Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr12 12301922 . C A CCDS8647.1:NM_002336.2:c.3160Ggc>Tgc_NP_002327.2:p.1054G>C Homo sapiens LDL receptor related protein 6 (LRP6), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3s2k 1 O75581 99.84 0.0 X-RAY
 2011-11-02 GLY A:427 A:1054 24.0 0.32 -125.8 141.5 24.0 0.32 0.0 HOH
 6.785
 O
 O
GLY B:427 B:1054 21.0 0.28 -153.9 153.5 21.0 0.28 0.0 NAG
HOH
 9.941
8.916
 N
CA
 C8
O
5fww 1 O75581 99.84 0.0 X-RAY
 2016-07-20 GLY A:427 A:1054 22.0 0.293 -159.5 161.0 22.0 0.293 0.0
4a0p 1 O75581 100.0 0.0 X-RAY
 2011-10-26 GLY A:429 A:1054 30.0 0.4 -143.0 149.1 30.0 0.4 0.0 HOH
 2.462
 O
 O
5gje 2 O75581 99.84 0.0 EM
 2017-01-18 GLY B:424 B:1054 22.0 0.293 -153.9 153.5 22.0 0.293 0.0 NAG
 9.942
 N
 C8
6h16 1 O75581 100.0 0.0 X-RAY
 2019-01-30 GLY A:425 A:1054 20.0 0.267 -178.0 150.6 20.0 0.267 0.0 NAG
 9.497
 N
 C8
6h15 1 O75581 100.0 0.0 X-RAY
 2019-01-30 GLY A:425 A:1054 20.0 0.267 171.1 144.3 20.0 0.267 0.0 NAG
HOH
 9.432
6.024
 N
O
 C8
O
GLY D:425 B:1054 20.0 0.267 -139.8 162.6 20.0 0.267 0.0 NAG
HOH
 9.977
4.447
 N
O
 C8
O
3s8v 1 O75581 99.84 0.0 X-RAY
 2011-10-26 GLY A:434 A:1054 29.0 0.387 134.3 147.3 29.0 0.387 0.0
GLY B:434 B:1054 20.0 0.267 -154.0 148.3 NA NA NA
3s8z 1 O75581 99.84 0.0 X-RAY
 2011-10-26 GLY A:434 A:1054 31.0 0.413 -146.4 154.7 31.0 0.413 0.0 NAG
 9.641
 N
 C8

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o75581-f1 1 O75581 100.0 0.0 GLY A:1054 A:1054 24.0 0.32 -155.8 146.5