Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr11 85988960 . A C CCDS8273.1:NM_003797.3:c.1126Atg>Ctg_NP_003788.2:p.376M>L Homo sapiens embryonic ectoderm development (EED), transcript variant 1, mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6c23 4 O75530 100.0 0.0 EM
2018-01-24 MET D:376 L:376 5.0 0.027 E -146.8 158.6 5.0 0.027 0.0
6c24 5 O75530 100.0 0.0 EM
2018-01-24 MET E:376 L:376 0.0 0.0 E -137.6 146.4 0.0 0.0 0.0
6wkr 3 O75530 100.0 0.0 EM
2021-02-03 MET C:376 L:376 14.0 0.076 E -133.9 163.2 14.0 0.076 0.0
7kso 2 O75530 100.0 0.0 EM
2021-02-03 MET B:376 B:376 1.0 0.005 E -151.6 -173.3 1.0 0.005 0.0
7ksr 4 O75530 100.0 0.0 EM
2021-02-03 MET D:376 B:376 0.0 0.0 E -151.2 -174.1 0.0 0.0 0.0
7ktp 2 O75530 100.0 0.0 EM
2021-02-03 MET B:376 B:376 1.0 0.005 E -151.4 -173.6 1.0 0.005 0.0
5wg6 2 O75530 100.0 0.0 X-RAY
2018-06-27 MET B:377 B:376 5.0 0.027 E -105.2 152.1 5.0 0.027 0.0
MET D:377 D:376 36.0 0.195 -76.6 360.0 NA NA NA
3jpx 1 O75530 100.0 0.0 X-RAY
2009-10-20 MET A:337 A:376 13.0 0.07 E -140.4 168.9 13.0 0.07 0.0 HOH
3.898
CE
O
3jzg 1 O75530 100.0 0.0 X-RAY
2009-12-15 MET A:337 A:376 13.0 0.07 E -150.3 166.9 13.0 0.07 0.0 HOH
3.386
CE
O
3jzh 1 O75530 100.0 0.0 X-RAY
2009-12-15 MET A:337 A:376 17.0 0.092 E -150.0 166.5 17.0 0.092 0.0 HOH
3.418
CE
O
7kxt 1 O75530 100.0 0.0 X-RAY
2021-02-24 MET A:337 A:376 0.0 0.0 E -139.8 146.4 0.0 0.0 0.0 XB7
UNX
UNX
HOH
8.862
7.364
9.350
6.258
N
O
O
CE
C4
UNK
UNK
O
MET B:337 B:376 17.0 0.092 E -141.2 145.5 NA NA NA
5wp3 1 O75530 100.0 0.0 X-RAY
2017-09-13 MET A:303 A:376 2.0 0.011 E -123.0 139.6 2.0 0.011 0.0
5h13 1 O75530 99.19 0.0 X-RAY
2017-01-25 MET A:311 A:376 0.0 0.0 E -129.2 145.4 0.0 0.0 0.0 HOH
6.403
N
O
3jzn 1 O75530 100.0 0.0 X-RAY
2009-12-15 MET A:301 A:376 13.0 0.07 E -145.2 160.1 13.0 0.07 0.0 HOH
4.407
SD
O
3k26 1 O75530 100.0 0.0 X-RAY
2009-12-15 MET A:301 A:376 17.0 0.092 E -146.7 161.5 17.0 0.092 0.0 HOH
3.547
CE
O
3k27 1 O75530 100.0 0.0 X-RAY
2009-12-15 MET A:301 A:376 1.0 0.005 E -145.4 164.6 1.0 0.005 0.0 HOH
3.682
CE
O
6sfb 1 O75530 100.0 0.0 X-RAY
2019-09-25 MET A:301 A:376 24.0 0.13 E -132.5 146.9 24.0 0.13 0.0 HOH
5.119
