Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr12 96255028 . A C CCDS9055.1:NM_003095.2:c.86tAc>tCc_NP_003086.1:p.29Y>S Homo sapiens small nuclear ribonucleoprotein polypeptide F (SNRPF), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4f7u 4 P62321 100.0 1e-58 X-RAY
 2013-01-30 TYR G:29 F:4029 33.0 0.143 E -128.6 126.2 2.0 0.009 0.134 B:P62317:0.135
 HOH
 2.620
 OH
 O
TYR H:29 I:4029 32.0 0.139 E -117.6 126.3 NA NA NA
4v98 4 P62306 100.0 1e-58 X-RAY
 2014-07-09 TYR D:29 AL:4023 32.0 0.139 E -121.3 123.4 4.0 0.017 0.122 B:P62316:0.122
TYR L:29 AD:4023 32.0 0.139 E -121.4 123.7 NA NA NA
TYR T:29 AT:4023 30.0 0.13 E -121.4 123.2 NA NA NA
TYR BA:29 Ab:4023 30.0 0.13 E -121.2 123.2 NA NA NA
TYR JA:29 Aj:4023 32.0 0.139 E -121.2 123.8 NA NA NA
TYR RA:29 Ar:4023 30.0 0.13 E -121.4 123.6 NA NA NA
TYR DB:29 Az:4023 31.0 0.135 E -121.1 123.3 NA NA NA
TYR HB:29 BD:4023 30.0 0.13 E -121.4 123.8 NA NA NA
TYR PB:29 BL:4023 30.0 0.13 E -121.5 123.5 NA NA NA
TYR XB:29 BT:4023 30.0 0.13 E -121.2 123.7 NA NA NA
TYR FC:29 Bb:4023 32.0 0.139 E -121.4 123.5 NA NA NA
TYR NC:29 Bj:4023 33.0 0.143 E -121.5 123.4 NA NA NA
TYR VC:29 Br:4023 31.0 0.135 E -121.1 123.0 NA NA NA
TYR HD:29 Bz:4023 32.0 0.139 E -121.1 123.1 NA NA NA
TYR LD:29 CD:4023 32.0 0.139 E -120.8 123.0 NA NA NA
TYR TD:29 CL:4023 32.0 0.139 E -121.1 123.8 NA NA NA
TYR BE:29 CT:4023 31.0 0.135 E -121.2 123.6 NA NA NA
TYR JE:29 Cb:4023 31.0 0.135 E -120.7 123.3 NA NA NA
TYR RE:29 Cj:4023 31.0 0.135 E -121.0 123.5 NA NA NA
TYR ZE:29 Cr:4023 30.0 0.13 E -121.2 123.5 NA NA NA
4wzj 5 P62306 100.0 1e-58 X-RAY
 2015-01-14 TYR E:29 F:29 36.0 0.157 E -131.1 110.7 3.0 0.013 0.144 D:P62316:0.143
TYR L:29 M:29 36.0 0.157 E -130.7 111.1 NA NA NA
TYR S:29 T:29 37.0 0.161 E -131.1 110.2 NA NA NA
TYR Z:29 FF:29 37.0 0.161 E -130.1 110.7 NA NA NA
TYR GA:29 MM:29 35.0 0.152 E -132.3 111.0 NA NA NA
TYR NA:29 TT:29 35.0 0.152 E -130.1 110.2 NA NA NA
TYR UA:29 FFF:29 35.0 0.152 E -131.2 110.2 NA NA NA
TYR BB:29 MMM:29 34.0 0.148 E -129.9 111.1 NA NA NA
TYR IB:29 TTT:29 36.0 0.157 E -130.5 110.1 NA NA NA
TYR PB:29 FFFF:29 36.0 0.157 E -131.3 110.9 NA NA NA
TYR WB:29 MMMM:29 36.0 0.157 E -131.9 110.3 NA NA NA
TYR DC:29 TTTT:29 35.0 0.152 E -130.3 109.0 NA NA NA
5mqf 23 P62306 100.0 1e-58 EM
 2017-03-22 TYR Z:29 b:29 41.0 NA E -128.1 124.8 41.0 NA NA
TYR GA:29 i:29 48.0 NA E -131.1 110.2 48.0 NA NA
