Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr12 | 79837859 | . | A | C | CCDS9017.1:NM_001135805.1:c.935tAt>tCt_NP_001129277.1:p.312Y>S | Homo sapiens synaptotagmin 1 (SYT1), transcript variant 1, mRNA. |
|---|---|---|---|---|---|---|---|
|
|
|
|
|
PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 5w5c | 6 | P21707 | 100.0 | 0.0 |
X-RAY |
2017-08-23 | TYR | F:172 | F:311 | 7.0 | 0.03 | E | -148.4 | 171.1 | 7.0 | 0.03 | 0.0 |
GOL HOH |
8.546 2.486 |
CD2 OH |
C3 O |
||
| 5ccg | 5 | P21707 | 100.0 | 0.0 |
X-RAY |
2015-08-12 | TYR | E:171 | E:311 | 13.0 | 0.057 | E | -151.1 | 158.2 | 13.0 | 0.057 | 0.0 |
CA CA |
8.604 9.905 |
CE1 CE1 |
CA CA |
||
| TYR | F:171 | F:311 | 22.0 | 0.096 | E | -151.5 | 159.9 | 22.0 | 0.096 | 0.0 |
CA |
8.472 |
CE1 |
CA |
|||||||||
| TYR | K:171 | K:311 | 9.0 | 0.039 | E | -152.4 | 159.6 | NA | NA | NA | |||||||||||||
| 5cch | 5 | P21707 | 100.0 | 0.0 |
X-RAY |
2015-08-12 | TYR | E:171 | E:311 | 33.0 | 0.143 | E | -136.0 | 146.9 | 33.0 | 0.143 | 0.0 |
CA |
9.140 |
CD1 |
CA |
||
| TYR | F:171 | F:311 | 37.0 | 0.161 | E | -139.3 | 165.3 | 37.0 | 0.161 | 0.0 |
CA CA |
7.659 8.706 |
CD1 CE1 |
CA CA |
|||||||||
| 5cci | 5 | P21707 | 100.0 | 0.0 |
X-RAY |
2015-08-12 | TYR | E:171 | E:311 | 22.0 | 0.096 | E | -152.0 | 147.3 | 22.0 | 0.096 | 0.0 |
MG |
8.396 |
CD1 |
MG |
||
| TYR | F:171 | F:311 | 33.0 | 0.143 | E | -155.0 | 146.3 | 33.0 | 0.143 | 0.0 |
MG |
8.769 |
CE1 |
MG |
|||||||||
| 6mti | 2 | P21707 | 100.0 | 0.0 |
EM |
2019-04-24 | TYR | B:171 | 2:592 | 22.0 | 0.096 | E | -151.9 | 147.3 | 22.0 | 0.096 | 0.0 |
MG |
8.398 |
CD1 |
MG |
||
| TYR | C:171 | 3:592 | 22.0 | 0.096 | E | -151.9 | 147.3 | 22.0 | 0.096 | 0.0 |
MG |
8.397 |
CD1 |
MG |
|||||||||
| TYR | D:171 | 4:592 | 21.0 | 0.091 | E | -152.0 | 147.2 | 21.0 | 0.091 | 0.0 |
MG |
8.396 |
CD1 |
MG |
|||||||||
| TYR | E:171 | 5:592 | 22.0 | 0.096 | E | -152.0 | 147.3 | 22.0 | 0.096 | 0.0 |
MG |
8.396 |
CD1 |
MG |
|||||||||
| 2r83 | 1 | P21579 | 99.65 | 0.0 |
X-RAY |
2008-02-12 | TYR | A:174 | A:311 | 15.0 | 0.065 | E | -145.6 | 155.7 | 15.0 | 0.065 | 0.0 |
HOH |
7.166 |
OH |
O |
||
| TYR | B:174 | B:311 | 15.0 | 0.065 | E | -145.1 | 154.8 | 15.0 | 0.065 | 0.0 |
HOH |
8.554 |
CE1 |
O |
|||||||||
