Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr12 13906503 . C A CCDS8662.1:NM_000834.3:c.758gGc>gTc_NP_000825.2:p.253G>V Homo sapiens glutamate ionotropic receptor NMDA type subunit 2B (GRIN2B), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
7eu8 2 Q13224 100.0 0.0 EM
 2021-07-28 GLY B:253 B:253 61.0 0.813 T -131.9 -9.6 61.0 0.813 0.0
GLY D:253 D:253 127.0 1.0 360.0 -56.3 127.0 1.0 0.0
6wi1 2 ? 99.28 0.0 EM
 2020-07-15 GLY B:284 B:253 50.0 0.667 S -85.7 36.8 50.0 0.667 0.0
GLY D:284 D:253 50.0 0.667 S -85.8 36.8 50.0 0.667 0.0
5fxg 2 Q00960 98.91 0.0 EM
 2016-05-11 GLY B:228 B:253 64.0 0.853 T 108.3 -15.0 64.0 0.853 0.0
GLY D:228 D:253 64.0 0.853 T 108.3 -15.0 64.0 0.853 0.0
5fxh 2 Q00960 98.91 0.0 EM
 2016-05-11 GLY B:228 B:253 69.0 0.92 T 102.0 -20.6 69.0 0.92 0.0
GLY D:228 D:253 69.0 0.92 T 102.1 -20.7 69.0 0.92 0.0
5fxi 2 Q00960 98.91 0.0 EM
 2016-05-11 GLY B:228 B:253 64.0 0.853 T 88.0 -20.6 64.0 0.853 0.0
GLY D:228 D:253 64.0 0.853 T 88.0 -20.6 64.0 0.853 0.0
5fxj 2 Q00960 98.91 0.0 EM
 2016-05-25 GLY B:228 B:253 64.0 0.853 T 89.6 -21.4 64.0 0.853 0.0
GLY D:228 D:253 53.0 0.707 T 89.6 -21.4 53.0 0.707 0.0
5fxk 2 Q00960 98.91 0.0 EM
 2016-05-11 GLY B:228 B:253 81.0 1.0 T 81.3 3.7 81.0 1.0 0.0
GLY D:228 D:253 80.0 1.0 T 81.3 3.7 80.0 1.0 0.0
6whr 2 Q00960 98.91 0.0 EM
 2020-08-05 GLY B:284 B:253 60.0 0.8 T -141.0 1.3 60.0 0.8 0.0
GLY D:284 D:253 61.0 0.813 T -141.0 1.3 61.0 0.813 0.0
6whs 2 Q00960 98.91 0.0 EM
 2020-08-05 GLY B:284 B:253 50.0 0.667 S -138.0 36.0 50.0 0.667 0.0
GLY D:284 D:253 49.0 0.653 S -137.9 35.9 49.0 0.653 0.0
6wht 2 Q00960 98.91 0.0 EM
 2020-08-05 GLY B:284 B:253 51.0 0.68 T -69.1 -16.2 51.0 0.68 0.0
GLY D:284 D:253 50.0 0.667 T -69.1 -16.1 50.0 0.667 0.0
6whu 2 Q00960 98.91 0.0 EM
 2020-08-05 GLY B:284 B:253 66.0 0.88 T 72.1 29.6 66.0 0.88 0.0
GLY D:284 D:253 65.0 0.867 T 72.0 29.6 65.0 0.867 0.0
6whv 2 Q00960 98.91 0.0 EM
 2020-08-05 GLY B:284 B:253 53.0 0.707 T 115.4 -41.4 53.0 0.707 0.0
GLY D:284 D:253 39.0 0.52 S 110.6 -42.3 39.0 0.52 0.0
6whw 2 ? 98.91 0.0 EM
 2020-07-15 GLY B:284 B:253 56.0 0.747 T 121.3 -9.3 56.0 0.747 0.0
GLY D:284 D:253 58.0 0.773 T 121.3 -9.3 58.0 0.773 0.0
6whx 2 ? 98.91 0.0 EM
 2020-07-15 GLY B:284 B:253 37.0 0.493 S 121.1 -43.8 37.0 0.493 0.0
GLY D:284 D:253 66.0 0.88 S 116.5 -34.7 64.0 0.853 0.027 B:None:0.027
6why 2 ? 98.91 0.0 EM
