Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr12 13828782 . T A CCDS8662.1:NM_000834.3:c.1022aAt>aTt_NP_000825.2:p.341N>I Homo sapiens glutamate ionotropic receptor NMDA type subunit 2B (GRIN2B), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
7eu8 2 Q13224 100.0 0.0 EM
 2021-07-28 ASN B:341 B:341 102.0 0.637 S -87.6 87.1 102.0 0.637 0.0 NAG
 1.441
 ND2
 C1
ASN D:341 D:341 104.0 0.65 S -123.5 98.5 104.0 0.65 0.0 NAG
 3.735
 OD1
 O3
6wi1 2 ? 99.28 0.0 EM
 2020-07-15 ASN B:372 B:341 114.0 0.713 S -117.1 102.3 114.0 0.713 0.0 NAG
NAG
NAG
 4.184
6.606
1.438
 OD1
ND2
ND2
 N2
O5
C1
ASN D:372 D:341 113.0 0.706 S -117.1 102.3 113.0 0.706 0.0 NAG
NAG
NAG
 4.183
6.606
1.437
 OD1
ND2
ND2
 N2
O5
C1
5fxg 2 Q00960 98.91 0.0 EM
 2016-05-11 ASN B:316 B:341 70.0 NA S -112.9 106.5 70.0 NA NA
ASN D:316 D:341 70.0 NA S -112.9 106.5 70.0 NA NA
5fxh 2 Q00960 98.91 0.0 EM
 2016-05-11 ASN B:316 B:341 86.0 NA S -94.6 120.2 86.0 NA NA
ASN D:316 D:341 86.0 NA S -94.6 120.2 86.0 NA NA
5fxi 2 Q00960 98.91 0.0 EM
 2016-05-11 ASN B:316 B:341 86.0 NA S -83.4 120.9 86.0 NA NA
ASN D:316 D:341 84.0 NA S -83.4 120.9 84.0 NA NA
5fxj 2 Q00960 98.91 0.0 EM
 2016-05-25 ASN B:316 B:341 82.0 NA -92.1 107.7 82.0 NA NA
ASN D:316 D:341 81.0 NA -92.2 107.8 81.0 NA NA
5fxk 2 Q00960 98.91 0.0 EM
 2016-05-11 ASN B:316 B:341 86.0 NA S -69.8 123.7 86.0 NA NA
ASN D:316 D:341 89.0 NA S -69.8 123.7 89.0 NA NA
6whr 2 Q00960 98.91 0.0 EM
 2020-08-05 ASN B:372 B:341 88.0 0.55 E -140.6 135.3 88.0 0.55 0.0 NAG
 1.441
 ND2
 C1
ASN D:372 D:341 87.0 0.544 E -140.6 135.3 87.0 0.544 0.0 NAG
 1.440
 ND2
 C1
6whs 2 Q00960 98.91 0.0 EM
 2020-08-05 ASN B:372 B:341 125.0 0.781 S -119.9 83.1 125.0 0.781 0.0 NAG
 1.439
 ND2
 C1
ASN D:372 D:341 125.0 0.781 S -119.8 83.1 125.0 0.781 0.0 NAG
 1.439
 ND2
 C1
6wht 2 Q00960 98.91 0.0 EM
 2020-08-05 ASN B:372 B:341 133.0 0.831 S -99.9 98.9 133.0 0.831 0.0
ASN D:372 D:341 133.0 0.831 S -99.9 99.0 133.0 0.831 0.0
6whu 2 Q00960 98.91 0.0 EM
 2020-08-05 ASN B:372 B:341 91.0 0.569 S -103.9 15.0 91.0 0.569 0.0
ASN D:372 D:341 92.0 0.575 S -103.8 15.0 92.0 0.575 0.0
6whv 2 Q00960 98.91 0.0 EM
 2020-08-05 ASN B:372 B:341 97.0 0.606 S -99.2 90.2 97.0 0.606 0.0 NAG
NAG
 1.435
6.717
 ND2
ND2
 C1
C1
ASN D:372 D:341 132.0 0.825 S -72.9 66.5 132.0 0.825 0.0
6whw 2 ? 98.91 0.0 EM
 2020-07-15 ASN B:372 B:341 117.0 0.731 -125.2 106.9 117.0 0.731 0.0
ASN D:372 D:341 115.0 0.719 -125.2 106.9 115.0 0.719 0.0
6whx 2 ? 98.91 0.0 EM
 2020-07-15 ASN B:372 B:341 106.0 0.662 S -128.5 96.2 106.0 0.662 0.0
ASN D:372 D:341 138.0 0.863 S -117.9 83.7 138.0 0.863 0.0
6why 2 ? 98.91 0.0 EM
 2020-07-15 ASN B:372 B:341 113.0 0.706 S -111.7 84.3 113.0 0.706 0.0
