99.8 -20.3 0.0 0.0 0.031 B:None:0.031
HOH
2.605
ND2
O
6sfb 1 O75530 100.0 0.0 X-RAY
2019-09-25 ASN A:119 A:194 8.0 0.05 E -94.4 -25.9 8.0 0.05 0.0 L9K
HOH
2.937
2.980
OD1
ND2
N1
O
ASN B:119 B:194 10.0 0.062 E -92.5 -26.6 NA NA NA
6sfc 1 O75530 100.0 0.0 X-RAY
2019-09-25 ASN A:119 A:194 9.0 0.056 E -88.0 -32.3 9.0 0.056 0.0 L9W
HOH
2.882
3.050
OD1
ND2
N4
O
ASN B:119 B:194 12.0 0.075 E -87.9 -31.4 NA NA NA
6yvi 1 O75530 100.0 0.0 X-RAY
2021-05-12 ASN A:119 A:194 9.0 0.056 E -90.7 -30.0 9.0 0.056 0.0 L9W
HOH
2.902
4.714
OD1
O
N4
O
ASN B:119 B:194 10.0 0.062 E -89.2 -30.4 NA NA NA
6yvj 1 O75530 100.0 0.0 X-RAY
2021-05-12 ASN A:119 A:194 8.0 0.05 E -91.5 -25.6 8.0 0.05 0.0 L9W
HOH
3.008
3.007
OD1
ND2
N4
O
ASN B:119 B:194 10.0 0.062 E -91.7 -25.8 NA NA NA
7p3c 1 O75530 100.0 0.0 X-RAY
2021-12-08 ASN A:119 A:194 7.0 0.044 E -92.8 -25.7 7.0 0.044 0.0 L9W
HOH
2.945
3.033
OD1
ND2
N4
O
ASN B:119 B:194 8.0 0.05 E -91.9 -26.1 NA NA NA
7p3g 1 O75530 100.0 0.0 X-RAY
2021-12-08 ASN A:119 A:194 10.0 0.062 E -92.1 -29.7 10.0 0.062 0.0 L9W
HOH
2.896
3.350
OD1
ND2
N4
O
ASN B:119 B:194 10.0 0.062 E -90.6 -29.7 NA NA NA
7p3j 1 O75530 100.0 0.0 X-RAY
2021-12-08 ASN A:119 A:194 8.0 0.05 E -90.5 -27.6 8.0 0.05 0.0 L9W
HOH
2.935
2.853
OD1
ND2
N4
O
ASN B:119 B:194 12.0 0.075 E -87.5 -26.6 NA NA NA
5gsa 1 O75530 100.0 0.0 X-RAY
2017-02-01 ASN A:120 A:194 8.0 0.05 E -96.6 -38.9 8.0 0.05 0.0 73K
HOH
2.988
3.244
OD1
ND2
C12
O
ASN B:120 B:194 9.0 0.056 E -90.3 -34.6 NA NA NA
5h14 1 O75530 100.0 0.0 X-RAY
2017-01-25 ASN A:120 A:194 15.0 0.094 E -91.9 -24.3 15.0 0.094 0.0 LQB
HOH
3.401
2.652
OD1
OD1
C12
O
ASN B:120 B:194 15.0 0.094 E -88.0 -25.4 NA NA NA
5h15 1 O75530 100.0 0.0 X-RAY
2017-01-25 ASN A:120 A:194 20.0 0.125 E -91.0 -24.3 20.0 0.125 0.0 LQD
HOH
3.446
2.681
OD1
OD1
C11
O
ASN B:120 B:194 19.0 0.119 E -94.3 -22.7 NA NA NA
5h17 1 O75530 100.0 0.0 X-RAY
2017-01-25 ASN A:120 A:194 16.0 0.1 E -89.2 -29.0 16.0 0.1 0.0 LQE
HOH
3.099
4.495
OD1
O
C16
O
5h19 1 O75530 100.0 0.0 X-RAY
2017-01-25 ASN A:120 A:194 8.0 0.05 E -87.7 -30.0 8.0 0.05 0.0 LQF
HOH
2.999
2.976
OD1
ND2
C10
O
5h24 1 O75530 100.0 0.0 X-RAY
2017-01-25 ASN A:120 A:194 11.0 0.069 E -94.2 -33.6 11.0 0.069 0.0 LQG
HOH
2.884
2.980
OD1
ND2
C5
O
ASN B:120 B:194 9.0 0.056 E -95.7 -32.7 NA NA NA
5h25 1 O75530 100.0 0.0 X-RAY
2017-01-25 ASN A:120 A:194 16.0 0.1 E -91.7 -28.6 16.0 0.1 0.0 LQH
3.325
OD1
C13
ASN B:120 B:194 12.0 0.075 E -92.0 -29.3 NA NA NA
