Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr12 13828736 . G A CCDS8662.1:NM_000834.3:c.1068taC>taT_NP_000825.2:p.356Y>Y Homo sapiens glutamate ionotropic receptor NMDA type subunit 2B (GRIN2B), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
7eu8 2 Q13224 100.0 0.0 EM
 2021-07-28 TYR B:356 B:356 21.0 NA -110.5 -175.9 21.0 NA NA
TYR D:356 D:356 63.0 0.274 -104.0 122.6 63.0 0.274 0.0
6wi1 2 ? 99.28 0.0 EM
 2020-07-15 TYR B:387 B:356 57.0 0.248 -157.1 162.9 57.0 0.248 0.0
TYR D:387 D:356 59.0 0.257 -157.0 163.0 59.0 0.257 0.0
5fxg 2 Q00960 98.91 0.0 EM
 2016-05-11 TYR B:331 B:356 11.0 NA -57.1 139.7 11.0 NA NA
TYR D:331 D:356 10.0 NA -57.2 139.8 10.0 NA NA
5fxh 2 Q00960 98.91 0.0 EM
 2016-05-11 TYR B:331 B:356 17.0 NA S -77.2 -171.4 17.0 NA NA
TYR D:331 D:356 17.0 NA S -77.2 -171.4 17.0 NA NA
5fxi 2 Q00960 98.91 0.0 EM
 2016-05-11 TYR B:331 B:356 19.0 NA -65.1 132.3 19.0 NA NA
TYR D:331 D:356 17.0 NA -65.1 132.2 17.0 NA NA
5fxj 2 Q00960 98.91 0.0 EM
 2016-05-25 TYR B:331 B:356 13.0 NA B -65.3 146.2 13.0 NA NA
TYR D:331 D:356 12.0 NA B -65.2 146.2 12.0 NA NA
5fxk 2 Q00960 98.91 0.0 EM
 2016-05-11 TYR B:331 B:356 12.0 NA -72.1 177.7 12.0 NA NA
TYR D:331 D:356 12.0 NA -72.0 177.7 12.0 NA NA
6whr 2 Q00960 98.91 0.0 EM
 2020-08-05 TYR B:387 B:356 41.0 0.178 S -83.3 164.9 41.0 0.178 0.0
TYR D:387 D:356 43.0 0.187 S -83.4 164.9 43.0 0.187 0.0
6whs 2 Q00960 98.91 0.0 EM
 2020-08-05 TYR B:387 B:356 14.0 NA S -86.6 -178.1 14.0 NA NA
TYR D:387 D:356 13.0 NA S -86.7 -178.0 13.0 NA NA
6wht 2 Q00960 98.91 0.0 EM
 2020-08-05 TYR B:387 B:356 59.0 0.257 S -155.6 168.7 59.0 0.257 0.0
TYR D:387 D:356 60.0 0.261 S -155.6 168.7 60.0 0.261 0.0
6whu 2 Q00960 98.91 0.0 EM
 2020-08-05 TYR B:387 B:356 50.0 0.217 -124.1 113.7 50.0 0.217 0.0
TYR D:387 D:356 48.0 0.209 -124.0 113.7 48.0 0.209 0.0
6whv 2 Q00960 98.91 0.0 EM
 2020-08-05 TYR B:387 B:356 45.0 0.196 S -166.8 -172.8 45.0 0.196 0.0
TYR D:387 D:356 47.0 0.204 -136.6 163.8 47.0 0.204 0.0
6whw 2 ? 98.91 0.0 EM
 2020-07-15 TYR B:387 B:356 27.0 0.117 B -149.6 147.8 27.0 0.117 0.0
TYR D:387 D:356 28.0 0.122 B -149.7 147.7 28.0 0.122 0.0
6whx 2 ? 98.91 0.0 EM
 2020-07-15 TYR B:387 B:356 73.0 0.317 S -139.0 136.0 73.0 0.317 0.0
TYR D:387 D:356 74.0 0.322 S -173.9 169.2 74.0 0.322 0.0
6why 2 ? 98.91 0.0 EM
 2020-07-15 TYR B:387 B:356 54.0 0.235 -105.8 134.8 54.0 0.235 0.0
TYR D:387 D:356 53.0 0.23 -105.8 134.8 53.0 0.23 0.0
