Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr12 13828685 . C A CCDS8662.1:NM_000834.3:c.1119tgG>tgT_NP_000825.2:p.373W>C Homo sapiens glutamate ionotropic receptor NMDA type subunit 2B (GRIN2B), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
7eu8 2 Q13224 100.0 0.0 EM
 2021-07-28 TRP B:373 B:373 92.0 0.361 E -129.1 141.2 92.0 0.361 0.0
TRP D:373 D:373 121.0 0.475 -68.6 145.1 121.0 0.475 0.0
6wi1 2 ? 99.28 0.0 EM
 2020-07-15 TRP B:404 B:373 24.0 0.094 E -76.6 98.7 24.0 0.094 0.0
TRP D:404 D:373 22.0 0.086 E -76.6 98.7 22.0 0.086 0.0
5fxg 2 Q00960 98.91 0.0 EM
 2016-05-11 TRP B:348 B:373 47.0 NA E -66.2 160.3 47.0 NA NA
TRP D:348 D:373 52.0 NA E -66.2 160.4 52.0 NA NA
5fxh 2 Q00960 98.91 0.0 EM
 2016-05-11 TRP B:348 B:373 73.0 NA E -59.6 123.8 73.0 NA NA
TRP D:348 D:373 71.0 NA E -59.7 123.9 71.0 NA NA
5fxi 2 Q00960 98.91 0.0 EM
 2016-05-11 TRP B:348 B:373 51.0 NA E -61.1 123.9 51.0 NA NA
TRP D:348 D:373 51.0 NA E -61.1 123.8 51.0 NA NA
5fxj 2 Q00960 98.91 0.0 EM
 2016-05-25 TRP B:348 B:373 69.0 NA -89.4 110.8 69.0 NA NA
TRP D:348 D:373 71.0 NA -89.4 110.8 71.0 NA NA
5fxk 2 Q00960 98.91 0.0 EM
 2016-05-11 TRP B:348 B:373 52.0 NA E -79.8 117.4 52.0 NA NA
TRP D:348 D:373 53.0 NA E -79.8 117.5 53.0 NA NA
6whr 2 Q00960 98.91 0.0 EM
 2020-08-05 TRP B:404 B:373 55.0 0.216 E -93.9 114.8 55.0 0.216 0.0
TRP D:404 D:373 53.0 0.208 E -93.8 114.8 53.0 0.208 0.0
6whs 2 Q00960 98.91 0.0 EM
 2020-08-05 TRP B:404 B:373 47.0 0.184 E -104.9 94.5 47.0 0.184 0.0
TRP D:404 D:373 47.0 0.184 E -104.9 94.4 47.0 0.184 0.0
6wht 2 Q00960 98.91 0.0 EM
 2020-08-05 TRP B:404 B:373 55.0 0.216 -165.9 -176.1 55.0 0.216 0.0
TRP D:404 D:373 59.0 0.231 -166.0 -176.1 59.0 0.231 0.0
6whu 2 Q00960 98.91 0.0 EM
 2020-08-05 TRP B:404 B:373 23.0 0.09 E -107.6 126.1 23.0 0.09 0.0
TRP D:404 D:373 23.0 0.09 E -107.6 126.1 23.0 0.09 0.0
6whv 2 Q00960 98.91 0.0 EM
 2020-08-05 TRP B:404 B:373 22.0 0.086 -162.7 135.7 22.0 0.086 0.0
TRP D:404 D:373 35.0 0.137 B -95.7 142.8 35.0 0.137 0.0
6whw 2 ? 98.91 0.0 EM
 2020-07-15 TRP B:404 B:373 40.0 0.157 E -86.8 123.2 40.0 0.157 0.0
TRP D:404 D:373 40.0 0.157 E -86.8 123.3 40.0 0.157 0.0
6whx 2 ? 98.91 0.0 EM
 2020-07-15 TRP B:404 B:373 44.0 0.173 E -67.2 127.8 44.0 0.173 0.0
TRP D:404 D:373 47.0 0.184 B -129.2 115.7 47.0 0.184 0.0
6why 2 ? 98.91 0.0 EM
 2020-07-15 TRP B:404 B:373 29.0 0.114 E -109.5 152.1 29.0 0.114 0.0