5ttw 1 O75530 100.0 0.0 X-RAY
2017-01-11 ASN A:120 A:194 5.0 0.031 E -95.2 -25.1 1.0 0.006 0.025 B:None:0.025
UNX
UNX
HOH
4.874
4.817
2.678
O
O
OD1
UNK
UNK
O
ASN C:120 C:194 4.0 0.025 E -97.2 -23.7 NA NA NA
5u5h 1 O75530 100.0 0.0 X-RAY
2017-01-11 ASN A:120 A:194 17.0 0.106 E -92.5 -26.7 17.0 0.106 0.0 7VV
HOH
2.526
2.698
OD1
OD1
H29
O
5u5k 1 O75530 100.0 0.0 X-RAY
2017-01-11 ASN A:120 A:194 17.0 0.106 E -89.8 -33.0 17.0 0.106 0.0 7VY
HOH
3.284
2.702
OD1
OD1
C13
O
5u5t 1 O75530 100.0 0.0 X-RAY
2017-01-11 ASN A:120 A:194 19.0 0.119 E -91.1 -25.1 19.0 0.119 0.0 7W7
HOH
3.001
2.726
OD1
OD1
N19
O
ASN B:120 B:194 20.0 0.125 E -91.5 -28.4 NA NA NA
5u62 1 O75530 100.0 0.0 X-RAY
2017-01-11 ASN A:120 A:194 15.0 0.094 E -89.6 -23.9 15.0 0.094 0.0 7WD
HOH
3.370
2.661
OD1
OD1
C16
O
ASN B:120 B:194 19.0 0.119 E -88.1 -25.8 NA NA NA
6lo2 1 O75530 100.0 0.0 X-RAY
2021-07-07 ASN A:120 A:194 8.0 0.05 E -94.2 -26.7 8.0 0.05 0.0 EJU
HOH
2.978
3.024
OD1
ND2
N27
O
ASN B:120 B:194 9.0 0.056 E -89.4 -25.6 NA NA NA
6v3x 1 O75530 100.0 0.0 X-RAY
2021-05-26 ASN A:120 A:194 4.0 0.025 E -92.8 -24.5 1.0 0.006 0.019 B:None:0.019
HOH
2.666
OD1
O
4x3e 1 O75530 100.0 0.0 X-RAY
2015-01-21 ASN A:120 A:194 4.0 0.025 E -99.4 -19.7 1.0 0.006 0.019 B:None:0.019
HOH
2.816
OD1
O
5hyn 2 O75530 100.0 0.0 X-RAY
2016-05-11 ASN B:120 B:194 5.0 0.031 E -74.5 -37.4 1.0 0.006 0.025 E:None:0.025
ASN G:120 G:194 4.0 0.025 E -73.9 -36.8 NA NA NA
ASN L:120 L:194 5.0 0.031 E -77.2 -34.0 NA NA NA
ASN Q:120 R:194 4.0 0.025 E -76.7 -35.7 NA NA NA
5ls6 2 O75530 100.0 0.0 X-RAY
2017-02-22 ASN B:120 B:194 5.0 0.031 E -86.5 -17.9 1.0 0.006 0.025 M:None:0.025
ASN E:120 E:194 5.0 0.031 E -84.8 -22.3 NA NA NA
ASN H:120 H:194 4.0 0.025 E -96.1 -24.5 NA NA NA
ASN K:120 K:194 5.0 0.031 E -97.0 -20.5 NA NA NA
5u69 1 O75530 100.0 0.0 X-RAY
2017-03-15 ASN A:122 A:194 18.0 0.113 E -95.9 -22.8 18.0 0.113 0.0 LQD
HOH
3.801
2.703
OD1
OD1
C11
O
5u6d 1 O75530 100.0 0.0 X-RAY
2017-03-15 ASN A:122 A:194 19.0 0.119 E -95.2 -25.6 19.0 0.119 0.0 7XG
HOH
3.423
2.682
CB
OD1
F32
O
5u8a 1 O75530 100.0 0.0 X-RAY
2017-03-15 ASN A:122 A:194 18.0 0.113 E -96.6 -23.7 18.0 0.113 0.0 82D
HOH
3.445
2.717
CB
OD1
F23
O
5u8f 1 O75530 100.0 0.0 X-RAY
2017-03-15 ASN A:122 A:194 18.0 0.113 E -93.9 -25.8 18.0 0.113 0.0 82G
HOH
3.444
2.675
CB
OD1
F28
O
3iiw 1 O75530 100.0 0.0 X-RAY
2009-09-15 ASN A:118 A:194 5.0 0.031 E -95.5 -21.5 1.0 0.006 0.025 B:None:0.025
HOH
2.676
OD1
O
5k0m 1 O75530 100.0 0.0 X-RAY
