Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr12 | 13906558 | . | C | A | CCDS8662.1:NM_000834.3:c.703Gaa>Taa_NP_000825.2:p.235E>* | Homo sapiens glutamate ionotropic receptor NMDA type subunit 2B (GRIN2B), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 7eu8 | 2 | Q13224 | 100.0 | 0.0 |
EM |
2021-07-28 | GLU | B:235 | B:235 | 80.0 | NA | H | -61.4 | -42.9 | 71.0 | NA | NA |
A:Q05586:NA |
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| GLU | D:235 | D:235 | 89.0 | NA | H | -61.4 | -43.0 | 68.0 | NA | NA |
C:Q05586:NA |
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| 6wi1 | 2 | ? | 99.28 | 0.0 |
EM |
2020-07-15 | GLU | B:266 | B:235 | 132.0 | 0.695 | H | -61.5 | -38.6 | 132.0 | 0.695 | 0.0 | ||||||
| GLU | D:266 | D:235 | 127.0 | 0.668 | H | -61.4 | -38.7 | 127.0 | 0.668 | 0.0 | |||||||||||||
| 5fxg | 2 | Q00960 | 98.91 | 0.0 |
EM |
2016-05-11 | GLU | B:210 | B:235 | 81.0 | NA | H | -69.4 | -53.6 | 81.0 | NA | NA | ||||||
| GLU | D:210 | D:235 | 81.0 | NA | H | -69.3 | -53.6 | 81.0 | NA | NA | |||||||||||||
| 5fxh | 2 | Q00960 | 98.91 | 0.0 |
EM |
2016-05-11 | GLU | B:210 | B:235 | 91.0 | NA | H | -53.9 | -40.7 | 91.0 | NA | NA | ||||||
| GLU | D:210 | D:235 | 88.0 | NA | H | -53.9 | -40.7 | 88.0 | NA | NA | |||||||||||||
| 5fxi | 2 | Q00960 | 98.91 | 0.0 |
EM |
2016-05-11 | GLU | B:210 | B:235 | 84.0 | NA | H | -62.2 | -57.2 | 84.0 | NA | NA | ||||||
| GLU | D:210 | D:235 | 84.0 | NA | H | -62.2 | -57.1 | 84.0 | NA | NA | |||||||||||||
| 5fxj | 2 | Q00960 | 98.91 | 0.0 |
EM |
2016-05-25 | GLU | B:210 | B:235 | 95.0 | NA | T | -61.0 | -44.8 | 95.0 | NA | NA | ||||||
| GLU | D:210 | D:235 | 93.0 | NA | T | -61.1 | -44.7 | 93.0 | NA | NA | |||||||||||||
| 5fxk | 2 | Q00960 | 98.91 | 0.0 |
EM |
2016-05-11 | GLU | B:210 | B:235 | 81.0 | NA | H | -61.6 | -40.4 | 81.0 | NA | NA | ||||||
| GLU | D:210 | D:235 | 81.0 | NA | H | -61.7 | -40.3 | 81.0 | NA | NA | |||||||||||||
| 6whr | 2 | Q00960 | 98.91 | 0.0 |
EM |
2020-08-05 | GLU | B:266 | B:235 | 76.0 | NA | H | -81.0 | -57.6 | 76.0 | NA | NA | ||||||
| GLU | D:266 | D:235 | 74.0 | NA | H | -81.1 | -57.5 | 74.0 | NA | NA | |||||||||||||
| 6whs | 2 | Q00960 | 98.91 | 0.0 |
EM |
2020-08-05 | GLU | B:266 | B:235 | 78.0 | NA | T | -81.0 | -55.3 | 78.0 | NA | NA | ||||||
| GLU | D:266 | D:235 | 76.0 | NA | T | -81.1 | -55.3 | 76.0 | NA | NA | |||||||||||||
| 6wht | 2 | Q00960 | 98.91 | 0.0 |
EM |
2020-08-05 | GLU | B:266 | B:235 | 71.0 | NA | H | -64.6 | -58.7 | 71.0 | NA | NA | ||||||
