Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr12 14018982 . T A CCDS8662.1:NM_000834.3:c.161cAc>cTc_NP_000825.2:p.54H>L Homo sapiens glutamate ionotropic receptor NMDA type subunit 2B (GRIN2B), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
7eu8 2 Q13224 100.0 0.0 EM
 2021-07-28 HIS B:54 B:54 38.0 NA H -63.8 -42.2 38.0 NA NA
HIS D:54 D:54 69.0 0.354 T -73.6 -15.2 69.0 0.354 0.0
6wi1 2 ? 99.28 0.0 EM
 2020-07-15 HIS B:85 B:54 75.0 NA G -64.7 -14.1 75.0 NA NA
HIS D:85 D:54 78.0 NA G -64.8 -14.1 78.0 NA NA
5fxg 2 Q00960 98.91 0.0 EM
 2016-05-11 HIS B:29 B:54 28.0 NA H -61.8 -26.9 28.0 NA NA
HIS D:29 D:54 27.0 NA H -61.8 -26.8 27.0 NA NA
5fxh 2 Q00960 98.91 0.0 EM
 2016-05-11 HIS B:29 B:54 43.0 NA H -55.8 -41.8 43.0 NA NA
HIS D:29 D:54 44.0 NA H -55.7 -41.8 44.0 NA NA
5fxi 2 Q00960 98.91 0.0 EM
 2016-05-11 HIS B:29 B:54 53.0 NA H -55.2 -42.5 53.0 NA NA
HIS D:29 D:54 54.0 NA H -55.2 -42.5 54.0 NA NA
5fxj 2 Q00960 98.91 0.0 EM
 2016-05-25 HIS B:29 B:54 34.0 NA T -63.2 -60.7 34.0 NA NA
HIS D:29 D:54 34.0 NA T -63.2 -60.7 34.0 NA NA
5fxk 2 Q00960 98.91 0.0 EM
 2016-05-11 HIS B:29 B:54 44.0 NA T -132.1 -67.7 44.0 NA NA
HIS D:29 D:54 45.0 NA T -132.1 -67.7 45.0 NA NA
6whr 2 Q00960 98.91 0.0 EM
 2020-08-05 HIS B:85 B:54 38.0 NA H -68.3 -35.0 38.0 NA NA
HIS D:85 D:54 37.0 NA H -68.4 -35.0 37.0 NA NA
6whs 2 Q00960 98.91 0.0 EM
 2020-08-05 HIS B:85 B:54 43.0 NA T -52.8 -39.4 43.0 NA NA
HIS D:85 D:54 41.0 NA T -52.8 -39.4 41.0 NA NA
6wht 2 Q00960 98.91 0.0 EM
 2020-08-05 HIS B:85 B:54 58.0 0.297 H -60.6 -30.2 58.0 0.297 0.0
HIS D:85 D:54 56.0 0.287 H -60.6 -30.1 56.0 0.287 0.0
6whu 2 Q00960 98.91 0.0 EM
 2020-08-05 HIS B:85 B:54 157.0 0.805 T -64.7 -9.9 157.0 0.805 0.0
HIS D:85 D:54 158.0 0.81 T -64.6 -9.8 158.0 0.81 0.0
6whv 2 Q00960 98.91 0.0 EM
 2020-08-05 HIS B:85 B:54 96.0 NA -72.9 94.7 96.0 NA NA
HIS D:85 D:54 49.0 NA H -61.2 -29.5 49.0 NA NA
6whw 2 ? 98.91 0.0 EM
 2020-07-15 HIS B:85 B:54 128.0 0.656 G -85.1 19.7 128.0 0.656 0.0
HIS D:85 D:54 125.0 0.641 G -85.1 19.7 125.0 0.641 0.0
6whx 2 ? 98.91 0.0 EM
 2020-07-15 HIS B:85 B:54 31.0 NA S -81.0 -64.0 31.0 NA NA
