Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr12 13906555 . C A CCDS8662.1:NM_000834.3:c.706Gaa>Taa_NP_000825.2:p.236E>* Homo sapiens glutamate ionotropic receptor NMDA type subunit 2B (GRIN2B), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
7eu8 2 Q13224 100.0 0.0 EM
 2021-07-28 GLU B:236 B:236 46.0 NA H -70.4 -34.7 46.0 NA NA
GLU D:236 D:236 43.0 NA H -75.2 -31.2 43.0 NA NA
6wi1 2 ? 99.28 0.0 EM
 2020-07-15 GLU B:267 B:236 17.0 0.089 H -60.9 -36.5 17.0 0.089 0.0
GLU D:267 D:236 18.0 0.095 H -60.9 -36.5 18.0 0.095 0.0
5fxg 2 Q00960 98.91 0.0 EM
 2016-05-11 GLU B:211 B:236 43.0 NA H -58.8 -34.9 43.0 NA NA
GLU D:211 D:236 43.0 NA H -58.7 -34.9 43.0 NA NA
5fxh 2 Q00960 98.91 0.0 EM
 2016-05-11 GLU B:211 B:236 40.0 NA H -64.3 -37.4 40.0 NA NA
GLU D:211 D:236 40.0 NA H -64.4 -37.3 40.0 NA NA
5fxi 2 Q00960 98.91 0.0 EM
 2016-05-11 GLU B:211 B:236 29.0 NA H -59.2 -32.1 29.0 NA NA
GLU D:211 D:236 27.0 NA H -59.3 -32.1 27.0 NA NA
5fxj 2 Q00960 98.91 0.0 EM
 2016-05-25 GLU B:211 B:236 38.0 NA T -71.9 -14.5 38.0 NA NA
GLU D:211 D:236 39.0 NA T -71.8 -14.6 39.0 NA NA
5fxk 2 Q00960 98.91 0.0 EM
 2016-05-11 GLU B:211 B:236 43.0 NA H -57.9 -36.6 43.0 NA NA
GLU D:211 D:236 44.0 NA H -57.9 -36.6 44.0 NA NA
6whr 2 Q00960 98.91 0.0 EM
 2020-08-05 GLU B:267 B:236 34.0 0.179 H -53.3 -23.3 34.0 0.179 0.0
GLU D:267 D:236 34.0 0.179 H -53.4 -23.2 34.0 0.179 0.0
6whs 2 Q00960 98.91 0.0 EM
 2020-08-05 GLU B:267 B:236 32.0 NA H -66.2 -34.0 32.0 NA NA
GLU D:267 D:236 31.0 NA H -66.2 -34.0 31.0 NA NA
6wht 2 Q00960 98.91 0.0 EM
 2020-08-05 GLU B:267 B:236 91.0 0.479 H -60.3 -27.9 91.0 0.479 0.0
GLU D:267 D:236 90.0 0.474 H -60.3 -27.9 90.0 0.474 0.0
6whu 2 Q00960 98.91 0.0 EM
 2020-08-05 GLU B:267 B:236 47.0 0.247 H -57.6 -34.1 47.0 0.247 0.0
GLU D:267 D:236 50.0 0.263 H -57.6 -34.1 50.0 0.263 0.0
6whv 2 Q00960 98.91 0.0 EM
 2020-08-05 GLU B:267 B:236 56.0 0.295 H -59.3 -25.3 56.0 0.295 0.0
GLU D:267 D:236 53.0 0.279 H -58.6 -34.1 53.0 0.279 0.0
6whw 2 ? 98.91 0.0 EM
 2020-07-15 GLU B:267 B:236 47.0 0.247 H -53.7 -38.1 47.0 0.247 0.0
GLU D:267 D:236 47.0 0.247 H -53.8 -38.1 47.0 0.247 0.0
6whx 2 ? 98.91 0.0 EM
 2020-07-15 GLU B:267 B:236 65.0 0.342 H -53.3 -46.8 65.0 0.342 0.0
GLU D:267 D:236 21.0 NA H -70.0 -24.8 21.0 NA NA
6why 2 ? 98.91 0.0 EM
 2020-07-15 GLU B:267 B:236 107.0 0.563 H -70.0 -23.8 107.0 0.563 0.0
GLU D:267 D:236 109.0 0.574 H -70.1 -23.7 109.0 0.574 0.0
6wi0 2 Q00960 98.91 0.0 EM
 2020-07-15 GLU B:267 B:236 66.0 0.347 H -61.3 -26.1 66.0 0.347 0.0
GLU D:267 D:236 64.0 0.337 H -61.2 -26.1 64.0 0.337 0.0
4pe5 2 Q00960 97.82 0.0 X-RAY
