Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr12 13769540 . G A CCDS8662.1:NM_000834.3:c.1177Cga>Tga_NP_000825.2:p.393R>* Homo sapiens glutamate ionotropic receptor NMDA type subunit 2B (GRIN2B), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
7eu8 2 Q13224 100.0 0.0 EM
2021-07-28 ARG B:393 NA:NA DO NA DO DO DO NA NA NA
ARG D:393 NA:NA DO NA DO DO DO NA NA NA
6wi1 2 ? 99.28 0.0 EM
2020-07-15 ARG B:424 B:393 55.0 NA 56.8 68.2 55.0 NA NA
ARG D:424 D:393 56.0 NA 56.9 68.2 56.0 NA NA
5fxg 2 Q00960 98.91 0.0 EM
2016-05-11 ARG B:368 B:393 89.0 NA -53.4 137.9 89.0 NA NA
ARG D:368 D:393 89.0 NA -53.3 137.9 89.0 NA NA
5fxh 2 Q00960 98.91 0.0 EM
2016-05-11 ARG B:368 B:393 94.0 NA 65.8 -4.7 94.0 NA NA
ARG D:368 D:393 94.0 NA 65.8 -4.7 94.0 NA NA
5fxi 2 Q00960 98.91 0.0 EM
2016-05-11 ARG B:368 B:393 96.0 NA -141.1 127.6 96.0 NA NA
ARG D:368 D:393 97.0 NA -141.1 127.6 97.0 NA NA
5fxj 2 Q00960 98.91 0.0 EM
2016-05-25 ARG B:368 B:393 145.0 NA -71.2 360.0 145.0 NA NA
ARG D:368 D:393 88.0 NA -71.2 -178.9 88.0 NA NA
5fxk 2 Q00960 98.91 0.0 EM
2016-05-11 ARG B:368 B:393 137.0 NA 55.5 360.0 137.0 NA NA
ARG D:368 D:393 137.0 NA 55.6 360.0 137.0 NA NA
6whr 2 Q00960 98.91 0.0 EM
2020-08-05 ARG B:424 NA:NA DO NA DO DO DO NA NA NA
ARG D:424 NA:NA DO NA DO DO DO NA NA NA
6whs 2 Q00960 98.91 0.0 EM
2020-08-05 ARG B:424 B:393 97.0 NA -123.4 163.7 97.0 NA NA
ARG D:424 D:393 100.0 NA -123.4 163.7 100.0 NA NA
6wht 2 Q00960 98.91 0.0 EM
2020-08-05 ARG B:424 NA:NA DO NA DO DO DO NA NA NA
ARG D:424 NA:NA DO NA DO DO DO NA NA NA
6whu 2 Q00960 98.91 0.0 EM
2020-08-05 ARG B:424 B:393 95.0 NA -98.4 88.5 95.0 NA NA
ARG D:424 D:393 93.0 NA -98.4 88.5 93.0 NA NA
6whv 2 Q00960 98.91 0.0 EM
2020-08-05 ARG B:424 B:393 95.0 NA -122.8 -170.0 95.0 NA NA
ARG D:424 D:393 72.0 NA -108.5 134.6 72.0 NA NA
6whw 2 ? 98.91 0.0 EM
2020-07-15 ARG B:424 B:393 101.0 NA -154.2 -179.2 101.0 NA NA
ARG D:424 D:393 100.0 NA -154.2 -179.2 100.0 NA NA
6whx 2 ? 98.91 0.0 EM
2020-07-15 ARG B:424 B:393 72.0 NA -90.2 -170.2 72.0 NA NA
ARG D:424 D:393 104.0 NA -125.0 169.2 104.0 NA NA
6why 2 ? 98.91 0.0 EM
2020-07-15 ARG B:424 NA:NA DO NA DO DO DO NA NA NA