HIS D:85 D:54 93.0 NA T -118.5 19.3 93.0 NA NA
6why 2 ? 98.91 0.0 EM
 2020-07-15 HIS B:85 B:54 40.0 NA H -59.1 -41.6 40.0 NA NA
HIS D:85 D:54 38.0 NA H -59.2 -41.6 38.0 NA NA
6wi0 2 Q00960 98.91 0.0 EM
 2020-07-15 HIS B:85 B:54 50.0 NA G -87.1 21.7 50.0 NA NA
HIS D:85 D:54 51.0 NA G -87.1 21.7 51.0 NA NA
4pe5 2 Q00960 97.82 0.0 X-RAY
 2014-06-04 HIS B:28 B:54 16.0 NA T -125.7 -6.5 16.0 NA NA
HIS D:28 D:54 26.0 NA H -130.6 -25.4 26.0 NA NA
6cna 2 Q00960 99.14 0.0 EM
 2018-10-03 HIS B:21 B:54 18.0 NA H -65.2 -46.1 18.0 NA NA
HIS D:21 D:54 18.0 NA H -65.2 -46.1 18.0 NA NA
5uow 3 A7XY94 86.86 0.0 EM
 2017-03-22 HIS D:49 D:49 16.0 NA H -63.0 -41.7 16.0 NA NA
5up2 3 A7XY94 86.86 0.0 EM
 2017-03-22 HIS D:49 D:49 16.0 NA H -63.0 -41.7 16.0 NA NA
5iou 2 A7XY94 85.78 0.0 EM
 2016-04-20 HIS C:49 B:49 109.0 NA -108.0 17.4 109.0 NA NA
HIS D:49 D:49 108.0 NA -107.8 19.0 108.0 NA NA
5iov 2 A7XY94 85.78 0.0 EM
 2016-04-20 HIS C:49 B:49 105.0 NA -107.6 20.1 105.0 NA NA
HIS D:49 D:49 108.0 NA -108.3 19.5 108.0 NA NA
5ipq 2 A7XY94 85.78 0.0 EM
 2016-04-20 HIS B:49 B:49 62.0 NA S -109.3 -162.1 62.0 NA NA
HIS D:49 D:49 27.0 NA H -58.2 -60.0 27.0 NA NA
5ipr 2 A7XY94 85.78 0.0 EM
 2016-04-20 HIS B:49 B:49 60.0 NA S -109.2 -162.1 60.0 NA NA
HIS D:49 D:49 28.0 NA H -58.2 -60.0 28.0 NA NA
5ips 2 A7XY94 85.78 0.0 EM
 2016-04-20 HIS B:49 B:49 59.0 NA S -109.2 -162.1 59.0 NA NA
HIS D:49 D:49 27.0 NA H -58.2 -60.0 27.0 NA NA
5ipt 2 A7XY94 85.78 0.0 EM
 2016-04-20 HIS B:49 B:49 62.0 NA S -109.3 -162.2 62.0 NA NA
HIS D:49 D:49 28.0 NA H -58.2 -60.1 28.0 NA NA
5ipu 2 A7XY94 85.78 0.0 EM
 2016-04-20 HIS B:49 B:49 60.0 NA S -109.3 -162.1 60.0 NA NA
HIS D:49 D:49 28.0 NA H -58.2 -60.0 28.0 NA NA
5ipv 2 A7XY94 85.78 0.0 EM
 2016-04-20 HIS B:49 B:49 28.0 NA H -58.2 -60.0 28.0 NA NA
HIS D:49 D:49 27.0 NA H -58.2 -59.9 27.0 NA NA
4tll 2 A7XY94 87.47 0.0 X-RAY
 2014-07-02 HIS B:30 B:49 48.0 NA 53.9 -143.9 48.0 NA NA
HIS D:30 NA:NA DO NA DO DO DO NA NA NA
4tlm 2 A7XY94 87.47 0.0 X-RAY
 2014-07-02 HIS B:30 B:49 59.0 0.303 S -109.3 -162.1 59.0 0.303 0.0
HIS D:30 D:49 17.0 NA H -58.2 -60.0 17.0 NA NA
5ewj 2 Q13224 99.73 0.0 X-RAY
