Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr12 12317238 . T A CCDS8647.1:NM_002336.2:c.2021aAc>aTc_NP_002327.2:p.674N>I Homo sapiens LDL receptor related protein 6 (LRP6), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3s2k 1 O75581 99.84 0.0 X-RAY
2011-11-02 ASN A:47 A:674 71.0 0.444 T 52.2 38.4 71.0 0.444 0.0 NAG
NAG
FUC
HOH
3.781
6.590
3.577
9.183
ND2
CB
ND2
N
O6
C8
C3
O
ASN B:47 B:674 72.0 0.45 T 56.1 52.5 72.0 0.45 0.0 NAG
NAG
FUC
HOH
3.875
6.683
3.698
5.949
ND2
CB
ND2
N
O6
C8
C3
O
5fww 1 O75581 99.84 0.0 X-RAY
2016-07-20 ASN A:47 A:674 78.0 0.487 T 62.7 50.1 78.0 0.487 0.0
4a0p 1 O75581 100.0 0.0 X-RAY
2011-10-26 ASN A:49 A:674 87.0 0.544 T 53.3 42.4 87.0 0.544 0.0 NAG
NAG
HOH
5.324
5.650
4.632
CB
N
O
O6
C8
O
5gje 2 O75581 99.84 0.0 EM
2017-01-18 ASN B:44 B:674 72.0 0.45 T 56.0 52.6 72.0 0.45 0.0 NAG
NAG
FUC
3.875
6.683
3.697
ND2
CB
ND2
O6
C8
C3
6h16 1 O75581 100.0 0.0 X-RAY
2019-01-30 ASN A:45 A:674 77.0 0.481 T 57.6 42.8 77.0 0.481 0.0 NAG
NAG
BMA
2.470
5.462
8.273
ND2
CB
N
O7
C6
O2
6h15 1 O75581 100.0 0.0 X-RAY
2019-01-30 ASN A:45 A:674 81.0 0.506 T 54.5 38.6 81.0 0.506 0.0 NAG
NAG
HOH
4.591
5.677
7.127
ND2
CB
N
C6
O6
O
ASN D:45 B:674 79.0 0.494 T 55.1 37.4 79.0 0.494 0.0 NAG
NAG
HOH
3.975
5.644
6.208
ND2
CB
CB
O6
O6
O
3s8v 1 O75581 99.84 0.0 X-RAY
2011-10-26 ASN A:54 A:674 70.0 0.438 T 63.7 29.9 70.0 0.438 0.0
ASN B:54 B:674 79.0 0.494 T 65.5 49.6 NA NA NA
3s8z 1 O75581 99.84 0.0 X-RAY
2011-10-26 ASN A:54 A:674 66.0 0.412 T 51.8 40.7 66.0 0.412 0.0 NAG
4.774
ND2
O6

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o75581-f1 1 O75581 100.0 0.0 ASN A:674 A:674 86.0 0.537 T 52.7 40.1