CE
O
MET B:301 B:376 27.0 0.146 E -134.7 143.3 NA NA NA
6sfc 1 O75530 100.0 0.0 X-RAY
2019-09-25 MET A:301 A:376 20.0 0.108 E -125.4 142.7 20.0 0.108 0.0 HOH
6.755
O
O
MET B:301 B:376 26.0 0.141 E -140.3 146.0 NA NA NA
6yvi 1 O75530 100.0 0.0 X-RAY
2021-05-12 MET A:301 A:376 16.0 0.086 E -133.9 145.3 16.0 0.086 0.0 HOH
3.940
CE
O
MET B:301 B:376 30.0 0.162 E -134.1 146.8 NA NA NA
6yvj 1 O75530 100.0 0.0 X-RAY
2021-05-12 MET A:301 A:376 18.0 0.097 E -128.4 145.1 18.0 0.097 0.0 HOH
3.233
SD
O
MET B:301 B:376 27.0 0.146 E -136.3 148.7 NA NA NA
7p3c 1 O75530 100.0 0.0 X-RAY
2021-12-08 MET A:301 A:376 28.0 0.151 E -135.9 146.6 28.0 0.151 0.0 HOH
3.860
CG
O
MET B:301 B:376 28.0 0.151 E -134.8 146.2 NA NA NA
7p3g 1 O75530 100.0 0.0 X-RAY
2021-12-08 MET A:301 A:376 22.0 0.119 E -135.2 142.7 22.0 0.119 0.0 HOH
6.415
CE
O
MET B:301 B:376 29.0 0.157 E -137.2 150.2 NA NA NA
7p3j 1 O75530 100.0 0.0 X-RAY
2021-12-08 MET A:301 A:376 18.0 0.097 E -132.2 144.8 18.0 0.097 0.0 HOH
3.374
CE
O
MET B:301 B:376 29.0 0.157 E -132.2 144.2 NA NA NA
5gsa 1 O75530 100.0 0.0 X-RAY
2017-02-01 MET A:302 A:376 1.0 0.005 E -119.9 145.8 1.0 0.005 0.0 HOH
7.121
O
O
MET B:302 B:376 1.0 0.005 E -132.4 138.8 NA NA NA
5h14 1 O75530 100.0 0.0 X-RAY
2017-01-25 MET A:302 A:376 0.0 0.0 E -133.2 143.8 0.0 0.0 0.0 HOH
6.710
CE
O
MET B:302 B:376 0.0 0.0 E -130.4 139.7 NA NA NA
5h15 1 O75530 100.0 0.0 X-RAY
2017-01-25 MET A:302 A:376 1.0 0.005 E -128.2 144.0 1.0 0.005 0.0 HOH
5.896
CE
O
MET B:302 B:376 0.0 0.0 E -125.5 141.0 NA NA NA
5h17 1 O75530 100.0 0.0 X-RAY
2017-01-25 MET A:302 A:376 1.0 0.005 E -127.5 150.2 1.0 0.005 0.0 HOH
6.809
CE
O
5h19 1 O75530 100.0 0.0 X-RAY
2017-01-25 MET A:302 A:376 2.0 0.011 E -128.5 141.9 2.0 0.011 0.0 HOH
6.140
CE
O
5h24 1 O75530 100.0 0.0 X-RAY
2017-01-25 MET A:302 A:376 0.0 0.0 E -128.0 139.3 0.0 0.0 0.0 HOH
6.987
O
O
MET B:302 B:376 1.0 0.005 E -132.9 136.6 NA NA NA
5h25 1 O75530 100.0 0.0 X-RAY
2017-01-25 MET A:302 A:376 2.0 0.011 E -123.9 146.6 2.0 0.011 0.0
MET B:302 B:376 0.0 0.0 E -130.4 146.1 NA NA NA
5ttw 1 O75530 100.0 0.0 X-RAY
2017-01-11 MET A:302 A:376 0.0 0.0 E -137.7 150.4 0.0 0.0 0.0 HOH
5.548