| GLU | D:266 | D:235 | 72.0 | NA | H | -64.7 | -58.6 | 72.0 | NA | NA | |||||||||||||
| 6whu | 2 | Q00960 | 98.91 | 0.0 |
EM |
2020-08-05 | GLU | B:266 | B:235 | 134.0 | 0.705 | H | -64.9 | -51.1 | 134.0 | 0.705 | 0.0 | ||||||
| GLU | D:266 | D:235 | 133.0 | 0.7 | H | -64.9 | -51.1 | 133.0 | 0.7 | 0.0 | |||||||||||||
| 6whv | 2 | Q00960 | 98.91 | 0.0 |
EM |
2020-08-05 | GLU | B:266 | B:235 | 117.0 | 0.616 | H | -78.2 | -61.1 | 117.0 | 0.616 | 0.0 | ||||||
| GLU | D:266 | D:235 | 123.0 | 0.647 | H | -62.8 | -53.4 | 123.0 | 0.647 | 0.0 | |||||||||||||
| 6whw | 2 | ? | 98.91 | 0.0 |
EM |
2020-07-15 | GLU | B:266 | B:235 | 114.0 | 0.6 | H | -66.5 | -46.8 | 114.0 | 0.6 | 0.0 | ||||||
| GLU | D:266 | D:235 | 116.0 | 0.611 | H | -66.4 | -46.9 | 116.0 | 0.611 | 0.0 | |||||||||||||
| 6whx | 2 | ? | 98.91 | 0.0 |
EM |
2020-07-15 | GLU | B:266 | B:235 | 147.0 | 0.774 | H | -66.4 | -41.5 | 147.0 | 0.774 | 0.0 | ||||||
| GLU | D:266 | D:235 | 82.0 | NA | H | -56.9 | -53.5 | 82.0 | NA | NA | |||||||||||||
| 6why | 2 | ? | 98.91 | 0.0 |
EM |
2020-07-15 | GLU | B:266 | B:235 | 76.0 | NA | H | -54.9 | -54.5 | 76.0 | NA | NA | ||||||
| GLU | D:266 | D:235 | 76.0 | NA | H | -54.9 | -54.4 | 76.0 | NA | NA | |||||||||||||
| 6wi0 | 2 | Q00960 | 98.91 | 0.0 |
EM |
2020-07-15 | GLU | B:266 | B:235 | 119.0 | 0.626 | H | -74.4 | -47.0 | 116.0 | 0.611 | 0.015 |
A:P35439:0.016 |
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| GLU | D:266 | D:235 | 119.0 | 0.626 | H | -74.4 | -47.0 | 116.0 | 0.611 | 0.015 |
C:P35439:0.016 |
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| 4pe5 | 2 | Q00960 | 97.82 | 0.0 |
X-RAY |
2014-06-04 | GLU | B:209 | B:235 | 76.0 | NA | H | -60.9 | -40.2 | 76.0 | NA | NA |
QEL |
8.424 |
CB |
C2 |
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| GLU | D:209 | D:235 | 84.0 | NA | H | -65.1 | -34.6 | 84.0 | NA | NA |
QEL |
8.547 |
CB |
C2 |
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| 6cna | 2 | Q00960 | 99.14 | 0.0 |
EM |
2018-10-03 | GLU | B:202 | B:235 | 69.0 | NA | H | -52.3 | -55.3 | 69.0 | NA | NA | ||||||
| GLU | D:202 | D:235 | 70.0 | NA | H | -52.3 | -55.2 | 70.0 | NA | NA | |||||||||||||
| 5uow | 3 | A7XY94 | 86.86 | 0.0 |
EM |
2017-03-22 | GLU | D:230 | D:230 | 65.0 | NA | H | -64.4 | -45.2 | 65.0 | NA | NA | ||||||
| 5up2 | 3 | A7XY94 | 86.86 | 0.0 |
EM |
2017-03-22 | GLU | D:230 | D:230 | 65.0 | NA | H | -64.4 | -45.2 | 65.0 | NA | NA | ||||||
| 5iou | 2 | A7XY94 | 85.78 | 0.0 |
EM |
2016-04-20 | GLU | C:230 | B:230 | 88.0 | NA | H | -63.9 | -25.9 | 88.0 | NA | NA | ||||||