2017-01-25 ASN A:125 A:194 19.0 0.119 E -97.3 -25.2 19.0 0.119 0.0 6PU
HOH
3.426
2.661
CB
OD1
F
O
5wuk 1 O75530 99.73 0.0 X-RAY
2017-05-03 ASN A:119 A:194 10.0 0.062 E -92.4 -34.8 10.0 0.062 0.0 GOL
73K
HOH
6.352
2.969
6.239
ND2
OD1
OD1
O3
N8
O
6u4y 2 O75530 100.0 0.0 X-RAY
2020-07-08 ASN D:119 D:194 11.0 0.069 E -104.8 -21.6 11.0 0.069 0.0
ASN E:119 E:194 9.0 0.056 E -98.3 -13.8 9.0 0.056 0.0
ASN F:119 F:194 9.0 0.056 E -103.1 -22.2 9.0 0.056 0.0
6w7f 1 O75530 99.73 0.0 X-RAY
2020-07-08 ASN A:121 A:194 10.0 0.062 E -93.2 -27.4 10.0 0.062 0.0 Q3D
GOL
HOH
1.846
6.316
2.937
OD1
N
ND2
H8
HO3
O
6w7g 1 O75530 99.73 0.0 X-RAY
2020-07-08 ASN A:121 A:194 10.0 0.062 E -89.8 -27.7 10.0 0.062 0.0 Q3A
HOH
1.918
3.028
OD1
ND2
H6
O
7msb 1 O75530 99.73 0.0 X-RAY
2021-10-20 ASN A:121 A:194 8.0 0.05 E -94.8 -26.4 8.0 0.05 0.0 ZNG
HOH
2.922
2.895
OD1
ND2
N2
O
7msd 1 O75530 99.73 0.0 X-RAY
2021-10-20 ASN A:121 A:194 10.0 0.062 E -88.5 -28.5 10.0 0.062 0.0 ZMY
HOH
1.938
3.050
OD1
ND2
H10
O
3iiy 1 O75530 99.73 0.0 X-RAY
2009-09-15 ASN A:118 A:194 4.0 0.025 E -93.9 -30.2 0.0 0.0 0.025 B:None:0.025
HOH
2.660
OD1
O
3ij0 1 O75530 99.73 0.0 X-RAY
2009-09-15 ASN A:118 A:194 4.0 0.025 E -89.5 -29.1 0.0 0.0 0.025 B:None:0.025
HOH
2.572
OD1
O
3ij1 1 O75530 99.73 0.0 X-RAY
2009-09-15 ASN A:118 A:194 5.0 0.031 E -90.5 -26.7 0.0 0.0 0.031 B:None:0.031
HOH
2.558
OD1
O
3ijc 1 O75530 99.73 0.0 X-RAY
2009-09-15 ASN A:118 A:194 6.0 0.037 E -90.9 -23.1 6.0 0.037 0.0 NDS
HOH
3.408
2.755
OD1
OD1
C1
O
2qxv 1 Q921E6 100.0 0.0 X-RAY
2007-08-28 ASN A:114 A:193 10.0 0.062 E -93.5 -16.0 10.0 0.062 0.0 HOH
2.827
OD1
O
4w2r 2 O75530 100.0 0.0 X-RAY
2017-12-27 ASN C:115 E:180 3.0 0.019 E -81.8 -35.2 NA NA NA
ASN D:115 F:180 3.0 0.019 E -82.5 -31.9 3.0 0.019 0.0
5ij7 2 O75530 100.0 0.0 X-RAY
2016-05-04 ASN C:115 E:180 2.0 0.013 E -93.3 -24.3 2.0 0.013 0.0 HOH
7.296
O
O
ASN D:115 F:180 1.0 0.006 E -91.8 -25.2 NA NA NA
5ij8 2 O75530 100.0 0.0 X-RAY
2016-05-04 ASN C:115 E:180 3.0 0.019 E -86.3 -29.6 NA NA NA
ASN D:115 F:180 4.0 0.025 E -88.6 -26.8 4.0 0.025 0.0
6b3w 2 O75530 100.0 0.0 X-RAY
2017-12-27 ASN C:115 E:180 3.0 0.019 E -94.9 -24.3 NA NA NA
ASN D:115 F:180 2.0 0.013 E -98.8 -13.9 2.0 0.013 0.0
6v3y 1 O75530 100.0 0.0 X-RAY
2021-05-26 ASN A:114 A:194 4.0 0.025 E -95.8 -21.4 0.0 0.0 0.025 B:None:0.025
HOH
2.660
OD1
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o75530-f1 1 O75530 100.0 0.0 ASN A:194 A:194 3.0 0.019 E -89.1 -35.4