Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr12 | 12317238 | . | T | A | CCDS8647.1:NM_002336.2:c.2021aAc>aTc_NP_002327.2:p.674N>I | Homo sapiens LDL receptor related protein 6 (LRP6), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
3s2k | 1 | O75581 | 99.84 | 0.0 |
X-RAY |
2011-11-02 | ASN | A:47 | A:674 | 71.0 | 0.444 | T | 52.2 | 38.4 | 71.0 | 0.444 | 0.0 |
NAG NAG FUC HOH |
3.781 6.590 3.577 9.183 |
ND2 CB ND2 N |
O6 C8 C3 O |
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ASN | B:47 | B:674 | 72.0 | 0.45 | T | 56.1 | 52.5 | 72.0 | 0.45 | 0.0 |
NAG NAG FUC HOH |
3.875 6.683 3.698 5.949 |
ND2 CB ND2 N |
O6 C8 C3 O |
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5fww | 1 | O75581 | 99.84 | 0.0 |
X-RAY |
2016-07-20 | ASN | A:47 | A:674 | 78.0 | 0.487 | T | 62.7 | 50.1 | 78.0 | 0.487 | 0.0 | ||||||
4a0p | 1 | O75581 | 100.0 | 0.0 |
X-RAY |
2011-10-26 | ASN | A:49 | A:674 | 87.0 | 0.544 | T | 53.3 | 42.4 | 87.0 | 0.544 | 0.0 |
NAG NAG HOH |
5.324 5.650 4.632 |
CB N O |
O6 C8 O |
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5gje | 2 | O75581 | 99.84 | 0.0 |
EM |
2017-01-18 | ASN | B:44 | B:674 | 72.0 | 0.45 | T | 56.0 | 52.6 | 72.0 | 0.45 | 0.0 |
NAG NAG FUC |
3.875 6.683 3.697 |
ND2 CB ND2 |
O6 C8 C3 |
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6h16 | 1 | O75581 | 100.0 | 0.0 |
X-RAY |
2019-01-30 | ASN | A:45 | A:674 | 77.0 | 0.481 | T | 57.6 | 42.8 | 77.0 | 0.481 | 0.0 |
NAG NAG BMA |
2.470 5.462 8.273 |
ND2 CB N |
O7 C6 O2 |
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6h15 | 1 | O75581 | 100.0 | 0.0 |
X-RAY |
2019-01-30 | ASN | A:45 | A:674 | 81.0 | 0.506 | T | 54.5 | 38.6 | 81.0 | 0.506 | 0.0 |
NAG NAG HOH |
4.591 5.677 7.127 |
ND2 CB N |
C6 O6 O |
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ASN | D:45 | B:674 | 79.0 | 0.494 | T | 55.1 | 37.4 | 79.0 | 0.494 | 0.0 |
NAG NAG HOH |
3.975 5.644 6.208 |
ND2 CB CB |
O6 O6 O |
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3s8v | 1 | O75581 | 99.84 | 0.0 |
X-RAY |
2011-10-26 | ASN | A:54 | A:674 | 70.0 | 0.438 | T | 63.7 | 29.9 | 70.0 | 0.438 | 0.0 | ||||||
ASN | B:54 | B:674 | 79.0 | 0.494 | T | 65.5 | 49.6 | NA | NA | NA | |||||||||||||
3s8z | 1 | O75581 | 99.84 | 0.0 |
X-RAY |
2011-10-26 | ASN | A:54 | A:674 | 66.0 | 0.412 | T | 51.8 | 40.7 | 66.0 | 0.412 | 0.0 |
NAG |
4.774 |
ND2 |
O6 |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-o75581-f1 | 1 | O75581 | 100.0 | 0.0 | ASN | A:674 | A:674 | 86.0 | 0.537 | T | 52.7 | 40.1 |