| GLU | D:230 | D:230 | 91.0 | NA | H | -63.9 | -26.1 | 91.0 | NA | NA | |||||||||||||
| 5iov | 2 | A7XY94 | 85.78 | 0.0 |
EM |
2016-04-20 | GLU | C:230 | B:230 | 89.0 | NA | H | -63.5 | -25.6 | 89.0 | NA | NA |
QEM |
8.583 |
CB |
C19 |
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| GLU | D:230 | D:230 | 89.0 | NA | H | -64.3 | -25.4 | 89.0 | NA | NA |
QEM |
9.133 |
CB |
C21 |
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| 5ipq | 2 | A7XY94 | 85.78 | 0.0 |
EM |
2016-04-20 | GLU | B:230 | B:230 | 72.0 | NA | H | -64.5 | -45.2 | 72.0 | NA | NA | ||||||
| GLU | D:230 | D:230 | 67.0 | NA | H | -64.4 | -45.1 | 67.0 | NA | NA | |||||||||||||
| 5ipr | 2 | A7XY94 | 85.78 | 0.0 |
EM |
2016-04-20 | GLU | B:230 | B:230 | 71.0 | NA | H | -64.5 | -45.1 | 71.0 | NA | NA | ||||||
| GLU | D:230 | D:230 | 66.0 | NA | H | -64.4 | -45.0 | 66.0 | NA | NA | |||||||||||||
| 5ips | 2 | A7XY94 | 85.78 | 0.0 |
EM |
2016-04-20 | GLU | B:230 | B:230 | 70.0 | NA | H | -64.5 | -45.1 | 70.0 | NA | NA | ||||||
| GLU | D:230 | D:230 | 68.0 | NA | H | -64.4 | -45.1 | 68.0 | NA | NA | |||||||||||||
| 5ipt | 2 | A7XY94 | 85.78 | 0.0 |
EM |
2016-04-20 | GLU | B:230 | B:230 | 70.0 | NA | H | -64.5 | -45.2 | 70.0 | NA | NA | ||||||
| GLU | D:230 | D:230 | 66.0 | NA | H | -64.4 | -45.1 | 66.0 | NA | NA | |||||||||||||
| 5ipu | 2 | A7XY94 | 85.78 | 0.0 |
EM |
2016-04-20 | GLU | B:230 | B:230 | 70.0 | NA | H | -64.5 | -45.2 | 70.0 | NA | NA | ||||||
| GLU | D:230 | D:230 | 66.0 | NA | H | -64.4 | -45.1 | 66.0 | NA | NA | |||||||||||||
| 5ipv | 2 | A7XY94 | 85.78 | 0.0 |
EM |
2016-04-20 | GLU | B:230 | B:230 | 67.0 | NA | H | -64.4 | -45.2 | 67.0 | NA | NA | ||||||
| GLU | D:230 | D:230 | 68.0 | NA | H | -64.4 | -45.0 | 68.0 | NA | NA | |||||||||||||
| 4tll | 2 | A7XY94 | 87.47 | 0.0 |
X-RAY |
2014-07-02 | GLU | B:211 | B:230 | 70.0 | NA | H | -66.5 | -40.4 | 70.0 | NA | NA |
QEM |
8.971 |
CB |
C21 |
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| GLU | D:211 | D:230 | 66.0 | NA | H | -65.6 | -40.1 | 66.0 | NA | NA |
QEM |
8.779 |
CB |
C21 |
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| 4tlm | 2 | A7XY94 | 87.47 | 0.0 |
X-RAY |
2014-07-02 | GLU | B:211 | B:230 | 65.0 | NA | H | -64.5 | -45.3 | 58.0 | NA | NA |
A:C0KD18:NA |
QEM |
8.522 |
CB |
C21 |
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| GLU | D:211 | D:230 | 64.0 | NA | H | -64.4 | -45.2 | 63.0 | NA | NA |
C:C0KD18:NA |
QEM |
9.572 |
CB |
C21 |
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| 5ewj | 2 | Q13224 | 99.73 | 0.0 |