5o9z 20 P62306 100.0 1e-58 EM
 2017-08-16 TYR T:29 b:29 46.0 NA E -126.2 123.2 46.0 NA NA
TYR AA:29 i:29 44.0 NA E -127.4 118.7 44.0 NA NA
TYR UA:29 T:29 NA NA NA NA NA NA NA NA
5xjc 31 P62306 100.0 1e-58 EM
 2017-07-05 TYR EA:29 f:29 36.0 0.157 E -131.1 110.7 2.0 0.009 0.148 DA:P62316:0.148
TYR LA:29 m:29 36.0 0.157 E -131.1 110.8 3.0 0.013 0.144 KA:P62316:0.143
5xjl 5 P62306 100.0 1e-58 X-RAY
 2018-05-02 TYR E:29 F:29 33.0 0.143 E -128.5 122.6 1.0 0.004 0.139 C:P62316:0.139
5xjq 5 P62306 100.0 1e-58 X-RAY
 2018-07-04 TYR E:29 F:29 35.0 0.152 E -137.2 113.3 2.0 0.009 0.143 C:P62316:0.143
5xjr 5 P62306 100.0 1e-58 X-RAY
 2018-07-04 TYR E:29 F:29 37.0 0.161 E -124.5 139.0 4.0 0.017 0.144 C:P62316:0.143
5xjs 5 P62306 100.0 1e-58 X-RAY
 2018-07-04 TYR E:29 F:29 35.0 0.152 E -136.2 122.7 1.0 0.004 0.148 C:P62316:0.148
5xjt 5 P62306 100.0 1e-58 X-RAY
 2018-07-04 TYR E:29 F:29 37.0 0.161 E -135.7 118.0 2.0 0.009 0.152 C:P62316:0.152
5xju 5 P62306 100.0 1e-58 X-RAY
 2018-07-04 TYR E:29 F:29 36.0 0.157 E -136.6 131.6 1.0 0.004 0.153 C:P62316:0.152
5yzg 37 P62306 100.0 1e-58 EM
 2018-08-08 TYR NA:29 m:29 36.0 0.157 E -131.1 110.8 3.0 0.013 0.144 MA:P62316:0.143
TYR WA:29 f:29 36.0 0.157 E -131.1 110.7 2.0 0.009 0.148 VA:P62316:0.148
5z56 10 P62306 100.0 1e-58 EM
 2018-09-19 TYR J:29 f:29 47.0 NA E -131.1 110.7 47.0 NA NA
TYR T:29 m:29 47.0 NA E -131.1 110.9 47.0 NA NA
5z57 10 P62306 100.0 1e-58 EM
 2018-09-19 TYR J:29 f:29 47.0 NA E -131.1 110.7 47.0 NA NA
TYR T:29 m:29 47.0 NA E -131.1 110.9 47.0 NA NA
5z58 10 P62306 100.0 1e-58 EM
 2018-09-19 TYR J:29 f:29 47.0 NA E -131.1 110.7 47.0 NA NA
TYR T:29 m:29 47.0 NA E -131.1 110.9 47.0 NA NA
6ah0 5 P62306 100.0 1e-58 EM
 2018-11-14 TYR E:29 b:29 40.0 NA E -126.2 123.1 40.0 NA NA
TYR AA:29 m:29 41.0 NA E -131.1 111.0 41.0 NA NA
TYR WA:29 Q:29 39.0 NA E -127.5 118.7 39.0 NA NA
6ahd 16 ? 100.0 1e-58 EM
 2018-11-14 TYR P:29 d:29 40.0 NA E -131.1 110.7 40.0 NA NA A
 9.825
 N
 C2
TYR GA:29 l:29 41.0 NA E -131.1 110.9 41.0 NA NA
TYR WA:29 Q:29 40.0 NA E -127.4 118.7 40.0 NA NA
6ff7 40 P62306 100.0 1e-58 EM
 2019-03-13 TYR QA:29 b:29 48.0 NA E -130.1 121.8 48.0 NA NA
TYR XA:29 i:29 46.0 NA E -131.1 110.3 46.0 NA NA
6icz 33 P62306 100.0 1e-58 EM
 2019-03-13 TYR GA:29 m:29 46.0 NA E -131.1 110.7 46.0 NA NA
TYR QA:29 f:29 48.0 NA E -131.3 110.7 48.0 NA NA
6id0 24 P62306 100.0 1e-58 EM