6wi0 2 Q00960 98.91 0.0 EM
 2020-07-15 TYR B:387 B:356 22.0 0.096 -168.7 145.3 22.0 0.096 0.0
TYR D:387 D:356 23.0 0.1 -168.8 145.3 23.0 0.1 0.0
4pe5 2 Q00960 97.82 0.0 X-RAY
 2014-06-04 TYR B:330 B:356 39.0 0.17 -133.0 162.3 39.0 0.17 0.0
TYR D:330 D:356 44.0 0.191 S -110.8 168.2 44.0 0.191 0.0
6cna 2 Q00960 99.14 0.0 EM
 2018-10-03 TYR B:323 B:356 54.0 0.235 E -156.6 155.9 54.0 0.235 0.0
TYR D:323 D:356 51.0 0.222 E -156.7 155.9 51.0 0.222 0.0
5uow 3 A7XY94 86.86 0.0 EM
 2017-03-22 TYR D:351 D:351 5.0 NA B -76.3 153.9 5.0 NA NA
5up2 3 A7XY94 86.86 0.0 EM
 2017-03-22 TYR D:351 D:351 3.0 NA B -76.3 155.8 3.0 NA NA
5iou 2 A7XY94 85.78 0.0 EM
 2016-04-20 TYR C:351 B:351 23.0 NA B -131.8 168.7 23.0 NA NA
TYR D:351 D:351 25.0 NA B -135.7 166.6 25.0 NA NA
5iov 2 A7XY94 85.78 0.0 EM
 2016-04-20 TYR C:351 B:351 16.0 NA B -134.2 167.0 16.0 NA NA
TYR D:351 D:351 13.0 NA S -130.7 165.9 13.0 NA NA
5ipq 2 A7XY94 85.78 0.0 EM
 2016-04-20 TYR B:351 B:351 24.0 NA B -76.7 149.8 24.0 NA NA
TYR D:351 D:351 22.0 NA B -76.3 150.2 22.0 NA NA
5ipr 2 A7XY94 85.78 0.0 EM
 2016-04-20 TYR B:351 B:351 25.0 NA B -76.6 149.9 25.0 NA NA
TYR D:351 D:351 23.0 NA B -76.3 150.3 23.0 NA NA
5ips 2 A7XY94 85.78 0.0 EM
 2016-04-20 TYR B:351 B:351 25.0 NA B -76.7 150.0 25.0 NA NA
TYR D:351 D:351 24.0 NA B -76.2 150.3 24.0 NA NA
5ipt 2 A7XY94 85.78 0.0 EM
 2016-04-20 TYR B:351 B:351 22.0 NA B -76.6 149.9 22.0 NA NA
TYR D:351 D:351 21.0 NA B -76.3 150.3 21.0 NA NA
5ipu 2 A7XY94 85.78 0.0 EM
 2016-04-20 TYR B:351 B:351 24.0 NA B -76.6 149.9 24.0 NA NA
TYR D:351 D:351 22.0 NA B -76.2 150.2 22.0 NA NA
5ipv 2 A7XY94 85.78 0.0 EM
 2016-04-20 TYR B:351 B:351 23.0 NA B -76.4 149.5 23.0 NA NA
TYR D:351 D:351 22.0 NA B -76.3 150.1 22.0 NA NA
4tll 2 A7XY94 87.47 0.0 X-RAY
 2014-07-02 TYR B:332 B:351 9.0 0.039 S -90.9 177.2 9.0 0.039 0.0
TYR D:332 D:351 2.0 0.009 S -90.4 177.4 2.0 0.009 0.0
4tlm 2 A7XY94 87.47 0.0 X-RAY
 2014-07-02 TYR B:332 B:351 1.0 0.004 B -76.6 149.9 1.0 0.004 0.0
TYR D:332 D:351 6.0 NA B -76.4 150.2 6.0 NA NA
5ewj 2 Q13224 99.73 0.0 X-RAY
 2016-03-02 TYR B:326 B:356 51.0 0.222 B -121.1 159.1 51.0 0.222 0.0 HOH
 3.523
 CD2
 O
TYR D:326 D:356 42.0 0.183 B -124.4 158.9 NA NA NA
5ewl 2 Q13224 99.73 0.0 X-RAY
 2016-03-02 TYR B:326 B:356 8.0 0.035 B -102.8 160.4 8.0 0.035 0.0 HOH
 4.686
 CE1
 O
TYR D:326 D:356 10.0 0.043 B -135.9 151.5 NA NA NA
5ewm 2 Q13224 99.73 0.0 X-RAY
 2016-03-02 TYR B:326 B:356 5.0 0.022 B -122.5 155.0 5.0 0.022 0.0 5SM