X-RAY |
2016-03-02 | GLU | B:205 | B:235 | 139.0 | 0.732 | H | -65.9 | -33.5 | 139.0 | 0.732 | 0.0 |
QEL HOH |
8.587 3.386 |
CB CB |
C2 O |
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| GLU | D:205 | D:235 | 72.0 | NA | H | -66.0 | -33.0 | NA | NA | NA | |||||||||||||
| 5ewl | 2 | Q13224 | 99.73 | 0.0 |
X-RAY |
2016-03-02 | GLU | B:205 | B:235 | 149.0 | 0.784 | H | -66.2 | -43.0 | 138.0 | 0.726 | 0.058 |
A:Q91977:0.058 |
5SL HOH |
7.366 2.884 |
CB OE2 |
N6 O |
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| GLU | D:205 | D:235 | 73.0 | NA | H | -65.6 | -43.5 | NA | NA | NA | |||||||||||||
| 5ewm | 2 | Q13224 | 99.73 | 0.0 |
X-RAY |
2016-03-02 | GLU | B:205 | B:235 | 152.0 | 0.8 | H | -67.0 | -33.6 | 149.0 | 0.784 | 0.016 |
A:Q91977:0.016 |
HOH |
3.103 |
N |
O |
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| GLU | D:205 | D:235 | 73.0 | NA | H | -66.7 | -34.3 | NA | NA | NA | |||||||||||||
| 3qel | 2 | Q00960 | 99.45 | 0.0 |
X-RAY |
2011-06-15 | GLU | B:205 | B:235 | 143.0 | 0.753 | H | -64.8 | -33.9 | 143.0 | 0.753 | 0.0 |
QEL HOH |
8.500 4.966 |
CB N |
C2 O |
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| GLU | D:205 | D:235 | 74.0 | NA | H | -60.6 | -35.7 | 74.0 | NA | NA |
QEL HOH |
8.683 9.970 |
CB C |
C2 O |
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| 3qem | 2 | Q00960 | 99.45 | 0.0 |
X-RAY |
2011-06-15 | GLU | B:205 | B:235 | 69.0 | NA | H | -67.3 | -31.4 | 69.0 | NA | NA |
QEM |
8.838 |
C |
C21 |
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| GLU | D:205 | D:235 | 78.0 | NA | H | -62.9 | -28.0 | NA | NA | NA | |||||||||||||
| 5b3j | 2 | Q00960 | 99.45 | 0.0 |
X-RAY |
2016-05-11 | GLU | C:205 | C:235 | 78.0 | NA | H | -75.0 | -45.4 | 78.0 | NA | NA |
HOH |
9.032 |
CB |
O |
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| GLU | E:205 | D:235 | 85.0 | NA | H | -74.4 | -44.1 | NA | NA | NA | |||||||||||||
| 3jpw | 1 | Q00960 | 99.45 | 0.0 |
X-RAY |
2009-12-08 | GLU | A:204 | A:235 | 87.0 | 0.458 | H | -48.7 | -48.8 | 87.0 | 0.458 | 0.0 |
CL HOH |
6.856 2.880 |
OE1 CG |
CL O |
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| 3jpy | 1 | Q00960 | 99.45 | 0.0 |
X-RAY |
2009-12-08 | GLU | A:204 | A:235 | 70.0 | NA | H | -67.4 | -39.1 | 70.0 | NA | NA |
CL HOH |
8.872 7.030 |
CB CB |
CL O |
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| 6e7r | 2 | Q00960 | 99.45 | 0.0 |
X-RAY |
2019-01-30 | GLU | B:204 | B:235 | 141.0 | NA | H | -67.2 | -42.1 | 141.0 | NA | NA |