 2020-07-15 GLY B:284 B:253 71.0 0.947 T 142.3 -21.5 71.0 0.947 0.0
GLY D:284 D:253 71.0 0.947 T 142.3 -21.5 71.0 0.947 0.0
6wi0 2 Q00960 98.91 0.0 EM
 2020-07-15 GLY B:284 B:253 58.0 0.773 T 131.3 -38.0 58.0 0.773 0.0
GLY D:284 D:253 57.0 0.76 T 131.3 -38.0 57.0 0.76 0.0
4pe5 2 Q00960 97.82 0.0 X-RAY
 2014-06-04 GLY B:227 B:253 57.0 0.76 T 99.0 -6.8 57.0 0.76 0.0
GLY D:227 D:253 58.0 0.773 T 98.1 -16.3 58.0 0.773 0.0
6cna 2 Q00960 99.14 0.0 EM
 2018-10-03 GLY B:220 B:253 41.0 0.547 T 72.9 13.6 41.0 0.547 0.0
GLY D:220 D:253 40.0 0.533 T 72.9 13.6 40.0 0.533 0.0
5uow 3 A7XY94 86.86 0.0 EM
 2017-03-22 GLY D:248 D:248 60.0 0.8 T 97.2 -31.8 60.0 0.8 0.0
5up2 3 A7XY94 86.86 0.0 EM
 2017-03-22 GLY D:248 D:248 61.0 0.813 T 97.3 -31.8 61.0 0.813 0.0
5iou 2 A7XY94 85.78 0.0 EM
 2016-04-20 GLY C:248 B:248 68.0 0.907 S 92.2 -23.5 68.0 0.907 0.0
GLY D:248 D:248 68.0 0.907 T 91.4 -27.5 68.0 0.907 0.0
5iov 2 A7XY94 85.78 0.0 EM
 2016-04-20 GLY C:248 B:248 51.0 0.68 T 80.8 -2.7 51.0 0.68 0.0
GLY D:248 D:248 65.0 0.867 T 89.0 -21.4 65.0 0.867 0.0
5ipq 2 A7XY94 85.78 0.0 EM
 2016-04-20 GLY B:248 B:248 80.0 1.0 T 96.6 -30.9 80.0 1.0 0.0
GLY D:248 D:248 78.0 1.0 T 97.3 -31.8 78.0 1.0 0.0
5ipr 2 A7XY94 85.78 0.0 EM
 2016-04-20 GLY B:248 B:248 81.0 1.0 T 96.7 -30.9 81.0 1.0 0.0
GLY D:248 D:248 77.0 1.0 T 97.3 -31.8 77.0 1.0 0.0
5ips 2 A7XY94 85.78 0.0 EM
 2016-04-20 GLY B:248 B:248 81.0 1.0 T 96.6 -30.9 81.0 1.0 0.0
GLY D:248 D:248 81.0 1.0 T 97.4 -31.9 81.0 1.0 0.0
5ipt 2 A7XY94 85.78 0.0 EM
 2016-04-20 GLY B:248 B:248 83.0 1.0 T 96.6 -30.8 83.0 1.0 0.0
GLY D:248 D:248 80.0 1.0 T 97.3 -31.8 80.0 1.0 0.0
5ipu 2 A7XY94 85.78 0.0 EM
 2016-04-20 GLY B:248 B:248 81.0 1.0 T 96.6 -30.8 81.0 1.0 0.0
GLY D:248 D:248 79.0 1.0 T 97.3 -31.8 79.0 1.0 0.0
5ipv 2 A7XY94 85.78 0.0 EM
 2016-04-20 GLY B:248 B:248 79.0 1.0 T 97.4 -31.9 79.0 1.0 0.0
GLY D:248 D:248 79.0 1.0 T 97.5 -31.9 79.0 1.0 0.0
4tll 2 A7XY94 87.47 0.0 X-RAY
 2014-07-02 GLY B:229 B:248 62.0 0.827 T 91.9 -20.9 62.0 0.827 0.0
GLY D:229 D:248 55.0 0.733 T 92.2 -20.6 55.0 0.733 0.0
4tlm 2 A7XY94 87.47 0.0 X-RAY
 2014-07-02 GLY B:229 B:248 65.0 0.867 T 96.6 -30.8 65.0 0.867 0.0
GLY D:229 D:248 47.0 0.627 T 97.3 -31.8 47.0 0.627 0.0
5ewj 2 Q13224 99.73 0.0 X-RAY
 2016-03-02 GLY B:223 B:253 59.0 0.787 T 89.8 -6.8 59.0 0.787 0.0 HOH
 4.844
 N
 O
GLY D:223 D:253 58.0 0.773 T 86.6 -7.5 NA NA NA
