Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr12 10758897 . G A CCDS8628.1:NM_018048.3:c.424Cac>Tac_NP_060518.1:p.142H>Y Homo sapiens mago homolog B, exon junction complex core component (MAGOHB), transcript variant 1, mRNA.
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5xjc 38 Q96A72 100.0 3e-108 EM
 2017-07-05 HIS VA:142 v:142 126.0 0.646 H -77.1 -30.3 20.0 0.103 0.543 WA:Q9Y5S9:0.544
5yzg 30 Q96A72 100.0 3e-108 EM
 2018-08-08 HIS GA:142 v:142 125.0 0.641 H -77.1 -30.3 20.0 0.103 0.538 HA:Q9Y5S9:0.538
6icz 1 Q96A72 100.0 3e-108 EM
 2019-03-13 HIS A:142 v:140 78.0 NA H -77.2 -30.3 35.0 NA NA B:Q9Y5S9:NA
2hyi 2 P61326 98.63 4e-105 X-RAY
 2006-08-15 HIS C:140 A:140 126.0 0.646 H -77.1 -30.3 20.0 0.103 0.543 D:Q9Y5S9:0.544
 HOH
 2.874
 O
 O
HIS G:140 G:140 123.0 0.631 H -80.0 -25.2 NA NA NA
2j0q 2 P61326 98.63 4e-105 X-RAY
 2006-08-30 HIS C:140 C:140 129.0 0.662 H -89.8 -8.5 16.0 0.082 0.58 D:Q9Y5S9:0.579
HIS F:140 F:140 130.0 0.667 H -88.0 -9.0 NA NA NA
2j0s 2 P61326 98.63 4e-105 X-RAY
 2006-09-06 HIS B:140 C:140 134.0 0.687 H -76.1 -37.2 12.0 0.062 0.625 C:Q9Y5S9:0.626
 HOH
 2.925
 O
 O
2xb2 2 P61326 98.63 4e-105 X-RAY
 2010-05-12 HIS B:140 C:140 130.0 0.667 H -89.8 -23.1 NA NA NA
HIS L:140 Y:140 128.0 0.656 H -91.5 -24.0 15.0 0.077 0.579 M:Q9Y5S9:0.579
3ex7 1 P61326 98.63 4e-105 X-RAY
 2008-12-09 HIS A:140 A:140 130.0 0.667 H -85.6 -24.0 17.0 0.087 0.58 B:Q9Y5S9:0.579
 HOH
 2.703
 NE2
 O
HIS E:140 E:140 120.0 0.615 H -79.0 -23.1 NA NA NA
7a5p 34 P61326 98.63 4e-105 EM
 2020-10-14 HIS RA:140 v:142 79.0 NA H -78.4 -27.9 37.0 NA NA SA:Q9Y5S9:NA
6qdv 6 Q96A72 100.0 6e-105 EM
 2019-02-20 HIS F:138 9:142 128.0 0.656 H -77.1 -30.3 22.0 0.113 0.543 E:Q9Y5S9:0.544
1p27 1 P61326 100.0 2e-104 X-RAY
 2003-08-19 HIS A:139 A:140 130.0 0.667 H -64.3 -41.5 8.0 0.041 0.626 B:Q9Y5S9:0.626
 HOH
 4.195
 CE1
 O
HIS C:139 C:140 129.0 0.662 H -65.9 -45.4 16.0 0.082 0.58 D:Q9Y5S9:0.579
 HOH
 4.620
 NE2
 O
1oo0 1 P49028 90.34 3e-96 X-RAY
 2003-05-27 HIS A:141 A:141 126.0 0.646 H -67.2 -37.0 16.0 0.082 0.564 B:Q9V535:0.564
 HOH
 2.723
 NE2
 O
1rk8 2 P49028 90.34 3e-96 X-RAY
 2004-04-13 HIS B:141 B:141 128.0 0.656 H -67.6 -41.9 13.0 0.067 0.589 A:Q9V535:0.59
 HOH
 4.049
 ND1
 O
2x1g 2 P49028 90.34 3e-96 X-RAY
 2010-02-16 HIS B:141 B:141 124.0 0.636 H -69.8 -28.6 19.0 0.097 0.539 A:Q9V535:0.538
HIS D:141 D:141 124.0 0.636 H -69.9 -28.6 NA NA NA
1hl6 2 P49028 90.34 5e-96 X-RAY
 2003-05-08 HIS B:141 B:141 130.0 0.667 H -70.9 -32.3 11.0 0.056 0.611 A:Q9V535:0.61
 HOH
 2.840
 NE2
 O
HIS D:141 D:141 129.0 0.662 H -77.5 -40.8 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q96a72-f1 1 Q96A72 100.0 1e-108 HIS A:142 A:142 131.0 0.672 H -70.5 -43.9
af-p61326-f1 1 P61326 98.63 2e-105 HIS A:140 A:140 131.0 0.672 H -68.7 -46.3