HYS CL HOH |
8.776 3.089 2.545 |
CB N OE2 |
C16 CL O |
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| GLU | D:204 | D:235 | 144.0 | 0.758 | H | -62.4 | -44.8 | NA | NA | NA | |||||||||||||
| 6e7s | 2 | Q00960 | 99.45 | 0.0 |
X-RAY |
2019-01-30 | GLU | B:204 | B:235 | 145.0 | NA | H | -70.9 | -29.9 | 145.0 | NA | NA |
HZ4 CL HOH |
8.904 3.472 3.814 |
CB N CB |
C20 CL O |
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| GLU | D:204 | D:235 | 148.0 | 0.779 | H | -68.4 | -30.2 | NA | NA | NA | |||||||||||||
| 6e7t | 2 | Q00960 | 99.45 | 0.0 |
X-RAY |
2019-01-30 | GLU | B:204 | B:235 | 141.0 | 0.742 | H | -68.9 | -34.6 | 141.0 | 0.742 | 0.0 |
HYY HOH |
8.912 2.982 |
CB OE1 |
C19 O |
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| GLU | D:204 | D:235 | 147.0 | 0.774 | H | -67.1 | -38.6 | NA | NA | NA | |||||||||||||
| 6e7u | 2 | Q00960 | 99.45 | 0.0 |
X-RAY |
2019-01-30 | GLU | B:204 | B:235 | 71.0 | NA | H | -71.2 | -36.7 | 71.0 | NA | NA |
HX7 CL HOH |
8.881 3.220 4.051 |
CB N CB |
CAJ CL O |
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| GLU | D:204 | D:235 | 147.0 | 0.774 | H | -69.5 | -36.7 | NA | NA | NA | |||||||||||||
| 6e7v | 2 | Q00960 | 99.45 | 0.0 |
X-RAY |
2019-01-30 | GLU | B:204 | B:235 | 69.0 | NA | H | -67.3 | -37.8 | 69.0 | NA | NA |
T88 CL HOH |
8.671 3.539 3.710 |
CB N N |
C20 CL O |
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| GLU | D:204 | D:235 | 140.0 | 0.737 | H | -64.7 | -42.4 | NA | NA | NA | |||||||||||||
| 6e7w | 2 | Q00960 | 99.45 | 0.0 |
X-RAY |
2019-01-30 | GLU | B:204 | B:235 | 123.0 | NA | H | -68.6 | -34.4 | 123.0 | NA | NA |
HXM CL HOH |
8.881 2.926 3.883 |
CB OE2 CB |
C19 CL O |
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| GLU | D:204 | D:235 | 140.0 | 0.737 | H | -59.6 | -46.1 | NA | NA | NA | |||||||||||||
| 6e7x | 2 | Q00960 | 99.45 | 0.0 |
X-RAY |
2019-01-30 | GLU | B:204 | B:235 | 144.0 | NA | H | -68.0 | -36.5 | 139.0 | NA | NA |
A:A0A1L8F5J9:NA |
T97 HOH |
8.932 2.383 |
CB OE1 |
C22 O |
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| GLU | D:204 | D:235 | 144.0 | 0.758 | H | -62.4 | -41.9 | NA | NA | NA | |||||||||||||
| 5tpz | 2 | Q00960 | 99.45 | 0.0 |
X-RAY |
2016-12-14 | GLU | B:204 | D:235 | 150.0 | 0.789 | H | -63.4 | -38.0 | 120.0 | 0.632 | 0.157 |
A:Q91977:0.158 |
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AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-q13224-f1 | 1 | Q13224 | 100.0 | 0.0 | GLU | A:235 | A:235 | 160.0 | 0.842 | H | -65.1 | -51.3 | |