 2019-03-13 TYR X:29 f:29 48.0 NA E -131.2 110.7 48.0 NA NA
TYR JA:29 m:29 47.0 NA E -131.1 110.7 47.0 NA NA
6id1 23 P62306 100.0 1e-58 EM
 2019-03-13 TYR W:29 f:29 47.0 NA E -131.2 110.6 47.0 NA NA
TYR LA:29 m:29 46.0 NA E -131.2 110.8 46.0 NA NA
6qw6 12 P62306 100.0 1e-58 EM
 2019-04-17 TYR L:29 4f:29 26.0 0.113 E -136.1 119.6 0.0 0.0 0.113 D:P62316:0.109
LA:O43290:0.043
 G
 9.334
 N
 OP2
TYR AA:29 5f:29 30.0 0.13 E -123.5 131.9 2.0 0.009 0.121 P:P62316:0.122
6qx9 13 P62306 100.0 1e-58 EM
 2019-04-17 TYR M:29 1f:29 33.0 0.143 E -130.7 127.8 0.0 0.0 0.143 CB:P62316:0.139
I:P08621:0.048
TYR Y:29 2f:29 26.0 0.113 E -141.7 115.3 0.0 0.0 0.113 Q:P62316:0.113
TYR HA:29 5f:29 30.0 0.13 E -123.5 131.9 2.0 0.009 0.121 BB:P62316:0.122
TYR OA:29 4f:29 26.0 0.113 E -136.0 119.6 0.0 0.0 0.113 GA:O43290:0.043
CA:P62316:0.109
 G
 9.335
 N
 OP2
6v4x 3 P62306 100.0 1e-58 EM
 2020-02-19 TYR C:29 F:29 27.0 0.117 E -132.3 109.0 0.0 0.0 0.117 G:P83369:0.117
6y53 15 P62306 100.0 1e-58 EM
 2020-06-17 TYR O:29 i:29 40.0 NA E -120.8 121.2 40.0 NA NA
6y5q 20 P62306 100.0 1e-58 EM
 2020-06-17 TYR T:29 i:29 40.0 NA E -120.8 121.2 40.0 NA NA
7a5p 26 P62306 100.0 1e-58 EM
 2020-10-14 TYR CA:29 f:29 48.0 NA E -132.9 113.1 48.0 NA NA
TYR FA:29 i:29 47.0 NA E -132.7 112.8 47.0 NA NA
7abg 44 P62306 100.0 1e-58 EM
 2020-12-23 TYR RA:29 i:29 36.0 NA E -141.7 115.3 36.0 NA NA
TYR CB:29 b:29 45.0 NA E -128.2 118.5 45.0 NA NA
7abi 3 P62306 100.0 1e-58 EM
 2021-02-10 TYR C:29 b:29 42.0 NA E -126.6 118.3 42.0 NA NA
TYR HA:29 i:29 36.0 NA E -141.7 115.3 36.0 NA NA
7b0y 20 P62306 100.0 1e-58 EM
 2021-01-13 TYR T:29 f:29 30.0 0.13 E -143.0 123.9 0.0 0.0 0.13 S:P62316:0.117
Q:P08621:0.052
7dvq 10 P62306 100.0 1e-58 EM
 2021-03-31 TYR J:29 f:29 46.0 NA E -131.2 110.7 46.0 NA NA
TYR T:29 m:29 47.0 NA E -131.1 110.9 47.0 NA NA
4pjo 6 P62306 100.0 1e-50 X-RAY
 2014-12-31 TYR F:29 F:29 34.0 0.148 E -123.3 129.5 0.0 0.0 0.148 D:P62316:0.135
H:P08621:0.052
TYR Q:29 f:29 34.0 0.148 E -125.8 127.9 NA NA NA
TYR BA:29 T:29 34.0 0.148 E -127.3 127.9 NA NA NA
TYR MA:29 t:29 34.0 0.148 E -130.7 127.8 NA NA NA
6qdv 35 P62306 100.0 2e-48 EM
 2019-02-20 TYR IA:26 f:29 40.0 0.174 E -129.6 114.7 8.0 0.035 0.139 MA:P62316:0.139
TYR TA:26 q:29 27.0 0.117 E -141.7 115.4 0.0 0.0 0.117 PA:P62316:0.117

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p62306-f1 1 P62306 100.0 5e-59 TYR A:29 A:29 29.0 0.126 E -120.1 120.7