 2014-06-04 GLU B:210 B:236 44.0 0.232 H -71.5 -35.9 25.0 0.132 0.1 A:P35439:0.1
 QEL
 2.388
 OE2
 O2
GLU D:210 D:236 40.0 0.211 H -70.2 -42.0 22.0 0.116 0.095 C:P35439:0.095
 QEL
 2.293
 OE2
 O2
6cna 2 Q00960 99.14 0.0 EM
 2018-10-03 GLU B:203 B:236 44.0 0.232 H -59.2 -42.8 44.0 0.232 0.0
GLU D:203 D:236 44.0 0.232 H -59.3 -42.7 44.0 0.232 0.0
5uow 3 A7XY94 86.86 0.0 EM
 2017-03-22 GLU D:231 D:231 32.0 NA H -56.4 -39.7 32.0 NA NA
5up2 3 A7XY94 86.86 0.0 EM
 2017-03-22 GLU D:231 D:231 32.0 NA H -56.4 -39.7 32.0 NA NA
5iou 2 A7XY94 85.78 0.0 EM
 2016-04-20 GLU C:231 B:231 35.0 NA H -76.8 -36.4 35.0 NA NA
GLU D:231 D:231 37.0 NA H -77.2 -36.3 37.0 NA NA
5iov 2 A7XY94 85.78 0.0 EM
 2016-04-20 GLU C:231 B:231 34.0 NA H -81.9 -34.3 34.0 NA NA QEM
 6.741
 CB
 C19
GLU D:231 D:231 31.0 NA H -80.3 -36.5 31.0 NA NA QEM
 6.740
 CB
 O
5ipq 2 A7XY94 85.78 0.0 EM
 2016-04-20 GLU B:231 B:231 53.0 NA H -56.2 -38.5 53.0 NA NA
GLU D:231 D:231 54.0 NA H -56.6 -39.6 54.0 NA NA
5ipr 2 A7XY94 85.78 0.0 EM
 2016-04-20 GLU B:231 B:231 53.0 NA H -56.2 -38.4 53.0 NA NA
GLU D:231 D:231 55.0 NA H -56.7 -39.6 55.0 NA NA
5ips 2 A7XY94 85.78 0.0 EM
 2016-04-20 GLU B:231 B:231 53.0 NA H -56.4 -38.4 53.0 NA NA
GLU D:231 D:231 54.0 NA H -56.6 -39.6 54.0 NA NA
5ipt 2 A7XY94 85.78 0.0 EM
 2016-04-20 GLU B:231 B:231 54.0 NA H -56.2 -38.5 54.0 NA NA
GLU D:231 D:231 53.0 NA H -56.6 -39.6 53.0 NA NA
5ipu 2 A7XY94 85.78 0.0 EM
 2016-04-20 GLU B:231 B:231 52.0 NA H -56.2 -38.5 52.0 NA NA
GLU D:231 D:231 55.0 NA H -56.6 -39.6 55.0 NA NA
5ipv 2 A7XY94 85.78 0.0 EM
 2016-04-20 GLU B:231 B:231 54.0 NA H -56.5 -39.7 54.0 NA NA
GLU D:231 D:231 55.0 NA H -56.6 -39.8 55.0 NA NA
4tll 2 A7XY94 87.47 0.0 X-RAY
 2014-07-02 GLU B:212 B:231 32.0 0.168 H -60.8 -44.8 23.0 0.121 0.047 A:C0KD18:0.047
 QEM
 2.506
 OE2
 O
GLU D:212 D:231 32.0 0.168 H -61.6 -45.4 32.0 0.168 0.0 QEM
 2.492
 OE2
 O
4tlm 2 A7XY94 87.47 0.0 X-RAY
 2014-07-02 GLU B:212 B:231 34.0 0.179 H -56.2 -38.5 21.0 0.111 0.068 A:C0KD18:0.068
 QEM
 2.930
 OE2
 O
GLU D:212 D:231 18.0 NA H -56.5 -39.7 18.0 NA NA QEM
 6.499
 CB
 O
5ewj 2 Q13224 99.73 0.0 X-RAY
 2016-03-02 GLU B:206 B:236 40.0 0.211 H -69.6 -43.2 25.0 0.132 0.079 A:Q91977:0.079
 QEL
HOH
 2.551
3.879
 OE2
OE2
 O2
O
GLU D:206 D:236 41.0 0.216 H -70.2 -43.2 NA NA NA
5ewl 2 Q13224 99.73 0.0 X-RAY
 2016-03-02 GLU B:206 B:236 41.0 0.216 H -68.0 -42.7 30.0 0.158 0.058 A:Q91977:0.058
 5SL
HOH
 2.778
5.279
 OE2
N
 N5
O
GLU D:206 D:236 38.0 0.2 H -67.3 -42.8 NA NA NA
5ewm 2 Q13224 99.73 0.0 X-RAY
 2016-03-02 GLU B:206 B:236 38.0 0.2 H -71.8 -39.0 31.0 0.163 0.037 A:Q91977:0.037
 HOH
 3.014
 OE2
 O