TRP D:404 D:373 30.0 0.118 E -109.5 152.1 30.0 0.118 0.0
6wi0 2 Q00960 98.91 0.0 EM
 2020-07-15 TRP B:404 B:373 41.0 0.161 E -108.7 150.6 41.0 0.161 0.0
TRP D:404 D:373 42.0 0.165 E -108.7 150.6 42.0 0.165 0.0
4pe5 2 Q00960 97.82 0.0 X-RAY
 2014-06-04 TRP B:347 B:373 33.0 0.129 E -87.6 125.7 33.0 0.129 0.0
TRP D:347 D:373 34.0 0.133 E -82.7 127.1 34.0 0.133 0.0
6cna 2 Q00960 99.14 0.0 EM
 2018-10-03 TRP B:340 B:373 54.0 0.212 E -68.2 160.1 54.0 0.212 0.0
TRP D:340 D:373 56.0 0.22 E -68.2 160.1 56.0 0.22 0.0
5uow 3 A7XY94 86.86 0.0 EM
 2017-03-22 TRP D:368 D:368 40.0 0.157 E -94.6 108.0 40.0 0.157 0.0
5up2 3 A7XY94 86.86 0.0 EM
 2017-03-22 TRP D:368 D:368 42.0 0.165 E -94.6 108.0 42.0 0.165 0.0
5iou 2 A7XY94 85.78 0.0 EM
 2016-04-20 TRP C:368 B:368 57.0 NA E -73.9 113.5 57.0 NA NA
TRP D:368 D:368 62.0 NA E -72.0 111.3 62.0 NA NA
5iov 2 A7XY94 85.78 0.0 EM
 2016-04-20 TRP C:368 B:368 70.0 NA E -74.0 103.0 70.0 NA NA
TRP D:368 D:368 63.0 NA E -72.0 109.4 63.0 NA NA
5ipq 2 A7XY94 85.78 0.0 EM
 2016-04-20 TRP B:368 B:368 77.0 NA E -101.7 109.1 77.0 NA NA
TRP D:368 D:368 77.0 NA E -102.2 110.1 77.0 NA NA
5ipr 2 A7XY94 85.78 0.0 EM
 2016-04-20 TRP B:368 B:368 77.0 NA E -101.8 109.1 77.0 NA NA
TRP D:368 D:368 76.0 NA E -102.3 110.1 76.0 NA NA
5ips 2 A7XY94 85.78 0.0 EM
 2016-04-20 TRP B:368 B:368 77.0 NA E -101.8 109.1 77.0 NA NA
TRP D:368 D:368 77.0 NA E -102.3 110.1 77.0 NA NA
5ipt 2 A7XY94 85.78 0.0 EM
 2016-04-20 TRP B:368 B:368 77.0 NA E -101.8 109.1 77.0 NA NA
TRP D:368 D:368 77.0 NA E -102.3 110.2 77.0 NA NA
5ipu 2 A7XY94 85.78 0.0 EM
 2016-04-20 TRP B:368 B:368 76.0 NA E -101.8 109.1 76.0 NA NA
TRP D:368 D:368 77.0 NA E -102.3 110.1 77.0 NA NA
5ipv 2 A7XY94 85.78 0.0 EM
 2016-04-20 TRP B:368 B:368 78.0 NA E -102.3 110.3 78.0 NA NA
TRP D:368 D:368 79.0 NA E -102.2 110.3 79.0 NA NA
4tll 2 A7XY94 87.47 0.0 X-RAY
 2014-07-02 TRP B:349 B:368 33.0 0.129 E -79.4 119.3 33.0 0.129 0.0
TRP D:349 D:368 31.0 0.122 E -79.0 119.7 31.0 0.122 0.0
4tlm 2 A7XY94 87.47 0.0 X-RAY
 2014-07-02 TRP B:349 B:368 43.0 0.169 E -101.8 109.0 43.0 0.169 0.0
TRP D:349 D:368 47.0 0.184 E -102.3 110.1 47.0 0.184 0.0
5ewj 2 Q13224 99.73 0.0 X-RAY
 2016-03-02 TRP B:343 B:373 26.0 0.102 E -79.2 122.2 26.0 0.102 0.0 HOH
 2.694
 NE1
 O
TRP D:343 D:373 26.0 0.102 E -77.9 120.3 NA NA NA
5ewl 2 Q13224 99.73 0.0 X-RAY
 2016-03-02 TRP B:343 B:373 28.0 0.11 E -81.6 127.8 28.0 0.11 0.0 HOH