CE
O
MET C:302 C:376 0.0 0.0 E -133.7 147.7 NA NA NA
5u5h 1 O75530 100.0 0.0 X-RAY
2017-01-11 MET A:302 A:376 0.0 0.0 E -129.4 146.0 0.0 0.0 0.0 HOH
3.957
CE
O
5u5k 1 O75530 100.0 0.0 X-RAY
2017-01-11 MET A:302 A:376 4.0 0.022 E -131.5 145.8 4.0 0.022 0.0 HOH
5.828
CE
O
5u5t 1 O75530 100.0 0.0 X-RAY
2017-01-11 MET A:302 A:376 0.0 0.0 E -128.8 145.7 0.0 0.0 0.0 HOH
4.038
CE
O
MET B:302 B:376 0.0 0.0 E -127.5 143.1 NA NA NA
5u62 1 O75530 100.0 0.0 X-RAY
2017-01-11 MET A:302 A:376 0.0 0.0 E -129.3 145.7 0.0 0.0 0.0 HOH
3.710
CE
O
MET B:302 B:376 0.0 0.0 E -130.0 142.1 NA NA NA
6lo2 1 O75530 100.0 0.0 X-RAY
2021-07-07 MET A:302 A:376 0.0 0.0 E -130.9 145.3 0.0 0.0 0.0 HOH
6.405
CE
O
MET B:302 B:376 0.0 0.0 E -130.7 141.7 NA NA NA
6v3x 1 O75530 100.0 0.0 X-RAY
2021-05-26 MET A:302 A:376 12.0 0.065 E -137.4 149.3 12.0 0.065 0.0 HOH
3.709
CG
O
4x3e 1 O75530 100.0 0.0 X-RAY
2015-01-21 MET A:302 A:376 15.0 0.081 E -139.3 163.0 15.0 0.081 0.0 HOH
5.973
CE
O
5hyn 2 O75530 100.0 0.0 X-RAY
2016-05-11 MET B:302 B:376 2.0 0.011 E -134.4 143.6 2.0 0.011 0.0
MET G:302 G:376 1.0 0.005 E -130.1 141.6 NA NA NA
MET L:302 L:376 1.0 0.005 E -125.2 140.6 NA NA NA
MET Q:302 R:376 0.0 0.0 E -131.5 145.3 NA NA NA
5ls6 2 O75530 100.0 0.0 X-RAY
2017-02-22 MET B:302 B:376 2.0 0.011 E -131.6 146.2 2.0 0.011 0.0
MET E:302 E:376 1.0 0.005 E -128.5 145.3 NA NA NA
MET H:302 H:376 1.0 0.005 E -126.0 135.4 NA NA NA
MET K:302 K:376 2.0 0.011 E -129.6 145.6 NA NA NA
5u69 1 O75530 100.0 0.0 X-RAY
2017-03-15 MET A:304 A:376 7.0 0.038 E -139.8 153.8 7.0 0.038 0.0 HOH
3.338
CG
O
5u6d 1 O75530 100.0 0.0 X-RAY
2017-03-15 MET A:304 A:376 10.0 0.054 E -135.9 153.4 10.0 0.054 0.0 HOH
5.983
CE
O
5u8a 1 O75530 100.0 0.0 X-RAY
2017-03-15 MET A:304 A:376 14.0 0.076 E -139.0 154.1 14.0 0.076 0.0 HOH
5.714
N
O
5u8f 1 O75530 100.0 0.0 X-RAY
2017-03-15 MET A:304 A:376 12.0 0.065 E -137.9 152.5 12.0 0.065 0.0 HOH
3.498
CG
O
3iiw 1 O75530 100.0 0.0 X-RAY
2009-09-15 MET A:300 A:376 22.0 0.119 E -141.3 161.6 22.0 0.119 0.0 HOH
3.314
SD
O
5k0m 1 O75530 100.0 0.0 X-RAY
2017-01-25 MET A:307 A:376 16.0 0.086 E -134.0 148.6 16.0 0.086 0.0 HOH
3.275
SD
O