ASN D:372 D:341 112.0 0.7 S -111.7 84.3 112.0 0.7 0.0
6wi0 2 Q00960 98.91 0.0 EM
 2020-07-15 ASN B:372 B:341 117.0 0.731 -147.0 97.2 117.0 0.731 0.0 NAG
 2.279
 ND2
 O3
ASN D:372 D:341 115.0 0.719 -147.0 97.3 115.0 0.719 0.0 NAG
 2.279
 ND2
 O3
4pe5 2 Q00960 97.82 0.0 X-RAY
 2014-06-04 ASN B:315 B:341 106.0 0.662 -142.0 76.3 106.0 0.662 0.0 NAG
 1.440
 ND2
 C1
ASN D:315 D:341 113.0 0.706 -144.3 68.4 113.0 0.706 0.0 NAG
 1.439
 ND2
 C1
6cna 2 Q00960 99.14 0.0 EM
 2018-10-03 ASN B:308 B:341 104.0 0.65 -101.9 116.6 104.0 0.65 0.0 NAG
 1.454
 ND2
 C1
ASN D:308 D:341 104.0 0.65 -101.9 116.6 104.0 0.65 0.0 NAG
 1.453
 ND2
 C1
5uow 3 A7XY94 86.86 0.0 EM
 2017-03-22 ASN D:336 D:336 110.0 0.688 S -87.0 73.7 110.0 0.688 0.0 NAG
NAG
 1.547
6.537
 ND2
ND2
 C1
C1
5up2 3 A7XY94 86.86 0.0 EM
 2017-03-22 ASN D:336 D:336 107.0 0.669 S -86.6 74.7 107.0 0.669 0.0 NAG
NAG
 1.493
6.484
 ND2
ND2
 C1
C1
5iou 2 A7XY94 85.78 0.0 EM
 2016-04-20 ASN C:336 B:336 89.0 NA S -112.1 94.2 89.0 NA NA
ASN D:336 D:336 90.0 NA S -112.5 94.2 90.0 NA NA
5iov 2 A7XY94 85.78 0.0 EM
 2016-04-20 ASN C:336 B:336 88.0 NA S -113.7 95.6 88.0 NA NA
ASN D:336 D:336 90.0 NA S -112.0 93.6 90.0 NA NA
5ipq 2 A7XY94 85.78 0.0 EM
 2016-04-20 ASN B:336 B:336 57.0 NA S -109.2 120.0 57.0 NA NA
ASN D:336 D:336 60.0 NA S -105.8 120.6 60.0 NA NA
5ipr 2 A7XY94 85.78 0.0 EM
 2016-04-20 ASN B:336 B:336 55.0 NA S -109.3 120.0 55.0 NA NA
ASN D:336 D:336 60.0 NA S -105.8 120.6 60.0 NA NA
5ips 2 A7XY94 85.78 0.0 EM
 2016-04-20 ASN B:336 B:336 57.0 NA S -109.2 120.0 57.0 NA NA
ASN D:336 D:336 60.0 NA S -105.9 120.6 60.0 NA NA
5ipt 2 A7XY94 85.78 0.0 EM
 2016-04-20 ASN B:336 B:336 57.0 NA S -109.3 120.0 57.0 NA NA
ASN D:336 D:336 61.0 NA S -105.8 120.6 61.0 NA NA
5ipu 2 A7XY94 85.78 0.0 EM
 2016-04-20 ASN B:336 B:336 57.0 NA S -109.2 120.0 57.0 NA NA
ASN D:336 D:336 59.0 NA S -105.8 120.6 59.0 NA NA
5ipv 2 A7XY94 85.78 0.0 EM
 2016-04-20 ASN B:336 B:336 61.0 NA S -105.8 120.7 61.0 NA NA
ASN D:336 D:336 58.0 NA S -105.7 120.6 58.0 NA NA
4tll 2 A7XY94 87.47 0.0 X-RAY
 2014-07-02 ASN B:317 B:336 105.0 0.656 -106.6 113.3 105.0 0.656 0.0 NAG
 1.447
 ND2
 C1
ASN D:317 D:336 122.0 0.762 -99.8 112.9 122.0 0.762 0.0
4tlm 2 A7XY94 87.47 0.0 X-RAY
 2014-07-02 ASN B:317 B:336 116.0 0.725 S -109.3 120.0 116.0 0.725 0.0 NAG
 2.832
 ND2
 C1
ASN D:317 D:336 67.0 NA S -105.8 120.7 67.0 NA NA
5ewj 2 Q13224 99.73 0.0 X-RAY
 2016-03-02 ASN B:311 B:341 118.0 0.738 S -125.8 45.3 118.0 0.738 0.0 NAG
HOH
 1.432
7.167
 ND2
OD1
 C1
O
ASN D:311 D:341 111.0 0.694 S -135.7 22.7 NA NA NA
5ewl 2 Q13224 99.73 0.0 X-RAY
 2016-03-02 ASN B:311 B:341 105.0 0.656 S -149.9 62.1 105.0 0.656 0.0 NAG