5ewl 2 Q13224 99.73 0.0 X-RAY
 2016-03-02 GLY B:223 B:253 61.0 0.813 T 83.1 1.2 61.0 0.813 0.0 HOH
 7.967
 O
 O
GLY D:223 D:253 60.0 0.8 T 86.9 -3.9 NA NA NA
5ewm 2 Q13224 99.73 0.0 X-RAY
 2016-03-02 GLY B:223 B:253 57.0 0.76 T 100.2 -16.5 57.0 0.76 0.0 HOH
 4.952
 N
 O
GLY D:223 D:253 55.0 0.733 T 98.3 -15.5 NA NA NA
3qel 2 Q00960 99.45 0.0 X-RAY
 2011-06-15 GLY B:223 B:253 56.0 0.747 T 98.1 -16.7 56.0 0.747 0.0 HOH
 5.625
 N
 O
GLY D:223 D:253 56.0 0.747 T 82.8 -6.6 56.0 0.747 0.0 HOH
 4.631
 N
 O
3qem 2 Q00960 99.45 0.0 X-RAY
 2011-06-15 GLY B:223 B:253 60.0 0.8 S 80.5 -22.1 60.0 0.8 0.0
GLY D:223 D:253 59.0 0.787 T 86.4 -14.3 NA NA NA
5b3j 2 Q00960 99.45 0.0 X-RAY
 2016-05-11 GLY C:223 C:253 73.0 0.973 S -146.3 17.5 73.0 0.973 0.0
GLY E:223 NA:NA DO NA DO DO DO NA NA NA
3jpw 1 Q00960 99.45 0.0 X-RAY
 2009-12-08 GLY A:222 A:253 55.0 0.733 T 91.0 -6.4 55.0 0.733 0.0
3jpy 1 Q00960 99.45 0.0 X-RAY
 2009-12-08 GLY A:222 A:253 64.0 0.853 S 100.8 -37.0 64.0 0.853 0.0 HOH
 9.108
 N
 O
6e7r 2 Q00960 99.45 0.0 X-RAY
 2019-01-30 GLY B:222 B:253 57.0 0.76 T 99.8 -21.2 57.0 0.76 0.0 HOH
 9.044
 N
 O
GLY D:222 D:253 52.0 0.693 T -81.0 -4.7 NA NA NA
6e7s 2 Q00960 99.45 0.0 X-RAY
 2019-01-30 GLY B:222 B:253 57.0 0.76 T 86.9 -14.9 57.0 0.76 0.0
GLY D:222 D:253 60.0 0.8 T 84.0 -13.6 NA NA NA
6e7t 2 Q00960 99.45 0.0 X-RAY
 2019-01-30 GLY B:222 B:253 59.0 0.787 T 92.1 -12.8 59.0 0.787 0.0 HOH
 7.820
 O
 O
GLY D:222 D:253 60.0 0.8 T 86.7 -11.2 NA NA NA
6e7u 2 Q00960 99.45 0.0 X-RAY
 2019-01-30 GLY B:222 B:253 59.0 0.787 T 75.9 8.2 59.0 0.787 0.0 HOH
 8.928
 C
 O
GLY D:222 D:253 50.0 0.667 T -76.0 -5.2 NA NA NA
6e7v 2 Q00960 99.45 0.0 X-RAY
 2019-01-30 GLY B:222 B:253 59.0 0.787 T 97.6 -20.1 59.0 0.787 0.0 HOH
 8.962
 N
 O
GLY D:222 D:253 58.0 0.773 T 97.6 -21.3 NA NA NA
6e7w 2 Q00960 99.45 0.0 X-RAY
 2019-01-30 GLY B:222 B:253 59.0 0.787 T 97.6 -18.2 59.0 0.787 0.0 HOH
 9.242
 N
 O
GLY D:222 D:253 58.0 0.773 T 90.6 -18.1 NA NA NA
6e7x 2 Q00960 99.45 0.0 X-RAY
 2019-01-30 GLY B:222 B:253 57.0 0.76 T 96.9 -22.6 57.0 0.76 0.0 HOH
 9.310
 O
 O
GLY D:222 D:253 59.0 0.787 T 88.8 -15.8 NA NA NA
5tpz 2 Q00960 99.45 0.0 X-RAY
 2016-12-14 GLY B:222 D:253 66.0 0.88 T 98.3 -12.3 66.0 0.88 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q13224-f1 1 Q13224 100.0 0.0 GLY A:253 A:253 46.0 0.613 T 99.3 -16.2