Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr12 12311955 . T A CCDS8647.1:NM_002336.2:c.2599Acc>Tcc_NP_002327.2:p.867T>S Homo sapiens LDL receptor related protein 6 (LRP6), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3s2k 1 O75581 99.84 0.0 X-RAY
 2011-11-02 THR A:240 A:867 62.0 0.443 E -138.8 170.0 62.0 0.443 0.0 NAG
HOH
 8.564
7.865
 CG2
O
 O7
O
THR B:240 B:867 60.0 0.429 E -136.7 158.4 60.0 0.429 0.0 NAG
HOH
 9.199
8.369
 CG2
O
 C1
O
5fww 1 O75581 99.84 0.0 X-RAY
 2016-07-20 THR A:240 A:867 55.0 0.393 E -143.5 135.0 55.0 0.393 0.0
4a0p 1 O75581 100.0 0.0 X-RAY
 2011-10-26 THR A:242 A:867 59.0 0.421 E -143.7 157.5 59.0 0.421 0.0 NAG
HOH
 9.892
3.423
 CG2
CA
 O7
O
5gje 2 O75581 99.84 0.0 EM
 2017-01-18 THR B:237 B:867 58.0 0.414 E -136.6 158.4 58.0 0.414 0.0 NAG
 9.197
 CG2
 C1
6h16 1 O75581 100.0 0.0 X-RAY
 2019-01-30 THR A:238 A:867 60.0 0.429 E -132.8 146.4 60.0 0.429 0.0 NAG
 8.624
 CG2
 O7
6h15 1 O75581 100.0 0.0 X-RAY
 2019-01-30 THR A:238 A:867 68.0 0.486 E -161.5 152.9 68.0 0.486 0.0 NAG
HOH
 8.883
8.986
 CG2
N
 C8
O
THR D:238 B:867 54.0 0.386 E -151.7 156.4 54.0 0.386 0.0 NAG
HOH
 9.698
6.527
 N
N
 C1
O
3s8v 1 O75581 99.84 0.0 X-RAY
 2011-10-26 THR A:247 A:867 63.0 0.45 E -117.7 165.2 63.0 0.45 0.0
THR B:247 B:867 69.0 0.493 E -151.7 160.7 NA NA NA
3s8z 1 O75581 99.84 0.0 X-RAY
 2011-10-26 THR A:247 A:867 59.0 0.421 E -136.6 144.3 59.0 0.421 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o75581-f1 1 O75581 100.0 0.0 THR A:867 A:867 53.0 0.379 E -133.5 127.6