Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr12 13906759 . T A CCDS8662.1:NM_000834.3:c.502Atc>Ttc_NP_000825.2:p.168I>F Homo sapiens glutamate ionotropic receptor NMDA type subunit 2B (GRIN2B), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
7eu8 2 Q13224 100.0 0.0 EM
 2021-07-28 ILE B:168 B:168 19.0 0.109 -71.6 -63.5 19.0 0.109 0.0
ILE D:168 D:168 18.0 0.103 -71.1 -62.7 18.0 0.103 0.0
6wi1 2 ? 99.28 0.0 EM
 2020-07-15 ILE B:199 B:168 1.0 0.006 -78.3 86.2 1.0 0.006 0.0
ILE D:199 D:168 1.0 0.006 -78.2 86.2 1.0 0.006 0.0
5fxg 2 Q00960 98.91 0.0 EM
 2016-05-11 ILE B:143 B:168 66.0 NA S -77.6 156.7 66.0 NA NA
ILE D:143 D:168 67.0 NA S -77.6 156.7 67.0 NA NA
5fxh 2 Q00960 98.91 0.0 EM
 2016-05-11 ILE B:143 B:168 49.0 NA -98.2 129.1 49.0 NA NA
ILE D:143 D:168 49.0 NA -98.2 129.1 49.0 NA NA
5fxi 2 Q00960 98.91 0.0 EM
 2016-05-11 ILE B:143 B:168 32.0 NA -74.2 139.9 32.0 NA NA
ILE D:143 D:168 32.0 NA -74.1 139.9 32.0 NA NA
5fxj 2 Q00960 98.91 0.0 EM
 2016-05-25 ILE B:143 B:168 27.0 NA E -71.6 127.0 27.0 NA NA
ILE D:143 D:168 27.0 NA -71.6 126.9 27.0 NA NA
5fxk 2 Q00960 98.91 0.0 EM
 2016-05-11 ILE B:143 B:168 35.0 NA E -101.1 110.7 35.0 NA NA
ILE D:143 D:168 36.0 NA E -101.1 110.6 36.0 NA NA
6whr 2 Q00960 98.91 0.0 EM
 2020-08-05 ILE B:199 B:168 69.0 0.394 -137.1 138.7 69.0 0.394 0.0
ILE D:199 D:168 68.0 0.389 -137.1 138.7 68.0 0.389 0.0
6whs 2 Q00960 98.91 0.0 EM
 2020-08-05 ILE B:199 B:168 77.0 0.44 E -130.7 134.0 77.0 0.44 0.0
ILE D:199 D:168 76.0 0.434 E -130.7 134.0 76.0 0.434 0.0
6wht 2 Q00960 98.91 0.0 EM
 2020-08-05 ILE B:199 B:168 22.0 0.126 -61.3 -68.8 22.0 0.126 0.0
ILE D:199 D:168 22.0 0.126 -61.3 -68.8 22.0 0.126 0.0
6whu 2 Q00960 98.91 0.0 EM
 2020-08-05 ILE B:199 B:168 47.0 0.269 -169.4 139.7 47.0 0.269 0.0
ILE D:199 D:168 48.0 0.274 -169.4 139.7 48.0 0.274 0.0
6whv 2 Q00960 98.91 0.0 EM
 2020-08-05 ILE B:199 B:168 1.0 0.006 -54.7 150.2 1.0 0.006 0.0
ILE D:199 D:168 0.0 0.0 -51.6 140.3 0.0 0.0 0.0
6whw 2 ? 98.91 0.0 EM
 2020-07-15 ILE B:199 B:168 68.0 0.389 -131.4 97.0 68.0 0.389 0.0
ILE D:199 D:168 68.0 0.389 -131.4 97.1 68.0 0.389 0.0
6whx 2 ? 98.91 0.0 EM
 2020-07-15 ILE B:199 B:168 79.0 0.451 -64.8 159.4 79.0 0.451 0.0
ILE D:199 D:168 0.0 0.0 -43.7 137.8 0.0 0.0 0.0
6why 2 ? 98.91 0.0 EM
 2020-07-15 ILE B:199 B:168 22.0 NA E -111.8 157.6 22.0 NA NA