HOH
 7.948
4.018
 OH
CE2
 N1
O
TYR D:326 D:356 6.0 0.026 B -123.4 150.9 NA NA NA
3qel 2 Q00960 99.45 0.0 X-RAY
 2011-06-15 TYR B:326 B:356 49.0 0.213 S -110.9 168.3 49.0 0.213 0.0 HOH
 3.528
 CD1
 O
TYR D:326 D:356 54.0 0.235 B -130.7 156.5 54.0 0.235 0.0
3qem 2 Q00960 99.45 0.0 X-RAY
 2011-06-15 TYR B:326 B:356 54.0 0.235 B -112.7 159.6 54.0 0.235 0.0
TYR D:326 D:356 15.0 NA B -116.4 140.7 NA NA NA
5b3j 2 Q00960 99.45 0.0 X-RAY
 2016-05-11 TYR C:326 C:356 39.0 0.17 B -107.3 164.1 39.0 0.17 0.0 HOH
 6.627
 OH
 O
TYR E:326 D:356 40.0 0.174 B -106.9 163.4 NA NA NA
3jpw 1 Q00960 99.45 0.0 X-RAY
 2009-12-08 TYR A:325 A:356 10.0 0.043 B -113.2 162.2 10.0 0.043 0.0 CL
CL
CL
NA
HOH
 6.996
9.376
3.917
5.475
3.815
 CE1
OH
CE2
CD1
CD2
 CL
CL
CL
NA
O
3jpy 1 Q00960 99.45 0.0 X-RAY
 2009-12-08 TYR A:325 A:356 11.0 0.048 B -113.4 162.8 11.0 0.048 0.0 CL
CL
NA
 6.911
9.428
5.663
 CE1
OH
CD1
 CL
CL
NA
6e7r 2 Q00960 99.45 0.0 X-RAY
 2019-01-30 TYR B:325 B:356 9.0 0.039 B -117.3 159.2 9.0 0.039 0.0 CL
HOH
 6.049
4.422
 CE1
CE1
 CL
O
TYR D:325 D:356 11.0 0.048 B -120.5 159.4 NA NA NA
6e7s 2 Q00960 99.45 0.0 X-RAY
 2019-01-30 TYR B:325 B:356 12.0 0.052 B -106.6 164.0 12.0 0.052 0.0 HOH
 3.109
 CD2
 O
TYR D:325 D:356 8.0 0.035 B -109.4 162.9 NA NA NA
6e7t 2 Q00960 99.45 0.0 X-RAY
 2019-01-30 TYR B:325 B:356 50.0 0.217 B -121.7 164.1 50.0 0.217 0.0 CL
HOH
 8.776
2.907
 CB
OH
 CL
O
TYR D:325 D:356 50.0 0.217 B -122.7 163.3 NA NA NA
6e7u 2 Q00960 99.45 0.0 X-RAY
 2019-01-30 TYR B:325 B:356 61.0 0.265 B -130.5 160.4 61.0 0.265 0.0 CL
HOH
 8.883
3.047
 CB
OH
 CL
O
TYR D:325 D:356 49.0 0.213 B -129.8 160.1 NA NA NA
6e7v 2 Q00960 99.45 0.0 X-RAY
 2019-01-30 TYR B:325 B:356 8.0 0.035 B -116.9 164.4 8.0 0.035 0.0 CL
HOH
 6.372
4.228
 CE1
CB
 CL
O
TYR D:325 D:356 59.0 0.257 B -130.5 162.1 NA NA NA
6e7w 2 Q00960 99.45 0.0 X-RAY
 2019-01-30 TYR B:325 B:356 5.0 NA B -122.5 164.4 5.0 NA NA CL
HOH
 8.540
4.369
 CB
CB
 CL
O
TYR D:325 D:356 10.0 0.043 B -117.4 164.7 NA NA NA
6e7x 2 Q00960 99.45 0.0 X-RAY
 2019-01-30 TYR B:325 B:356 8.0 0.035 B -116.5 159.1 8.0 0.035 0.0 T97
CL
HOH
 9.501
6.498
4.356
 OH
CE1
CB
 C13
CL
O
TYR D:325 D:356 47.0 0.204 B -129.9 159.5 NA NA NA
5tpz 2 Q00960 99.45 0.0 X-RAY
 2016-12-14 TYR B:325 D:356 54.0 0.235 S -64.8 175.8 54.0 0.235 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q13224-f1 1 Q13224 100.0 0.0 TYR A:356 A:356 12.0 0.052 B -96.2 155.4