ARG D:424 NA:NA DO NA DO DO DO NA NA NA
6wi0 2 Q00960 98.91 0.0 EM
2020-07-15 ARG B:424 NA:NA DO NA DO DO DO NA NA NA
ARG D:424 NA:NA DO NA DO DO DO NA NA NA
4pe5 2 Q00960 97.82 0.0 X-RAY
2014-06-04 ARG B:367 B:393 70.0 NA -101.5 146.6 70.0 NA NA
ARG D:367 D:393 77.0 NA -108.5 142.7 77.0 NA NA
6cna 2 Q00960 99.14 0.0 EM
2018-10-03 ARG B:360 B:393 149.0 0.662 -153.0 147.0 149.0 0.662 0.0
ARG D:360 D:393 147.0 0.653 -153.0 146.9 147.0 0.653 0.0
5uow 3 A7XY94 86.86 0.0 EM
2017-03-22 ASP D:386 D:386 116.0 NA S -61.9 -41.2 116.0 NA NA
5up2 3 A7XY94 86.86 0.0 EM
2017-03-22 ASP D:386 D:386 96.0 NA S -64.5 -42.7 96.0 NA NA
5iou 2 A7XY94 85.78 0.0 EM
2016-04-20 ASP C:386 B:386 99.0 NA S -74.8 -34.9 99.0 NA NA
ASP D:386 D:386 100.0 NA S -72.3 -34.9 100.0 NA NA
5iov 2 A7XY94 85.78 0.0 EM
2016-04-20 ASP C:386 B:386 110.0 NA S -72.9 -32.7 110.0 NA NA
ASP D:386 D:386 100.0 NA S -85.1 -31.5 100.0 NA NA
5ipq 2 A7XY94 85.78 0.0 EM
2016-04-20 ASP B:386 B:386 83.0 NA S 48.5 52.3 83.0 NA NA
ASP D:386 NA:NA DO NA DO DO DO NA NA NA
5ipr 2 A7XY94 85.78 0.0 EM
2016-04-20 ASP B:386 B:386 84.0 NA S 48.4 52.4 84.0 NA NA
ASP D:386 NA:NA DO NA DO DO DO NA NA NA
5ips 2 A7XY94 85.78 0.0 EM
2016-04-20 ASP B:386 B:386 83.0 NA S 48.5 52.3 83.0 NA NA
ASP D:386 NA:NA DO NA DO DO DO NA NA NA
5ipt 2 A7XY94 85.78 0.0 EM
2016-04-20 ASP B:386 B:386 82.0 NA S 48.5 52.3 82.0 NA NA
ASP D:386 NA:NA DO NA DO DO DO NA NA NA
5ipu 2 A7XY94 85.78 0.0 EM
2016-04-20 ASP B:386 B:386 83.0 NA S 48.4 52.3 83.0 NA NA
ASP D:386 NA:NA DO NA DO DO DO NA NA NA
5ipv 2 A7XY94 85.78 0.0 EM
2016-04-20 ASP B:386 NA:NA DO NA DO DO DO NA NA NA
ASP D:386 NA:NA DO NA DO DO DO NA NA NA
4tll 2 A7XY94 87.47 0.0 X-RAY
2014-07-02 ASP B:367 NA:NA DO NA DO DO DO NA NA NA
ASP D:367 D:386 100.0 NA S 57.8 -137.6 100.0 NA NA
4tlm 2 A7XY94 87.47 0.0 X-RAY
2014-07-02 ASP B:367 B:386 26.0 NA S 48.5 52.3 26.0 NA NA
ASP D:367 NA:NA DO NA DO DO DO NA NA NA
5ewj 2 Q13224 99.73 0.0 X-RAY
2016-03-02 ARG B:363 B:393 220.0 0.978 -95.1 360.0 220.0 0.978 0.0 HOH
4.087
O
O
ARG D:363 D:393 180.0 0.8 -76.2 106.9 NA NA NA
5ewl 2 Q13224 99.73 0.0 X-RAY