5wuk 1 O75530 99.73 0.0 X-RAY
2017-05-03 MET A:301 A:376 1.0 0.005 E -128.2 143.1 1.0 0.005 0.0 HOH
5.612
CG
O
6u4y 2 O75530 100.0 0.0 X-RAY
2020-07-08 MET D:301 D:376 1.0 0.005 E -129.3 148.4 1.0 0.005 0.0
MET E:301 E:376 1.0 0.005 E -136.4 146.9 1.0 0.005 0.0
MET F:301 F:376 2.0 0.011 E -125.5 154.7 2.0 0.011 0.0
6w7f 1 O75530 99.73 0.0 X-RAY
2020-07-08 MET A:303 A:376 25.0 0.135 E -135.9 152.3 25.0 0.135 0.0 HOH
6.661
SD
O
6w7g 1 O75530 99.73 0.0 X-RAY
2020-07-08 MET A:303 A:376 13.0 0.07 E -136.9 153.5 13.0 0.07 0.0 HOH
3.784
CG
O
7msb 1 O75530 99.73 0.0 X-RAY
2021-10-20 MET A:303 A:376 8.0 0.043 E -136.7 155.0 8.0 0.043 0.0 HOH
3.754
SD
O
7msd 1 O75530 99.73 0.0 X-RAY
2021-10-20 MET A:303 A:376 16.0 0.086 E -134.2 153.5 16.0 0.086 0.0 HOH
5.944
CE
O
3iiy 1 O75530 99.73 0.0 X-RAY
2009-09-15 MET A:300 A:376 1.0 0.005 E -138.5 168.5 1.0 0.005 0.0 HOH
7.009
O
O
3ij0 1 O75530 99.73 0.0 X-RAY
2009-09-15 MET A:300 A:376 25.0 0.135 E -138.0 168.7 25.0 0.135 0.0 HOH
6.855
O
O
3ij1 1 O75530 99.73 0.0 X-RAY
2009-09-15 MET A:300 A:376 22.0 0.119 E -143.0 163.0 22.0 0.119 0.0 HOH
3.638
CE
O
3ijc 1 O75530 99.73 0.0 X-RAY
2009-09-15 MET A:300 A:376 1.0 0.005 E -138.6 152.5 1.0 0.005 0.0 HOH
3.761
CE
O
2qxv 1 Q921E6 100.0 0.0 X-RAY
2007-08-28 MET A:296 A:368 6.0 0.032 E -133.8 140.3 6.0 0.032 0.0 HOH
4.870
SD
O
4w2r 2 O75530 100.0 0.0 X-RAY
2017-12-27 MET C:297 E:362 11.0 0.059 E -146.5 158.4 NA NA NA
MET D:297 F:362 8.0 0.043 E -139.2 152.3 8.0 0.043 0.0
5ij7 2 O75530 100.0 0.0 X-RAY
2016-05-04 MET C:297 E:362 11.0 0.059 E -121.4 151.4 11.0 0.059 0.0
MET D:297 F:362 16.0 0.086 E -119.2 144.7 NA NA NA
5ij8 2 O75530 100.0 0.0 X-RAY
2016-05-04 MET C:297 E:362 15.0 0.081 E -121.5 153.6 NA NA NA
MET D:297 F:362 14.0 0.076 E -121.2 153.3 14.0 0.076 0.0
6b3w 2 O75530 100.0 0.0 X-RAY
2017-12-27 MET C:297 E:362 15.0 0.081 E -117.8 142.6 NA NA NA
MET D:297 F:362 7.0 0.038 E -119.4 133.6 7.0 0.038 0.0
6v3y 1 O75530 100.0 0.0 X-RAY
2021-05-26 MET A:296 A:376 14.0 0.076 E -142.4 160.9 14.0 0.076 0.0 HOH
4.113
CE
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o75530-f1 1 O75530 100.0 0.0 MET A:376 A:376 0.0 0.0 E -124.6 136.6