ILE D:199 D:168 22.0 NA E -111.8 157.6 22.0 NA NA
6wi0 2 Q00960 98.91 0.0 EM
 2020-07-15 ILE B:199 B:168 76.0 0.434 E -138.7 117.1 76.0 0.434 0.0
ILE D:199 D:168 77.0 0.44 E -138.8 117.1 77.0 0.44 0.0
4pe5 2 Q00960 97.82 0.0 X-RAY
 2014-06-04 ILE B:142 B:168 94.0 0.537 E -92.3 118.0 94.0 0.537 0.0
ILE D:142 D:168 96.0 0.549 E -104.1 121.8 96.0 0.549 0.0
6cna 2 Q00960 99.14 0.0 EM
 2018-10-03 ILE B:135 B:168 96.0 0.549 E -101.4 108.1 96.0 0.549 0.0
ILE D:135 D:168 95.0 0.543 E -101.4 108.1 95.0 0.543 0.0
5uow 3 A7XY94 86.86 0.0 EM
 2017-03-22 ILE D:163 D:163 81.0 0.463 E -102.0 126.6 81.0 0.463 0.0
5up2 3 A7XY94 86.86 0.0 EM
 2017-03-22 ILE D:163 D:163 81.0 0.463 E -102.0 126.7 81.0 0.463 0.0
5iou 2 A7XY94 85.78 0.0 EM
 2016-04-20 ILE C:163 B:163 52.0 NA E -91.6 111.5 52.0 NA NA
ILE D:163 D:163 48.0 NA E -84.4 129.0 48.0 NA NA
5iov 2 A7XY94 85.78 0.0 EM
 2016-04-20 ILE C:163 B:163 55.0 NA E -72.5 123.9 55.0 NA NA
ILE D:163 D:163 51.0 NA E -81.9 129.0 51.0 NA NA
5ipq 2 A7XY94 85.78 0.0 EM
 2016-04-20 ILE B:163 B:163 48.0 NA E -102.4 126.8 48.0 NA NA
ILE D:163 D:163 50.0 NA E -102.0 126.7 50.0 NA NA
5ipr 2 A7XY94 85.78 0.0 EM
 2016-04-20 ILE B:163 B:163 49.0 NA E -102.5 126.8 49.0 NA NA
ILE D:163 D:163 49.0 NA E -102.0 126.7 49.0 NA NA
5ips 2 A7XY94 85.78 0.0 EM
 2016-04-20 ILE B:163 B:163 50.0 NA E -102.5 126.9 50.0 NA NA
ILE D:163 D:163 48.0 NA E -102.0 126.8 48.0 NA NA
5ipt 2 A7XY94 85.78 0.0 EM
 2016-04-20 ILE B:163 B:163 62.0 NA -102.5 126.8 62.0 NA NA
ILE D:163 D:163 49.0 NA E -102.0 126.7 49.0 NA NA
5ipu 2 A7XY94 85.78 0.0 EM
 2016-04-20 ILE B:163 B:163 49.0 NA E -102.6 126.8 49.0 NA NA
ILE D:163 D:163 50.0 NA E -102.0 126.7 50.0 NA NA
5ipv 2 A7XY94 85.78 0.0 EM
 2016-04-20 ILE B:163 B:163 49.0 NA E -102.1 126.6 49.0 NA NA
ILE D:163 D:163 48.0 NA E -102.2 126.6 48.0 NA NA
4tll 2 A7XY94 87.47 0.0 X-RAY
 2014-07-02 ILE B:144 B:163 49.0 0.28 E -84.2 121.7 49.0 0.28 0.0
ILE D:144 D:163 78.0 0.446 E -84.1 121.8 78.0 0.446 0.0
4tlm 2 A7XY94 87.47 0.0 X-RAY
 2014-07-02 ILE B:144 B:163 86.0 0.491 E -102.4 126.8 86.0 0.491 0.0
ILE D:144 D:163 83.0 0.474 E -102.1 126.7 83.0 0.474 0.0
5ewj 2 Q13224 99.73 0.0 X-RAY
 2016-03-02 ILE B:138 B:168 80.0 0.457 E -103.0 118.9 80.0 0.457 0.0 HOH
 2.875
 O
 O
ILE D:138 D:168 81.0 0.463 E -103.2 119.2 NA NA NA
5ewl 2 Q13224 99.73 0.0 X-RAY