GLU D:206 D:236 39.0 0.205 H -72.1 -38.7 NA NA NA
3qel 2 Q00960 99.45 0.0 X-RAY
 2011-06-15 GLU B:206 B:236 37.0 0.195 H -69.7 -42.1 26.0 0.137 0.058 A:Q91977:0.058
 QEL
HOH
 2.448
3.694
 OE2
OE2
 O2
O
GLU D:206 D:236 43.0 0.226 H -64.9 -45.0 43.0 0.226 0.0 QEL
HOH
 2.483
3.842
 OE2
OE2
 O2
O
3qem 2 Q00960 99.45 0.0 X-RAY
 2011-06-15 GLU B:206 B:236 41.0 0.216 H -64.3 -41.3 21.0 0.111 0.105 A:Q91977:0.105
 QEM
 2.718
 OE2
 O
GLU D:206 D:236 41.0 0.216 H -74.5 -41.0 NA NA NA
5b3j 2 Q00960 99.45 0.0 X-RAY
 2016-05-11 GLU C:206 C:236 24.0 NA H -74.5 -24.3 24.0 NA NA
GLU E:206 D:236 44.0 NA H -75.1 -24.8 NA NA NA
3jpw 1 Q00960 99.45 0.0 X-RAY
 2009-12-08 GLU A:205 A:236 42.0 0.221 H -69.0 -41.9 42.0 0.221 0.0 HOH
 6.256
 N
 O
3jpy 1 Q00960 99.45 0.0 X-RAY
 2009-12-08 GLU A:205 A:236 48.0 0.253 H -62.0 -44.0 48.0 0.253 0.0 HOH
 9.223
 N
 O
6e7r 2 Q00960 99.45 0.0 X-RAY
 2019-01-30 GLU B:205 B:236 40.0 0.211 H -63.9 -41.1 28.0 0.147 0.064 A:A0A1L8F5J9:0.063
 HYS
CL
HOH
 2.846
5.119
2.869
 OE2
N
OE2
 N20
CL
O
GLU D:205 D:236 40.0 0.211 H -59.1 -44.7 NA NA NA
6e7s 2 Q00960 99.45 0.0 X-RAY
 2019-01-30 GLU B:205 B:236 40.0 0.211 H -74.8 -40.6 26.0 0.137 0.074 A:A0A1L8F5J9:0.074
 HZ4
CL
HOH
 3.107
5.550
2.720
 OE2
N
OE2
 N22
CL
O
GLU D:205 D:236 43.0 0.226 H -73.6 -45.4 NA NA NA
6e7t 2 Q00960 99.45 0.0 X-RAY
 2019-01-30 GLU B:205 B:236 40.0 0.211 H -69.1 -40.5 27.0 0.142 0.069 A:A0A1L8F5J9:0.068
 HYY
HOH
 2.986
2.761
 OE2
OE2
 N23
O
GLU D:205 D:236 39.0 0.205 H -64.1 -47.5 NA NA NA
6e7u 2 Q00960 99.45 0.0 X-RAY
 2019-01-30 GLU B:205 B:236 40.0 0.211 H -64.9 -36.0 26.0 0.137 0.074 A:A0A1L8F5J9:0.074
 HX7
CL
HOH
 2.848
5.199
2.788
 OE2
N
OE2
 NAV
CL
O
GLU D:205 D:236 40.0 0.211 H -63.0 -44.4 NA NA NA
6e7v 2 Q00960 99.45 0.0 X-RAY
 2019-01-30 GLU B:205 B:236 41.0 0.216 H -70.0 -36.9 30.0 0.158 0.058 A:A0A1L8F5J9:0.058
 T88
CL
HOH
 2.884
5.589
4.620
 OE2
N
CG
 N24
CL
O
GLU D:205 D:236 42.0 0.221 H -63.4 -41.8 NA NA NA
6e7w 2 Q00960 99.45 0.0 X-RAY
 2019-01-30 GLU B:205 B:236 40.0 0.211 H -67.9 -45.1 27.0 0.142 0.069 A:A0A1L8F5J9:0.068
 HXM
CL
HOH
 2.745
5.417
4.876
 OE2
N
N
 N23
CL
O
GLU D:205 D:236 43.0 0.226 H -62.4 -47.3 NA NA NA
6e7x 2 Q00960 99.45 0.0 X-RAY
 2019-01-30 GLU B:205 B:236 40.0 0.211 H -65.7 -42.4 27.0 0.142 0.069 A:A0A1L8F5J9:0.068
 T97
HOH
 2.896
3.863
 OE2
CG
 N24
O
GLU D:205 D:236 41.0 0.216 H -61.3 -46.4 NA NA NA
5tpz 2 Q00960 99.45 0.0 X-RAY
 2016-12-14 GLU B:205 D:236 47.0 0.247 H -69.0 -31.8 36.0 0.189 0.058 A:Q91977:0.058

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q13224-f1 1 Q13224 100.0 0.0 GLU A:236 A:236 36.0 0.189 H -58.1 -38.4