2016-03-02 ARG B:363 NA:NA DO NA DO DO DO NA NA NA
ARG D:363 D:393 180.0 0.8 -68.5 121.1 NA NA NA
5ewm 2 Q13224 99.73 0.0 X-RAY
2016-03-02 ARG B:363 B:393 224.0 0.996 -97.5 360.0 224.0 0.996 0.0 HOH
4.185
O
O
ARG D:363 D:393 180.0 0.8 -81.6 101.4 NA NA NA
3qel 2 Q00960 99.45 0.0 X-RAY
2011-06-15 ARG B:363 B:393 221.0 0.982 -108.7 360.0 221.0 0.982 0.0 HOH
7.028
CG
O
ARG D:363 D:393 192.0 0.853 -85.6 124.0 192.0 0.853 0.0 HOH
6.983
C
O
3qem 2 Q00960 99.45 0.0 X-RAY
2011-06-15 ARG B:363 B:393 219.0 0.973 -107.1 360.0 219.0 0.973 0.0
ARG D:363 D:393 233.0 1.0 -122.4 360.0 NA NA NA
5b3j 2 Q00960 99.45 0.0 X-RAY
2016-05-11 ARG C:363 NA:NA DO NA DO DO DO NA NA NA
ARG E:363 NA:NA DO NA DO DO DO NA NA NA
3jpw 1 Q00960 99.45 0.0 X-RAY
2009-12-08 ARG A:362 A:393 176.0 0.782 -118.7 117.0 176.0 0.782 0.0 CL
6.996
O
CL
3jpy 1 Q00960 99.45 0.0 X-RAY
2009-12-08 ARG A:362 A:393 86.0 NA -118.3 126.0 86.0 NA NA HOH
6.631
CA
O
6e7r 2 Q00960 99.45 0.0 X-RAY
2019-01-30 ARG B:362 B:393 108.0 NA -77.7 144.2 108.0 NA NA
ARG D:362 D:393 189.0 0.84 -71.3 128.1 NA NA NA
6e7s 2 Q00960 99.45 0.0 X-RAY
2019-01-30 ARG B:362 B:393 185.0 0.822 -112.0 124.6 185.0 0.822 0.0
ARG D:362 D:393 191.0 0.849 -108.7 123.6 NA NA NA
6e7t 2 Q00960 99.45 0.0 X-RAY
2019-01-30 ARG B:362 B:393 243.0 1.0 -95.0 360.0 243.0 1.0 0.0
ARG D:362 D:393 224.0 0.996 -99.6 360.0 NA NA NA
6e7u 2 Q00960 99.45 0.0 X-RAY
2019-01-30 ARG B:362 B:393 206.0 0.916 -65.3 149.9 206.0 0.916 0.0
ARG D:362 D:393 192.0 0.853 -69.9 135.9 NA NA NA
6e7v 2 Q00960 99.45 0.0 X-RAY
2019-01-30 ARG B:362 B:393 109.0 NA -82.0 124.3 109.0 NA NA
ARG D:362 D:393 190.0 0.844 -87.7 122.6 NA NA NA
6e7w 2 Q00960 99.45 0.0 X-RAY
2019-01-30 ARG B:362 B:393 101.0 NA -139.4 -114.9 101.0 NA NA
ARG D:362 D:393 190.0 0.844 -104.6 119.8 NA NA NA
6e7x 2 Q00960 99.45 0.0 X-RAY
2019-01-30 ARG B:362 B:393 105.0 NA -71.6 137.5 105.0 NA NA
ARG D:362 D:393 192.0 0.853 -81.8 125.0 NA NA NA
5tpz 2 Q00960 99.45 0.0 X-RAY
2016-12-14 ARG B:362 D:393 151.0 NA -76.9 360.0 151.0 NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q13224-f1 1 Q13224 100.0 0.0 ARG A:393 A:393 106.0 0.471 -76.3 94.1