 3.085
 N
 O
TRP D:343 D:373 28.0 0.11 E -79.7 126.8 NA NA NA
5ewm 2 Q13224 99.73 0.0 X-RAY
 2016-03-02 TRP B:343 B:373 29.0 0.114 E -74.0 132.6 29.0 0.114 0.0 HOH
 2.775
 NE1
 O
TRP D:343 D:373 28.0 0.11 E -73.9 132.5 NA NA NA
3qel 2 Q00960 99.45 0.0 X-RAY
 2011-06-15 TRP B:343 B:373 35.0 0.137 E -82.9 127.6 35.0 0.137 0.0 HOH
 2.642
 NE1
 O
TRP D:343 D:373 32.0 0.125 E -80.0 127.6 32.0 0.125 0.0 HOH
 2.498
 NE1
 O
3qem 2 Q00960 99.45 0.0 X-RAY
 2011-06-15 TRP B:343 B:373 35.0 0.137 E -93.1 114.8 35.0 0.137 0.0
TRP D:343 D:373 34.0 0.133 E -85.4 128.3 NA NA NA
5b3j 2 Q00960 99.45 0.0 X-RAY
 2016-05-11 TRP C:343 C:373 55.0 0.216 -77.0 124.2 55.0 0.216 0.0
TRP E:343 D:373 55.0 0.216 E -78.1 128.4 NA NA NA
3jpw 1 Q00960 99.45 0.0 X-RAY
 2009-12-08 TRP A:342 A:373 22.0 0.086 E -75.3 135.7 22.0 0.086 0.0 CL
CL
HOH
 4.267
9.057
2.959
 O
N
NE1
 CL
CL
O
3jpy 1 Q00960 99.45 0.0 X-RAY
 2009-12-08 TRP A:342 A:373 36.0 0.141 E -104.4 125.8 36.0 0.141 0.0 HOH
 8.441
 CZ3
 O
6e7r 2 Q00960 99.45 0.0 X-RAY
 2019-01-30 TRP B:342 B:373 20.0 0.078 E -74.2 134.1 20.0 0.078 0.0 HOH
 2.823
 N
 O
TRP D:342 D:373 21.0 0.082 E -78.3 124.9 NA NA NA
6e7s 2 Q00960 99.45 0.0 X-RAY
 2019-01-30 TRP B:342 B:373 21.0 0.082 E -76.1 132.2 21.0 0.082 0.0 HOH
 2.719
 NE1
 O
TRP D:342 D:373 21.0 0.082 E -78.9 125.3 NA NA NA
6e7t 2 Q00960 99.45 0.0 X-RAY
 2019-01-30 TRP B:342 B:373 21.0 0.082 E -77.9 132.9 21.0 0.082 0.0 HOH
 2.782
 N
 O
TRP D:342 D:373 22.0 0.086 E -77.4 130.2 NA NA NA
6e7u 2 Q00960 99.45 0.0 X-RAY
 2019-01-30 TRP B:342 B:373 25.0 0.098 E -77.0 130.6 25.0 0.098 0.0 HOH
 2.826
 N
 O
TRP D:342 D:373 35.0 0.137 E -79.6 129.0 NA NA NA
6e7v 2 Q00960 99.45 0.0 X-RAY
 2019-01-30 TRP B:342 B:373 21.0 0.082 E -75.2 135.6 21.0 0.082 0.0 HOH
 2.826
 NE1
 O
TRP D:342 D:373 20.0 0.078 E -70.8 126.4 NA NA NA
6e7w 2 Q00960 99.45 0.0 X-RAY
 2019-01-30 TRP B:342 B:373 23.0 0.09 E -76.9 127.0 23.0 0.09 0.0 HOH
 2.626
 N
 O
TRP D:342 D:373 32.0 0.125 E -75.0 123.6 NA NA NA
6e7x 2 Q00960 99.45 0.0 X-RAY
 2019-01-30 TRP B:342 B:373 22.0 0.086 E -78.0 132.9 22.0 0.086 0.0 HOH
 2.991
 NE1
 O
TRP D:342 D:373 21.0 0.082 E -73.4 126.3 NA NA NA
5tpz 2 Q00960 99.45 0.0 X-RAY
 2016-12-14 TRP B:342 D:373 38.0 0.149 E -92.8 122.7 38.0 0.149 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q13224-f1 1 Q13224 100.0 0.0 TRP A:373 A:373 23.0 0.09 E -73.2 117.9