| 5kj7 | 5 | P21707 | 100.0 | 0.0 |
X-RAY |
2016-10-19 | TYR | E:171 | E:311 | 14.0 | 0.061 | E | -153.2 | 158.8 | 14.0 | 0.061 | 0.0 |
CA |
8.834 |
CE1 |
CA |
||
| TYR | F:171 | F:311 | 27.0 | 0.117 | E | -152.7 | 160.2 | NA | NA | NA | |||||||||||||
| TYR | K:171 | K:311 | 8.0 | 0.035 | E | -155.6 | 161.0 | NA | NA | NA | |||||||||||||
| 5kj8 | 5 | P21707 | 100.0 | 0.0 |
X-RAY |
2016-10-19 | TYR | E:171 | E:311 | 14.0 | 0.061 | E | -146.3 | 159.5 | 14.0 | 0.061 | 0.0 |
CA CA |
7.969 9.537 |
CD1 CE1 |
CA CA |
||
| TYR | F:171 | F:311 | 25.0 | 0.109 | E | -146.4 | 160.5 | NA | NA | NA | |||||||||||||
| TYR | K:171 | K:311 | 9.0 | 0.039 | E | -147.2 | 162.1 | NA | NA | NA | |||||||||||||
| 2lha | 1 | P21579 | 100.0 | 4e-96 |
NMR |
2012-05-02 | TYR | A:42 | A:311 | 40.0 | 0.174 | E | -162.1 | 122.4 | 40.0 | 0.174 | 0.0 |
IHP |
2.197 |
HH |
O35 |
||
| 5w5d | 6 | P21707 | 100.0 | 4e-96 |
X-RAY |
2017-08-23 | TYR | F:42 | F:311 | 11.0 | 0.048 | E | -141.9 | 173.7 | 11.0 | 0.048 | 0.0 |
HOH |
2.558 |
OH |
O |
||
| 5t0s | 1 | P46096 | 100.0 | 2e-95 |
X-RAY |
2017-06-14 | TYR | A:41 | A:311 | 17.0 | 0.074 | E | -134.6 | 165.1 | 17.0 | 0.074 | 0.0 |
CD HOH |
8.281 3.394 |
CE1 OH |
CD O |
||
| 2yoa | 1 | P21707 | 100.0 | 3e-95 |
X-RAY |
2013-03-20 | TYR | A:42 | A:311 | 17.0 | 0.074 | E | -135.8 | 166.8 | 17.0 | 0.074 | 0.0 |
CA CA CA SEP CA SCN HOH |
8.248 9.544 9.535 9.776 8.782 3.494 4.859 |
CE1 CE1 OH CE1 CD1 CZ OH |
CA CA CA O CA S O |
||
| TYR | B:42 | B:311 | 15.0 | 0.065 | E | -135.1 | 168.7 | NA | NA | NA | |||||||||||||
| 6tz3 | 1 | P21579 | 100.0 | 3e-95 |
X-RAY |
2020-05-13 | TYR | A:47 | A:312 | 14.0 | 0.061 | E | -140.9 | 168.0 | 14.0 | 0.061 | 0.0 |
SO4 SO4 HOH |
2.097 6.467 3.736 |
HH HH HH |
O2 O1 O |
||
| 1tjm | 1 | P21707 | 100.0 | 4e-95 |
X-RAY |
2004-09-28 | TYR | A:49 | A:311 | 17.0 | 0.074 | E | -139.0 | 168.1 | 17.0 | 0.074 | 0.0 |
SR HOH |
7.303 3.733 |
HE1 OH |
SR H2 |
||
| 1tjx | 1 | P21707 | 100.0 | 4e-95 |
X-RAY |
2004-11-23 | TYR | A:49 | A:311 | 16.0 | 0.07 | E | -137.5 | 167.4 | 16.0 | 0.07 | 0.0 |
CA CA ACT HOH |
8.931 7.562 7.174 2.193 |
HE1 HD1 HE2 HE2 |
CA CA O H1 |
||
| 1uov | 1 | P21707 | 100.0 | 4e-95 |
X-RAY |