 2016-03-02 ILE B:138 B:168 80.0 0.457 E -102.0 119.6 80.0 0.457 0.0 HOH
 2.902
 O
 O
ILE D:138 D:168 82.0 0.469 E -101.7 120.5 NA NA NA
5ewm 2 Q13224 99.73 0.0 X-RAY
 2016-03-02 ILE B:138 B:168 80.0 0.457 E -94.0 117.5 80.0 0.457 0.0 HOH
 2.754
 O
 O
ILE D:138 D:168 78.0 0.446 E -94.6 118.1 NA NA NA
3qel 2 Q00960 99.45 0.0 X-RAY
 2011-06-15 ILE B:138 B:168 79.0 0.451 E -103.9 122.1 79.0 0.451 0.0 HOH
 7.174
 CG2
 O
ILE D:138 D:168 76.0 0.434 E -123.4 121.9 76.0 0.434 0.0 HOH
 2.725
 N
 O
3qem 2 Q00960 99.45 0.0 X-RAY
 2011-06-15 ILE B:138 B:168 89.0 0.509 E -115.6 120.1 89.0 0.509 0.0
ILE D:138 D:168 90.0 0.514 E -129.3 119.1 NA NA NA
5b3j 2 Q00960 99.45 0.0 X-RAY
 2016-05-11 ILE C:138 C:168 33.0 NA E -121.8 117.2 33.0 NA NA
ILE E:138 D:168 41.0 NA E -122.1 117.2 NA NA NA
3jpw 1 Q00960 99.45 0.0 X-RAY
 2009-12-08 ILE A:137 A:168 57.0 0.326 E -99.6 120.7 57.0 0.326 0.0
3jpy 1 Q00960 99.45 0.0 X-RAY
 2009-12-08 ILE A:137 A:168 37.0 NA E -102.6 117.7 37.0 NA NA
6e7r 2 Q00960 99.45 0.0 X-RAY
 2019-01-30 ILE B:137 B:168 58.0 0.331 E -121.4 117.5 58.0 0.331 0.0 HOH
 7.174
 CG2
 O
ILE D:137 D:168 79.0 0.451 E -117.9 114.2 NA NA NA
6e7s 2 Q00960 99.45 0.0 X-RAY
 2019-01-30 ILE B:137 B:168 65.0 0.371 E -112.1 121.9 65.0 0.371 0.0 HOH
 7.121
 CG2
 O
ILE D:137 D:168 82.0 0.469 E -119.0 117.7 NA NA NA
6e7t 2 Q00960 99.45 0.0 X-RAY
 2019-01-30 ILE B:137 B:168 77.0 0.44 E -114.0 122.6 77.0 0.44 0.0 HOH
 2.951
 O
 O
ILE D:137 D:168 77.0 0.44 E -115.8 121.2 NA NA NA
6e7u 2 Q00960 99.45 0.0 X-RAY
 2019-01-30 ILE B:137 B:168 64.0 0.366 E -97.8 126.7 64.0 0.366 0.0 HOH
 6.768
 CG2
 O
ILE D:137 D:168 79.0 0.451 E -112.6 119.1 NA NA NA
6e7v 2 Q00960 99.45 0.0 X-RAY
 2019-01-30 ILE B:137 B:168 60.0 0.343 E -108.3 122.7 60.0 0.343 0.0 HOH
 6.390
 N
 O
ILE D:137 D:168 77.0 0.44 E -112.0 121.7 NA NA NA
6e7w 2 Q00960 99.45 0.0 X-RAY
 2019-01-30 ILE B:137 B:168 77.0 0.44 E -123.0 120.1 77.0 0.44 0.0 HOH
 7.957
 CA
 O
ILE D:137 D:168 78.0 0.446 E -122.7 120.9 NA NA NA
6e7x 2 Q00960 99.45 0.0 X-RAY
 2019-01-30 ILE B:137 B:168 62.0 0.354 E -113.9 120.4 62.0 0.354 0.0 HOH
 6.581
 N
 O
ILE D:137 D:168 79.0 0.451 E -114.1 120.1 NA NA NA
5tpz 2 Q00960 99.45 0.0 X-RAY
 2016-12-14 ILE B:137 D:168 36.0 NA E -119.4 113.8 36.0 NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q13224-f1 1 Q13224 100.0 0.0 ILE A:168 A:168 65.0 0.371 E -105.1 116.6