Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr12 10762434 . C A CCDS8628.1:NM_018048.3:c.260cGa>cTa_NP_060518.1:p.87R>L Homo sapiens mago homolog B, exon junction complex core component (MAGOHB), transcript variant 1, mRNA.
pdb_id: 
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auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5xjc 38 Q96A72 100.0 3e-108 EM
 2017-07-05 ARG VA:87 v:87 91.0 0.404 E -147.0 146.5 91.0 0.404 0.0
5yzg 30 Q96A72 100.0 3e-108 EM
 2018-08-08 ARG GA:87 v:87 92.0 0.409 E -147.0 146.5 92.0 0.409 0.0
6icz 1 Q96A72 100.0 3e-108 EM
 2019-03-13 ARG A:87 v:85 40.0 NA E -147.0 146.5 40.0 NA NA
2hyi 2 P61326 98.63 4e-105 X-RAY
 2006-08-15 ARG C:85 A:85 93.0 0.413 E -147.0 146.4 93.0 0.413 0.0 HOH
 3.271
 CD
 O
ARG G:85 G:85 90.0 0.4 E -139.9 149.9 NA NA NA
2j0q 2 P61326 98.63 4e-105 X-RAY
 2006-08-30 ARG C:85 C:85 86.0 0.382 E -120.6 157.0 86.0 0.382 0.0
ARG F:85 F:85 85.0 0.378 E -119.8 155.4 NA NA NA
2j0s 2 P61326 98.63 4e-105 X-RAY
 2006-09-06 ARG B:85 C:85 109.0 0.484 E -145.1 141.7 109.0 0.484 0.0 HOH
 3.623
 CB
 O
2xb2 2 P61326 98.63 4e-105 X-RAY
 2010-05-12 ARG B:85 C:85 114.0 0.507 E -134.5 138.6 NA NA NA
ARG L:85 Y:85 116.0 0.516 E -134.8 138.5 116.0 0.516 0.0
3ex7 1 P61326 98.63 4e-105 X-RAY
 2008-12-09 ARG A:85 A:85 84.0 0.373 E -146.2 141.9 84.0 0.373 0.0 HOH
 2.653
 NH1
 O
ARG E:85 E:85 100.0 0.444 E -142.1 139.4 NA NA NA
7a5p 34 P61326 98.63 4e-105 EM
 2020-10-14 ARG RA:85 v:87 43.0 NA E -147.1 142.3 43.0 NA NA
6qdv 6 Q96A72 100.0 6e-105 EM
 2019-02-20 ARG F:83 9:87 93.0 0.413 E -147.0 146.5 93.0 0.413 0.0
1p27 1 P61326 100.0 2e-104 X-RAY
 2003-08-19 ARG A:84 A:85 104.0 0.462 E -144.6 130.0 93.0 0.413 0.049 C:P61326:0.049
 HOH
 3.376
 NE
 O
ARG C:84 C:85 100.0 0.444 E -152.2 136.1 74.0 0.329 0.115 A:P61326:0.116
 HOH
 3.848
 NE
 O
1oo0 1 P49028 90.34 3e-96 X-RAY
 2003-05-27 ARG A:86 A:86 95.0 0.422 E -158.2 138.2 95.0 0.422 0.0 MPD
HOH
 3.267
4.365
 CB
N
 C5
O
1rk8 2 P49028 90.34 3e-96 X-RAY
 2004-04-13 ARG B:86 B:86 87.0 0.387 E -144.5 165.4 87.0 0.387 0.0 HOH
 6.444
 NH1
 O
2x1g 2 P49028 90.34 3e-96 X-RAY
 2010-02-16 ARG B:86 B:86 88.0 0.391 -158.8 113.7 52.0 0.231 0.16 E:Q9VEC5:0.16
ARG D:86 D:86 87.0 0.387 -158.8 113.7 NA NA NA
1hl6 2 P49028 90.34 5e-96 X-RAY
 2003-05-08 ARG B:86 B:86 96.0 0.427 E -162.4 145.9 92.0 0.409 0.018 A:Q9V535:0.018
 HOH
 3.305
 NH1
 O
ARG D:86 D:86 97.0 0.431 E -160.6 132.0 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q96a72-f1 1 Q96A72 100.0 1e-108 ARG A:87 A:87 104.0 0.462 E -139.5 140.0
af-p61326-f1 1 P61326 98.63 2e-105 ARG A:85 A:85 105.0 0.467 E -134.3 143.9