HOH
 1.433
7.176
 ND2
ND2
 C1
O
ASN D:311 D:341 115.0 0.719 S -116.0 4.8 NA NA NA
5ewm 2 Q13224 99.73 0.0 X-RAY
 2016-03-02 ASN B:311 B:341 116.0 0.725 S -133.6 40.0 116.0 0.725 0.0 NAG
HOH
 1.432
3.289
 ND2
N
 C1
O
ASN D:311 D:341 112.0 0.7 S -135.9 11.7 NA NA NA
3qel 2 Q00960 99.45 0.0 X-RAY
 2011-06-15 ASN B:311 B:341 110.0 0.688 -144.0 67.8 110.0 0.688 0.0 NAG
HOH
 1.441
8.627
 ND2
OD1
 C1
O
ASN D:311 D:341 113.0 0.706 S -118.2 23.8 113.0 0.706 0.0 NAG
 1.440
 ND2
 C1
3qem 2 Q00960 99.45 0.0 X-RAY
 2011-06-15 ASN B:311 B:341 117.0 0.731 S -82.4 85.0 117.0 0.731 0.0 NAG
 1.440
 ND2
 C1
ASN D:311 D:341 125.0 0.781 S -119.7 4.3 NA NA NA
5b3j 2 Q00960 99.45 0.0 X-RAY
 2016-05-11 ASN C:311 C:341 102.0 0.637 S -139.6 50.0 102.0 0.637 0.0 HOH
 3.133
 O
 O
ASN E:311 D:341 112.0 0.7 S -139.3 49.3 NA NA NA
3jpw 1 Q00960 99.45 0.0 X-RAY
 2009-12-08 ASN A:310 A:341 115.0 0.719 T -129.0 18.6 115.0 0.719 0.0 NAG
HOH
 1.441
3.560
 ND2
N
 C1
O
3jpy 1 Q00960 99.45 0.0 X-RAY
 2009-12-08 ASN A:310 A:341 114.0 0.713 T -145.0 18.3 114.0 0.713 0.0 NAG
 1.450
 ND2
 C1
6e7r 2 Q00960 99.45 0.0 X-RAY
 2019-01-30 ASN B:310 B:341 110.0 0.688 S -134.1 36.9 110.0 0.688 0.0 NAG
HOH
 1.447
2.720
 ND2
OD1
 C1
O
ASN D:310 D:341 115.0 0.719 S -129.5 24.3 NA NA NA
6e7s 2 Q00960 99.45 0.0 X-RAY
 2019-01-30 ASN B:310 B:341 111.0 0.694 S -141.1 37.5 111.0 0.694 0.0 NAG
HOH
 1.439
2.606
 ND2
OD1
 C1
O
ASN D:310 D:341 111.0 0.694 S -138.3 30.1 NA NA NA
6e7t 2 Q00960 99.45 0.0 X-RAY
 2019-01-30 ASN B:310 B:341 122.0 0.762 S -128.1 55.8 122.0 0.762 0.0 NAG
HOH
 1.441
2.544
 ND2
OD1
 C1
O
ASN D:310 D:341 122.0 0.762 S -132.0 50.4 NA NA NA
6e7u 2 Q00960 99.45 0.0 X-RAY
 2019-01-30 ASN B:310 B:341 115.0 0.719 S -129.0 48.3 115.0 0.719 0.0 NAG
HOH
 1.445
2.748
 ND2
OD1
 C1
O
ASN D:310 D:341 119.0 0.744 S -125.7 34.5 NA NA NA
6e7v 2 Q00960 99.45 0.0 X-RAY
 2019-01-30 ASN B:310 B:341 113.0 0.706 S -133.0 41.3 113.0 0.706 0.0 HOH
 2.644
 OD1
 O
ASN D:310 D:341 119.0 0.744 S -129.7 33.4 NA NA NA
6e7w 2 Q00960 99.45 0.0 X-RAY
 2019-01-30 ASN B:310 B:341 107.0 0.669 T -144.9 37.1 107.0 0.669 0.0 NAG
HOH
 1.438
3.061
 ND2
OD1
 C1
O
ASN D:310 D:341 112.0 0.7 S -143.5 31.2 NA NA NA
6e7x 2 Q00960 99.45 0.0 X-RAY
 2019-01-30 ASN B:310 B:341 109.0 0.681 S -136.3 40.6 109.0 0.681 0.0 NAG
HOH
 1.441
2.763
 ND2
OD1
 C1
O
ASN D:310 D:341 112.0 0.7 S -132.2 29.2 NA NA NA
5tpz 2 Q00960 99.45 0.0 X-RAY
 2016-12-14 ASN B:310 D:341 120.0 0.75 S -139.7 77.6 120.0 0.75 0.0 NAG
HOH
 1.451
9.691
 ND2
CB
 C1
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q13224-f1 1 Q13224 100.0 0.0 ASN A:341 A:341 113.0 0.706 S -118.6 80.9