 2016-03-02 HIS B:24 NA:NA DO NA DO DO DO NA NA NA
HIS D:24 NA:NA DO NA DO DO DO NA NA NA
5ewl 2 Q13224 99.73 0.0 X-RAY
 2016-03-02 HIS B:24 NA:NA DO NA DO DO DO NA NA NA
HIS D:24 NA:NA DO NA DO DO DO NA NA NA
5ewm 2 Q13224 99.73 0.0 X-RAY
 2016-03-02 HIS B:24 NA:NA DO NA DO DO DO NA NA NA
HIS D:24 NA:NA DO NA DO DO DO NA NA NA
3qel 2 Q00960 99.45 0.0 X-RAY
 2011-06-15 HIS B:24 NA:NA DO NA DO DO DO NA NA NA
HIS D:24 NA:NA DO NA DO DO DO NA NA NA
3qem 2 Q00960 99.45 0.0 X-RAY
 2011-06-15 HIS B:24 NA:NA DO NA DO DO DO NA NA NA
HIS D:24 NA:NA DO NA DO DO DO NA NA NA
5b3j 2 Q00960 99.45 0.0 X-RAY
 2016-05-11 HIS C:24 C:54 19.0 0.097 H -77.6 -33.6 19.0 0.097 0.0 HOH
 9.842
 CE1
 O
HIS E:24 D:54 21.0 0.108 H -77.0 -35.5 NA NA NA
3jpw 1 Q00960 99.45 0.0 X-RAY
 2009-12-08 HIS A:23 A:54 170.0 0.872 G -54.4 -17.3 170.0 0.872 0.0
3jpy 1 Q00960 99.45 0.0 X-RAY
 2009-12-08 HIS A:23 A:54 157.0 0.805 S -87.2 -81.0 157.0 0.805 0.0
6e7r 2 Q00960 99.45 0.0 X-RAY
 2019-01-30 HIS B:23 B:54 36.0 0.185 T -94.4 16.6 36.0 0.185 0.0
HIS D:23 D:54 84.0 0.431 -96.8 360.0 NA NA NA
6e7s 2 Q00960 99.45 0.0 X-RAY
 2019-01-30 HIS B:23 B:54 27.0 0.138 T -83.3 20.0 27.0 0.138 0.0
HIS D:23 D:54 33.0 0.169 H -65.2 -13.1 NA NA NA
6e7t 2 Q00960 99.45 0.0 X-RAY
 2019-01-30 HIS B:23 B:54 104.0 0.533 -91.1 360.0 104.0 0.533 0.0
HIS D:23 NA:NA DO NA DO DO DO NA NA NA
6e7u 2 Q00960 99.45 0.0 X-RAY
 2019-01-30 HIS B:23 B:54 71.0 0.364 -98.2 360.0 71.0 0.364 0.0
HIS D:23 D:54 53.0 0.272 H -97.8 -19.4 NA NA NA
6e7v 2 Q00960 99.45 0.0 X-RAY
 2019-01-30 HIS B:23 B:54 54.0 0.277 -105.5 360.0 54.0 0.277 0.0
HIS D:23 D:54 105.0 0.538 -109.8 360.0 NA NA NA
6e7w 2 Q00960 99.45 0.0 X-RAY
 2019-01-30 HIS B:23 B:54 85.0 NA -119.3 360.0 85.0 NA NA
HIS D:23 D:54 30.0 NA S -101.1 4.0 NA NA NA
6e7x 2 Q00960 99.45 0.0 X-RAY
 2019-01-30 HIS B:23 B:54 34.0 0.174 T -96.8 12.8 34.0 0.174 0.0
HIS D:23 D:54 26.0 0.133 H -95.6 -11.5 NA NA NA
5tpz 2 Q00960 99.45 0.0 X-RAY
 2016-12-14 HIS B:23 NA:NA DO NA DO DO DO NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q13224-f1 1 Q13224 100.0 0.0 HIS A:54 A:54 55.0 0.282 -120.1 62.8