2004-09-09 | TYR | A:49 | A:311 | 21.0 | 0.091 | E | -138.7 | 168.8 | 21.0 | 0.091 | 0.0 |
CA CA HOH |
9.737 8.228 3.106 |
CE2 CE2 OH |
CA CA O |
||
| 1uow | 1 | P21707 | 100.0 | 4e-95 |
X-RAY |
2004-09-16 | TYR | A:49 | A:311 | 16.0 | 0.07 | E | -137.5 | 167.5 | 16.0 | 0.07 | 0.0 |
CA CA ACT HOH |
9.792 8.323 7.550 2.707 |
CE1 CD1 OH OH |
CA CA O O |
||
| 4v11 | 1 | P21579 | 100.0 | 2e-94 |
X-RAY |
2015-02-25 | TYR | A:40 | A:312 | 30.0 | 0.13 | E | -128.4 | 163.8 | 30.0 | 0.13 | 0.0 |
CA CA HOH |
8.170 9.528 2.612 |
CE1 CE1 OH |
CA CA O |
||
| 6u4w | 1 | P21579 | 99.34 | 2e-94 |
X-RAY |
2020-05-13 | TYR | A:47 | A:312 | 8.0 | 0.035 | E | -143.0 | 168.0 | 8.0 | 0.035 | 0.0 |
SO4 SO4 HOH |
6.522 1.765 4.480 |
HH HH HB2 |
O2 O2 O |
||
| 6u4u | 1 | P21579 | 99.34 | 2e-94 |
X-RAY |
2020-05-13 | TYR | A:47 | A:312 | 30.0 | 0.13 | E | -141.2 | 167.6 | 30.0 | 0.13 | 0.0 |
SO4 SO4 HOH |
2.011 6.825 3.756 |
HH HH CE2 |
O1 O2 O |
||
| 6u41 | 1 | P21579 | 99.34 | 3e-94 |
X-RAY |
2020-05-13 | TYR | A:47 | A:312 | 7.0 | 0.03 | E | -137.2 | 169.2 | 7.0 | 0.03 | 0.0 |
SO4 SO4 HOH |
2.054 6.413 3.781 |
HH HH CE2 |
O1 O2 O |
||
| 5vff | 1 | P46096 | 99.34 | 5e-94 |
X-RAY |
2018-04-11 | TYR | A:41 | A:311 | 16.0 | 0.07 | E | -134.1 | 165.5 | 16.0 | 0.07 | 0.0 |
PB HOH |
8.521 2.585 |
CE1 OH |
PB O |
||
| 5vfg | 1 | P46096 | 99.34 | 5e-94 |
X-RAY |
2018-04-11 | TYR | A:41 | A:311 | 18.0 | 0.078 | E | -134.4 | 169.9 | 18.0 | 0.078 | 0.0 |
PB HOH |
8.399 2.471 |
CE1 OH |
PB O |
||
| 2n1t | 5 | P21579 | 100.0 | 3e-93 |
NMR |
2015-06-03 | TYR | E:49 | E:311 | 25.0 | 0.109 | E | -146.4 | 157.6 | 15.0 | 0.065 | 0.044 |
B:P32851:0.043 |
|||||
| 5ccj | 1 | P21707 | 96.69 | 7e-91 |
X-RAY |
2015-08-12 | TYR | A:42 | A:311 | 21.0 | 0.091 | E | -141.2 | 165.9 | 21.0 | 0.091 | 0.0 |
GOL SO4 SO4 HOH |
3.512 7.300 2.550 4.452 |
CZ OH OH OH |
C1 O4 O1 O |
||
| TYR | B:42 | B:311 | 18.0 | 0.078 | E | -133.7 | 163.5 | NA | NA | NA | |||||||||||||
| TYR | C:42 | C:311 | 22.0 | 0.096 | E | -139.0 | 167.1 | NA | NA | NA | |||||||||||||
| TYR | D:42 | D:311 | 14.0 | 0.061 | E | -137.7 | 167.4 | NA | NA | NA | |||||||||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p21579-f1 | 1 | P21579 | 100.0 | 0.0 | TYR | A:312 | A:312 | 13.0 | 0.057 | E | -147.4 | 157.0 | |